Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 8.9e-232 806.6 414 100.0
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 9.0e-184 647.1 384 85.7
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 2.0e-167 592.8 350 86.9
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 3.0e-163 578.9 383 79.6
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 4.2e-141 505.4 351 75.5
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 5.5e-141 505.0 350 74.0
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 1.6e-140 503.4 384 70.1
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 1.0e-139 500.7 350 72.9
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 2.0e-138 496.5 352 73.0
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 3.4e-138 495.7 356 72.8
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 9.8e-138 494.2 350 73.4
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 6.3e-137 491.5 350 72.6
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 2.4e-136 489.6 352 73.0
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 4.5e-135 485.3 350 71.7
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 7.7e-135 484.6 351 71.2
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 2.9e-134 482.6 350 70.9
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 3.3e-133 479.2 354 72.6
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 3.3e-133 479.2 351 71.5
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 3.3e-133 479.2 353 71.7
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 9.5e-133 477.6 351 71.5
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.2e-132 477.2 350 70.3
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 2.8e-132 476.1 353 72.2
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 4.7e-132 475.3 350 70.3
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 4.7e-132 475.3 350 70.3
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 6.1e-132 474.9 350 70.3
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 8.0e-132 474.6 350 70.3
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 2.3e-131 473.0 350 70.6
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 2.3e-131 473.0 351 70.9
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.3e-131 473.0 350 69.7
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 1.5e-130 470.3 353 71.4
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 2.6e-130 469.5 353 70.5
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 5.7e-130 468.4 351 72.1
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 1.3e-129 467.2 351 69.2
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 2.2e-129 466.5 381 66.1
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 6.4e-129 464.9 351 70.4
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 8.3e-129 464.5 352 69.6
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 1.1e-128 464.2 351 70.9
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 3.2e-128 462.6 350 68.3
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 9.2e-128 461.1 351 69.2
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 7.8e-127 458.0 394 63.7
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 1.3e-126 457.2 377 65.8
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 4.3e-125 452.2 353 69.1
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 4.7e-124 448.7 350 67.4
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 4.7e-124 448.7 352 67.3
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 1.4e-123 447.2 353 68.8
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 3.1e-123 446.0 351 66.7
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 5.2e-123 445.3 352 67.6
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 5.8e-122 441.8 352 69.9
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 7.5e-122 441.4 351 67.8
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 2.4e-120 436.4 352 67.6
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 7.0e-120 434.9 376 63.6
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 1.2e-119 434.1 355 66.2
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 1.2e-119 434.1 374 63.6
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 2.0e-119 433.3 355 66.8
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 1.0e-118 431.0 352 65.3
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 3.0e-118 429.5 408 60.0
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 1.5e-117 427.2 352 64.8
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 9.5e-117 424.5 374 63.6
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 1.1e-115 421.0 386 60.9
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 2.3e-115 419.9 358 64.0
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 2.3e-115 419.9 406 57.9
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 5.8e-114 415.2 354 63.6
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 9.8e-114 414.5 374 62.8
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 8.3e-113 411.4 389 59.9
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 1.9e-112 410.2 364 62.9
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 1.6e-111 407.1 351 62.7
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 1.3e-110 404.1 394 58.1
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 2.1e-108 396.7 325 65.2
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 3.6e-108 396.0 367 62.7
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 2.0e-106 390.2 395 56.7
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 7.6e-106 388.3 361 59.8
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 9.9e-106 387.9 374 59.9
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 1.3e-105 387.5 345 61.4
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 4.9e-105 385.6 345 61.4
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 1.9e-104 383.6 362 59.7
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 4.1e-104 382.5 400 56.2
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 7.1e-104 381.7 354 61.0
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 9.2e-104 381.3 362 61.9
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 3.0e-102 376.3 355 61.4
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 1.1e-101 374.4 356 60.1
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 1.5e-101 374.0 420 54.3
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 1.9e-101 373.6 420 54.0
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 2.5e-101 373.2 355 60.3
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 4.3e-101 372.5 363 57.9
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 5.6e-101 372.1 356 59.8
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 9.6e-101 371.3 351 58.4
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 1.6e-100 370.5 355 60.8
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 1.6e-100 370.5 363 59.5
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 4.7e-100 369.0 357 60.2
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 8.9e-99 364.8 365 59.7
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 5.8e-98 362.1 363 57.6
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 1.7e-97 360.5 385 52.7
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 6.4e-97 358.6 338 59.2
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 5.4e-96 355.5 435 50.1
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 2.1e-95 353.6 365 58.4
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 4.6e-95 352.4 386 54.7
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 2.3e-94 350.1 362 57.2
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 5.1e-94 349.0 419 51.1
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 8.7e-94 348.2 363 58.4
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 1.9e-93 347.1 252 72.6
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 3.6e-92 342.8 359 57.1
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 1.2e-90 337.8 356 58.7
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 7.6e-90 335.1 368 54.1
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 1.0e-86 324.7 411 50.1
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 3.0e-86 323.2 407 50.6
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 6.4e-81 305.4 430 45.1
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 1.6e-68 264.2 202 70.3
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 8.2e-68 261.9 269 56.1
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 3.1e-67 260.0 254 58.7
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 1.5e-66 257.7 222 62.2
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.6e-66 256.9 173 70.5
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 3.4e-66 256.5 222 61.7
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 4.6e-63 246.1 218 61.0
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 3.9e-54 216.5 376 41.8
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 2.6e-53 213.8 254 49.2
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 5.3e-43 179.5 403 37.0
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 3.2e-40 170.2 363 38.6
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 6.1e-39 166.0 406 36.7
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 1.0e-38 165.2 101 80.2
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 2.0e-37 161.0 244 41.4
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 2.0e-34 151.0 380 34.2
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 1.7e-33 147.9 106 67.9
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 2.3e-30 137.5 382 32.5
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 4.0e-30 136.7 182 40.1
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 3.1e-27 127.1 101 67.3
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 4.4e-21 106.7 262 34.4
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 8.6e-17 92.4 80 63.8
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 3.3e-16 90.5 102 47.1
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 2.0e-10 71.2 41 78.0
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 4.3e-08 63.5 50 64.0
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 4.7e-07 60.1 88 50.0


User provided reference genes

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