Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012383 Sechium edule HOM05D006796 ORTHO05D008615 1.1e-142 510.0 266 100.0
ClCG09G022060 Citrullus lanatus HOM05D006796 ORTHO05D008615 2.4e-89 332.8 243 76.1
CsaV3_5G022970 Cucumis sativus L. HOM05D006796 ORTHO05D008615 2.4e-89 332.8 238 76.5
MELO3C002984.2 Cucumis melo HOM05D006796 ORTHO05D008615 6.8e-84 314.7 277 66.4
Nn4g23271 Nelumbo nucifera HOM05D006796 ORTHO05D008615 2.2e-74 283.1 242 65.3
Manes.05G105900 Manihot esculenta HOM05D006796 ORTHO05D008615 1.4e-73 280.4 246 65.4
Haze_11961 Corylus avellana HOM05D006796 ORTHO05D008615 1.3e-71 273.9 260 62.3
TWI31G0717 Tripterygium wilfordii HOM05D006796 ORTHO05D008615 8.6e-71 271.2 242 63.2
Sabra10G0124800 Salix brachista HOM05D006796 ORTHO05D008615 2.5e-70 269.6 249 61.0
GSVIVG01012496001 Vitis vinifera HOM05D006796 ORTHO05D008615 3.3e-70 269.2 243 62.6
CiPaw.07G071700 Carya illinoinensis HOM05D006796 ORTHO05D008615 5.6e-70 268.5 249 61.8
Actinidia19934 Actinidia chinensis HOM05D006796 ORTHO05D008615 9.6e-70 267.7 241 60.2
Atru.chr11.1722 Acer truncatum HOM05D006796 ORTHO05D008615 1.2e-69 267.3 241 64.3
arahy.Tifrunner.gnm1.ann1.NP20FV Arachis hypogaea HOM05D006796 ORTHO05D008615 1.6e-69 266.9 252 60.7
Potri.010G164400 Populus trichocarpa HOM05D006796 ORTHO05D008615 3.6e-69 265.8 250 60.0
SalBow8G2627 Salvia bowleyana HOM05D006796 ORTHO05D008615 3.6e-69 265.8 249 61.8
arahy.Tifrunner.gnm1.ann1.R8NX8D Arachis hypogaea HOM05D006796 ORTHO05D008615 6.2e-69 265.0 251 60.6
Lj3A1033T56 Lonicera japonica HOM05D006796 ORTHO05D008615 8.1e-69 264.6 238 62.2
Cpa.g.sc1.63 Carica papaya HOM05D006796 ORTHO05D008615 1.1e-68 264.2 242 64.0
TAR629G0550 Trochodendron aralioides HOM05D006796 ORTHO05D008615 1.8e-68 263.5 235 62.6
Ca_04876_v3 Cicer arietinum L. HOM05D006796 ORTHO05D008615 2.4e-68 263.1 233 62.2
Eucgr.B03198 Eucalyptus grandis HOM05D006796 ORTHO05D008615 2.4e-68 263.1 246 61.0
FAN07G2185 Fragaria x ananassa HOM05D006796 ORTHO05D008615 4.0e-68 262.3 241 62.2
Psat2g126440 Pisum sativum HOM05D006796 ORTHO05D008615 4.0e-68 262.3 233 62.2
Lj2g0006920 Lotus japonicus HOM05D006796 ORTHO05D008615 6.9e-68 261.5 235 63.0
VMungo1215G0648 Vigna mungo HOM05D006796 ORTHO05D008615 6.9e-68 261.5 230 63.0
CSS0026382 Camellia sinensis var. sinensis HOM05D006796 ORTHO05D008615 9.0e-68 261.2 263 56.3
Ciclev10032381m.g Citrus clementina HOM05D006796 ORTHO05D008615 4.4e-67 258.8 248 60.1
Phvul.002G103200 Phaseolus vulgaris HOM05D006796 ORTHO05D008615 4.4e-67 258.8 230 62.2
