Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 4.9e-126 454.5 235 100.0
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 4.7e-105 384.8 235 81.7
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 8.1e-105 384.0 235 81.7
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 5.5e-77 291.6 228 63.6
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 2.1e-76 289.7 225 66.7
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 2.3e-75 286.2 235 63.8
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 1.1e-74 283.9 206 68.9
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 5.7e-74 281.6 227 63.0
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 7.4e-74 281.2 230 62.6
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 1.3e-73 280.4 231 61.5
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 2.1e-73 279.6 225 62.7
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 3.7e-73 278.9 222 63.5
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 1.1e-72 277.3 223 62.8
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 1.8e-72 276.6 222 64.4
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 2.4e-72 276.2 211 66.8
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 6.9e-72 274.6 198 66.7
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 3.4e-71 272.3 235 60.4
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 4.5e-71 271.9 199 68.8
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 1.0e-70 270.8 222 61.3
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 2.9e-70 269.2 228 59.2
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 6.5e-70 268.1 227 58.6
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 8.4e-70 267.7 233 60.5
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 2.5e-69 266.2 228 60.5
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 2.5e-69 266.2 237 62.9
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 3.2e-69 265.8 235 58.7
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 2.1e-68 263.1 222 60.8
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 3.5e-68 262.3 231 59.7
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 4.6e-68 261.9 200 66.0
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 7.9e-68 261.2 222 60.4
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 3.9e-67 258.8 231 59.7
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 5.1e-67 258.5 222 59.9
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 5.1e-67 258.5 231 59.7
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 6.7e-67 258.1 226 59.3
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 1.9e-66 256.5 224 56.2
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 2.5e-66 256.1 230 58.3
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 2.5e-66 256.1 230 58.7
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 2.5e-66 256.1 231 59.3
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 2.5e-66 256.1 222 57.2
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 4.3e-66 255.4 234 60.3
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 1.3e-65 253.8 220 60.0
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 2.2e-65 253.1 223 59.6
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 2.8e-65 252.7 207 64.3
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 3.1e-64 249.2 229 55.9
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 5.3e-64 248.4 226 60.6
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 1.2e-63 247.3 232 55.2
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 2.0e-63 246.5 230 57.8
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 3.4e-63 245.7 234 53.8
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 7.7e-63 244.6 230 57.4
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 1.4e-61 240.4 232 56.9
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 1.9e-61 240.0 171 67.8
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 4.2e-61 238.8 183 66.7
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 6.1e-60 235.0 211 58.8
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 8.8e-59 231.1 205 59.0
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 3.3e-58 229.2 225 54.7
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 4.3e-58 228.8 225 56.9
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 1.3e-57 227.3 229 51.5
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 4.8e-57 225.3 183 62.3
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 5.3e-56 221.9 211 55.5
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.0e-55 219.9 202 57.4
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.0e-55 219.9 202 57.4
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 2.2e-54 216.5 226 51.3
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 5.5e-53 211.8 203 49.3
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 5.1e-51 205.3 224 51.3
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 1.3e-46 190.7 153 61.4
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 2.2e-46 189.9 206 50.5
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 1.5e-45 187.2 130 70.8
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 1.8e-43 180.3 144 66.0
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 1.3e-41 174.1 143 59.4
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 6.3e-41 171.8 161 54.0
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 2.7e-39 166.4 130 66.9
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 3.5e-39 166.0 230 43.5
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 1.3e-38 164.1 224 43.3
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 2.2e-38 163.3 171 53.8
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 2.1e-36 156.8 111 67.6
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 6.8e-35 151.8 230 43.9
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 3.4e-34 149.4 128 60.2
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 1.3e-33 147.5 137 55.5
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.3e-33 147.5 115 65.2
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.7e-33 147.1 119 61.3
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.7e-33 147.1 136 55.1
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.7e-33 147.1 119 61.3
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 7.0e-32 141.7 113 64.6
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 2.9e-30 136.3 113 60.2
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 2.9e-30 136.3 106 63.2
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 8.5e-30 134.8 105 63.8
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 1.1e-29 134.4 119 58.0
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 7.2e-29 131.7 136 50.7
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 8.0e-28 128.3 131 55.0
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 3.0e-27 126.3 119 55.5
HPP92_016407 Vanilla planifolia HOM05D007520 ORTHO05D009417 1.7e-25 120.6 116 49.1
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 3.7e-25 119.4 98 63.3
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.7e-22 110.5 89 62.9
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 9.5e-21 104.8 221 30.3
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.4e-19 100.9 65 72.3
Haze_10814 Corylus avellana HOM05D007520 ORTHO05D009417 5.2e-19 99.0 73 64.4
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 9.8e-18 94.7 74 62.2
Dinv08901 Davidia involucrata HOM05D007520 ORTHO05D009417 1.7e-17 94.0 70 67.1
CDE06G1244 Ceratophyllum demersum HOM05D007520 ORTHO05D009417 2.4e-16 90.1 100 46.0
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 3.2e-16 89.7 174 30.5
Eucgr.B02652 Eucalyptus grandis HOM05D007520 ORTHO05D009417 1.6e-15 87.4 77 59.7
AUR62026615 Chenopodium quinoa HOM05D007520 ORTHO05D009417 7.8e-15 85.1 101 45.5
AUR62032185 Chenopodium quinoa HOM05D007520 ORTHO05D009417 1.7e-14 84.0 91 47.3
AUR62033544 Chenopodium quinoa HOM05D000122 ORTHO05D009417 3.7e-09 66.2 81 44.4


User provided reference genes

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