Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 1.1e-306 1055.8 556 100.0
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 1.7e-262 909.1 559 85.9
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 5.1e-259 897.5 557 84.9
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 2.4e-256 888.6 557 83.3
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 1.1e-203 713.8 558 68.1
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.3e-201 706.8 550 68.7
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 3.2e-200 702.2 558 67.7
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 3.5e-199 698.7 553 68.9
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 1.7e-198 696.4 558 66.3
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 7.3e-197 691.0 562 67.6
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 1.2e-196 690.3 554 65.9
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 1.2e-196 690.3 553 68.0
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 2.8e-196 689.1 554 65.9
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 2.4e-195 686.0 556 66.4
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 5.2e-195 684.9 550 65.6
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 6.9e-195 684.5 559 65.7
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 9.9e-194 680.6 557 64.8
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 2.2e-193 679.5 558 65.6
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 3.2e-192 675.6 558 65.2
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 7.1e-192 674.5 563 65.0
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 9.3e-192 674.1 564 64.0
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 1.2e-191 673.7 565 63.7
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 6.0e-191 671.4 562 63.5
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 1.7e-190 669.8 565 64.4
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 3.0e-190 669.1 561 64.2
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 4.3e-189 665.2 564 63.1
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 3.6e-188 662.1 556 64.6
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 6.2e-188 661.4 558 63.8
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 1.8e-187 659.8 559 64.2
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 1.2e-186 657.1 570 62.1
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 3.4e-186 655.6 553 64.6
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 7.6e-186 654.4 560 62.1
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 9.9e-186 654.1 564 63.5
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.1e-184 650.6 559 63.7
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.7e-183 646.0 575 62.1
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 6.0e-183 644.8 575 62.1
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 7.9e-183 644.4 555 63.2
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.0e-182 644.0 575 61.7
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 1.9e-181 639.8 560 62.7
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 7.4e-181 637.9 554 63.5
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 7.4e-181 637.9 567 62.3
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 2.8e-180 636.0 560 62.7
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 1.2e-178 630.6 560 61.8
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 1.5e-178 630.2 569 62.2
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 1.5e-178 630.2 557 61.2
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 2.0e-178 629.8 557 61.6
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 4.5e-178 628.6 555 61.4
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 5.8e-178 628.2 554 62.1
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 7.6e-178 627.9 552 62.7
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 2.2e-177 626.3 557 61.9
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 1.1e-176 624.0 658 54.1
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 1.4e-176 623.6 560 61.1
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 4.2e-176 622.1 553 62.4
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 9.3e-176 620.9 562 58.7
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 3.5e-175 619.0 555 61.6
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 4.6e-175 618.6 557 60.7
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 6.0e-175 618.2 549 61.6
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 8.7e-174 614.4 563 60.6
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.6e-173 611.7 562 60.3
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 5.6e-173 611.7 549 60.7
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 9.6e-173 610.9 555 60.9
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 9.6e-173 610.9 562 60.0
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 1.3e-172 610.5 575 59.1
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 2.1e-172 609.8 563 60.6
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 2.0e-170 603.2 560 57.9
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 3.4e-170 602.4 555 59.8
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 5.8e-170 601.7 550 59.6
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 1.1e-168 597.4 560 59.6
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 1.9e-168 596.7 553 58.8
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 4.2e-168 595.5 555 59.6
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 4.2e-168 595.5 559 59.2
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 1.6e-167 593.6 546 59.2
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 2.7e-167 592.8 562 58.4
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.0e-166 590.9 562 58.4
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 1.0e-166 590.9 548 58.4
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 1.3e-164 583.9 575 58.3
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 1.6e-164 583.6 556 59.0
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 2.8e-164 582.8 546 56.8