Dinv34092 Davidia involucrata HOM05D006796 ORTHO05D008615 1.7e-66 256.9 267 58.1
Cc11_g12630 Coffea canephora HOM05D006796 ORTHO05D008615 2.2e-66 256.5 241 60.6
MSTRG.13431 Avicennia marina HOM05D006796 ORTHO05D008615 2.9e-66 256.1 249 58.6
Migut.L01249 Erythranthe guttata HOM05D006796 ORTHO05D008615 2.9e-66 256.1 247 59.1
TAR371G0712 Trochodendron aralioides HOM05D006796 ORTHO05D008615 3.8e-66 255.8 244 61.1
Sc11g0002140 Simmondsia chinensis HOM05D006796 ORTHO05D008615 4.9e-66 255.4 230 58.7
FAN22G2031 Fragaria x ananassa HOM05D006796 ORTHO05D008615 6.4e-66 255.0 243 61.3
FvH4_4g30770 Fragaria vesca HOM05D006796 ORTHO05D008615 8.4e-66 254.6 243 60.9
Glyma.02G111300 Glycine max HOM05D006796 ORTHO05D008615 8.4e-66 254.6 230 61.7
Prupe.1G279300 Prunus persica HOM05D006796 ORTHO05D008615 1.1e-65 254.2 251 59.8
PGR102G1583 Punica granatum HOM05D006796 ORTHO05D008615 1.4e-65 253.8 248 58.9
Thecc.02G339900 Theobroma cacao HOM05D006796 ORTHO05D008615 1.4e-65 253.8 244 58.6
TPR.G19931 Trifolium pratense HOM05D006796 ORTHO05D008615 1.9e-65 253.4 234 62.0
Glyma.01G052700 Glycine max HOM05D006796 ORTHO05D008615 3.2e-65 252.7 231 61.0
Nitab4.5_0000391g0260 Nicotiana tabacum HOM05D006796 ORTHO05D008615 3.2e-65 252.7 240 59.2
Gorai.012G186400 Gossypium raimondii HOM05D006796 ORTHO05D008615 4.2e-65 252.3 248 57.3
FAN12G1163 Fragaria x ananassa HOM05D006796 ORTHO05D008615 5.4e-65 251.9 243 60.5
Hma1.2p1_0354F.1_g133830 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 7.1e-65 251.5 161 78.3
CAN.G964.30 Capsicum annuum HOM05D006796 ORTHO05D008615 9.3e-65 251.1 239 61.1
Duzib268G1785 Durio zibethinus HOM05D006796 ORTHO05D008615 9.3e-65 251.1 250 58.0
Hund25209 Selenicereus undatus HOM05D006796 ORTHO05D008615 9.3e-65 251.1 251 57.4
CiPaw.05G129900 Carya illinoinensis HOM05D006796 ORTHO05D008615 1.2e-64 250.8 182 72.5
Gohir.D04G191000 Gossypium hirsutum HOM05D006796 ORTHO05D008615 1.6e-64 250.4 248 56.0
Gohir.D04G190901 Gossypium hirsutum HOM05D006796 ORTHO05D008615 2.7e-64 249.6 248 56.9
EL10Ac6g13260 Beta vulgaris HOM05D006796 ORTHO05D008615 4.6e-64 248.8 250 55.6
PSO017G7370 Papaver somniferum HOM05D006796 ORTHO05D008615 4.6e-64 248.8 156 76.9
PSO478G1165 Papaver somniferum HOM05D006796 ORTHO05D008615 4.6e-64 248.8 156 76.9
Peaxi162Scf00222g00236 Petunia axillaris HOM05D006796 ORTHO05D008615 6.0e-64 248.4 229 61.1
RcHm_v2.0_Chr4g0439161 Rosa chinensis HOM05D006796 ORTHO05D008615 7.8e-64 248.1 242 59.1
PGSC0003DMG400028345 Solanum tuberosum HOM05D006796 ORTHO05D008615 1.3e-63 247.3 249 58.2
MD13G1068600 Malus domestica HOM05D006796 ORTHO05D008615 6.6e-63 245.0 155 79.4
Lalb_Chr10g0098461 Lupinus albus HOM05D006796 ORTHO05D008615 1.1e-62 244.2 231 59.7
SGA_v2.0_scaffold63G21639 Striga asiatica HOM05D006796 ORTHO05D008615 1.9e-62 243.4 258 57.0
MSTRG.2332 Avicennia marina HOM05D006796 ORTHO05D008615 3.3e-62 242.7 189 63.5
Sopen05g007830 Solanum pennellii HOM05D006796 ORTHO05D008615 9.6e-62 241.1 246 58.1
CARHR014360 Cardamine hirsuta HOM05D006796 ORTHO05D008615 1.3e-61 240.7 255 54.9
MD16G1067400 Malus domestica HOM05D006796 ORTHO05D008615 2.8e-61 239.6 243 58.4
CANSAT64G1871 Cannabis sativa HOM05D006796 ORTHO05D008615 3.6e-61 239.2 245 56.7
Aqoxy3G00482 Aquilegia oxysepala HOM05D006796 ORTHO05D008615 4.8e-61 238.8 158 72.2
HanXRQChr12g0379181 Helianthus annuus HOM05D006796 ORTHO05D008615 4.8e-61 238.8 167 72.5
THA.LOC104805179 Tarenaya hassleriana HOM05D006796 ORTHO05D008615 8.1e-61 238.0 254 53.5
QL03p069702 Quercus lobata HOM05D006796 ORTHO05D008615 2.4e-60 236.5 321 49.8
Cfa008932 Carpinus fangiana HOM05D006796 ORTHO05D008615 3.1e-60 236.1 368 43.8
AUR62032832 Chenopodium quinoa HOM05D006796 ORTHO05D008615 3.1e-60 236.1 237 57.0
Thhalv10008453m.g Eutrema salsugineum HOM05D006796 ORTHO05D008615 1.5e-59 233.8 252 53.6
C05p11750 Brassica napus HOM05D006796 ORTHO05D008615 4.9e-58 228.8 212 59.4
AL1G25830 Arabidopsis lyrata HOM05D006796 ORTHO05D008615 6.4e-58 228.4 255 53.3
BcaC05g25295 Brassica carinata HOM05D006796 ORTHO05D008615 6.4e-58 228.4 241 53.9
AT1G13990 Arabidopsis thaliana HOM05D006796 ORTHO05D008615 1.1e-57 227.6 253 52.2
ECA234G4054 Erigeron canadensis HOM05D006796 ORTHO05D008615 1.1e-57 227.6 166 71.1
Oeu055099.3 Olea europaea HOM05D006796 ORTHO05D008615 2.7e-56 223.0 319 46.4
Carub.0001s1368 Capsella rubella HOM05D006796 ORTHO05D008615 6.0e-56 221.9 170 67.1
CDE02G1750 Ceratophyllum demersum HOM05D006796 ORTHO05D008615 1.3e-55 220.7 169 63.9
Lsat_1_v5_gn_4_10660 Lactuca sativa HOM05D006796 ORTHO05D008615 3.0e-55 219.5 171 67.3
BolC5t29921H Brassica oleracea HOM05D006796 ORTHO05D008615 8.7e-55 218.0 186 62.9
ATR0564G337 Amborella trichopoda HOM05D006796 ORTHO05D008615 2.8e-53 213.0 157 68.2
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 1.1e-52 211.1 247 50.2
Aa31LG1G1040 Aethionema arabicum HOM05D006796 ORTHO05D008615 1.4e-52 210.7 295 47.1
AUR62005838 Chenopodium quinoa HOM05D006796 ORTHO05D008615 1.4e-52 210.7 248 52.0
BraA06t24185Z Brassica rapa HOM05D006796 ORTHO05D008615 1.8e-52 210.3 199 58.3