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 2.8e-164 582.8 551 58.1
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 1.8e-163 580.1 577 58.1
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 1.5e-162 577.0 555 57.7
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 6.5e-161 571.6 552 59.1
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 5.7e-157 558.5 582 54.0
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 1.3e-156 557.4 575 55.7
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 1.6e-156 557.0 560 55.9
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 3.7e-156 555.8 557 56.0
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 3.1e-155 552.7 563 55.1
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 3.1e-155 552.7 567 55.6
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 5.3e-155 552.0 565 54.9
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 2.0e-154 550.1 555 56.2
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 4.5e-154 548.9 565 55.2
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 2.9e-153 546.2 583 53.0
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 1.4e-152 543.9 560 54.5
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 2.5e-152 543.1 576 54.0
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 2.5e-152 543.1 564 54.1
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 4.2e-152 542.3 560 54.3
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 2.7e-151 539.7 557 54.4
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 2.3e-150 536.6 577 53.0
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 1.0e-142 511.1 579 50.8
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.7e-140 503.8 447 59.5
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 2.2e-140 503.4 555 53.2
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 3.1e-139 499.6 543 51.0
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 2.2e-132 476.9 553 51.2
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 9.1e-131 471.5 417 63.8
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 4.5e-130 469.2 423 62.6
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 1.7e-129 467.2 549 47.0
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.7e-127 459.1 501 54.3
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 6.1e-127 458.8 432 61.1
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.3e-126 456.8 526 52.1
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 1.2e-125 454.5 570 47.5
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 5.5e-120 435.6 560 45.5
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 6.6e-113 412.1 305 70.5
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 1.1e-112 411.4 558 43.9
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 1.5e-112 411.0 557 42.9
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 7.3e-112 408.7 281 72.2
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 4.7e-111 406.0 371 61.5
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 4.1e-107 392.9 558 43.7
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 2.0e-93 347.4 385 51.4
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 2.5e-88 330.5 490 43.7
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 1.2e-87 328.2 464 46.3
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 1.2e-82 311.6 523 41.9
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 6.6e-81 305.8 308 55.5
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 1.4e-75 288.1 341 51.3
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 9.3e-67 258.8 175 71.4
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 7.9e-66 255.8 494 40.7
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 1.0e-65 255.4 403 40.9
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 1.8e-62 244.6 203 63.5
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.8e-61 239.6 231 60.6
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.2e-50 205.3 157 64.3
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 7.6e-45 186.0 315 40.0
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 9.4e-43 179.1 138 65.9
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.1e-42 177.9 145 65.5
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 2.7e-42 177.6 139 66.9
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 3.0e-41 174.1 142 58.5
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 5.0e-36 156.8 118 68.6
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 5.5e-35 153.3 118 66.9
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-27 129.0 175 46.9
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 5.5e-27 126.7 279 36.2
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 1.1e-22 112.5 112 53.6
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 1.4e-22 112.1 86 66.3
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 5.9e-21 106.7 114 43.9
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-20 105.5 90 62.2
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 7.5e-16 89.7 60 70.0
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 7.0e-14 83.2 169 42.0
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 6.5e-12 76.6 66 62.1
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 2.5e-11 74.7 172 37.8
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 1.8e-09 68.6 42 71.4
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 6.8e-09 66.6 169 37.3
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 2.0e-08 65.1 48 66.7
RcHm_v2.0_Chr1g0341151 Rosa chinensis HOM05D004469 ORTHO05D005429 3.4e-08 64.3 156 35.9
Prupe.8G069200 Prunus persica HOM05D004469 ORTHO05D005429 3.7e-07 60.8 59 50.8
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 8.3e-07 59.7 52 61.5
RcHm_v2.0_Chr7g0241351 Rosa chinensis HOM05D004469 ORTHO05D005429 1.4e-06 58.9 39 71.8
Os04g0644300 Oryza sativa ssp. japonica HOM05D004469 ORTHO05D005429 1.8e-06 58.5 180 32.2
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 9.1e-06 56.2 46 60.9


User provided reference genes

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