vmacro01347 Vaccinium macrocarpon HOM05D006796 ORTHO05D008615 9.0e-52 208.0 264 48.5
HPP92_016903 Vanilla planifolia HOM05D006796 ORTHO05D008615 3.8e-50 202.6 170 60.6
Zm00001eb402440 Zea mays HOM05D006796 ORTHO05D008615 2.4e-49 199.9 159 61.0
COL.COLO4_27978 Corchorus olitorius HOM05D006796 ORTHO05D008615 1.2e-48 197.6 235 51.9
Os03g0168200 Oryza sativa ssp. japonica HOM05D006796 ORTHO05D008615 2.1e-48 196.8 154 61.7
Mapoly0042s0065 Marchantia polymorpha HOM05D006796 ORTHO05D008615 8.7e-47 191.4 193 54.4
Medtr5g042520 Medicago truncatula HOM05D006796 ORTHO05D008615 4.8e-45 185.7 201 55.7
Nitab4.5_0004906g0020 Nicotiana tabacum HOM05D006796 ORTHO05D008615 3.1e-44 183.0 111 79.3
arahy.Tifrunner.gnm1.ann1.T4YGUP Arachis hypogaea HOM05D006796 ORTHO05D008615 5.3e-44 182.2 142 65.5
Hma1.2p1_0354F.1_g133820 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 3.8e-42 176.0 109 78.9
A06p09990 Brassica napus HOM05D006796 ORTHO05D008615 8.4e-42 174.9 205 50.7
CBR_g41640 Chara braunii HOM05D006796 ORTHO05D008615 1.5e-35 154.1 201 47.3
Potri.008G090900 Populus trichocarpa HOM05D006796 ORTHO05D008615 3.4e-35 152.9 197 50.3
Solyc05g013060.4 Solanum lycopersicum HOM05D006796 ORTHO05D008615 2.9e-34 149.8 194 51.5
SMO271G0176 Selaginella moellendorffii HOM05D006796 ORTHO05D008615 7.9e-32 141.7 186 46.2
AagrBONN_evm.TU.Sc2ySwM_344.1473 Anthoceros agrestis HOM05D006796 ORTHO05D008615 6.7e-31 138.7 137 55.5
Actinidia31964 Actinidia chinensis HOM05D006796 ORTHO05D008615 1.5e-30 137.5 92 79.3
Gohir.1Z049816 Gossypium hirsutum HOM05D006796 ORTHO05D008615 5.3e-28 129.0 88 72.7
Nn2g13928 Nelumbo nucifera HOM05D006796 ORTHO05D008615 2.5e-25 120.2 98 65.3
vmacro01341 Vaccinium macrocarpon HOM05D006796 ORTHO05D008615 1.7e-18 97.4 222 34.7
Rhsim12G0078900 Rhododendron simsii HOM05D006796 ORTHO05D008615 9.7e-14 81.6 354 27.7
Oeu021077.1 Olea europaea HOM05D006796 ORTHO05D008615 5.0e-10 69.3 125 40.0
Nn2g11199 Nelumbo nucifera HOM05D006796 ORTHO05D008615 5.5e-09 65.9 61 59.0
Gohir.A12G247950 Gossypium hirsutum HOM05D006796 ORTHO05D008615 1.6e-08 64.3 63 47.6
CDE09G0941 Ceratophyllum demersum HOM05D006796 ORTHO05D008615 6.7e-07 58.9 37 67.6
Ca_27564_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.2e-06 58.2 38 71.1
SalBow1G4829 Salvia bowleyana HOM05D006796 ORTHO05D000018 1.2e-06 58.2 46 58.7
PRCOL_00001264 Prasinoderma coloniale HOM05D006796 ORTHO05D008615 5.7e-06 55.8 188 28.2
Ca_28040_v3 Cicer arietinum L. HOM05D006796 ORTHO05D008615 7.5e-06 55.5 37 64.9


User provided reference genes

Program Settings