Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 0.0e+00 1340.9 714 100.0
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 0.0e+00 1138.3 720 84.9
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 0.0e+00 1111.3 626 87.5
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 2.0e-303 1045.4 887 67.1
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 3.4e-255 885.2 711 62.9
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 2.1e-249 865.9 612 70.1
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 1.4e-248 863.2 712 62.8
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 4.0e-248 861.7 741 60.7
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 9.3e-245 850.5 579 70.6
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 3.6e-241 838.6 708 61.7
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.1e-240 837.0 724 60.1
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 4.0e-240 835.1 712 63.2
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 1.5e-239 833.2 721 60.7
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 3.4e-239 832.0 716 60.9
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 1.1e-237 827.0 605 66.9
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 1.9e-237 826.2 706 61.8
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 5.4e-237 824.7 615 67.0
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.2e-236 823.5 720 61.5
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 4.6e-236 821.6 576 68.9
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 3.3e-234 815.5 701 59.8
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 4.3e-234 815.1 626 64.5
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 1.3e-233 813.5 737 56.4
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 2.8e-233 812.4 626 64.7
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 3.7e-233 812.0 701 59.6
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 4.8e-233 811.6 580 67.4
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.8e-232 809.7 641 64.3
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 1.8e-232 809.7 597 65.3
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 1.2e-231 807.0 627 65.4
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 6.4e-230 801.2 605 65.3
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 1.1e-229 800.4 545 69.9
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 2.5e-229 799.3 638 64.7
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 2.5e-229 799.3 602 64.8
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 9.3e-229 797.3 633 63.0
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 6.0e-228 794.7 597 64.2
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 1.3e-227 793.5 717 60.1
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 3.9e-227 792.0 588 65.6
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 6.7e-227 791.2 610 63.1
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 1.5e-226 790.0 718 61.3
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 1.6e-225 786.6 632 61.4
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 2.1e-225 786.2 633 63.0
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 4.8e-225 785.0 606 64.4
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 2.0e-223 779.6 721 61.0
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 2.9e-222 775.8 625 62.1
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 6.5e-222 774.6 598 63.4
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 1.9e-221 773.1 714 57.8
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 5.5e-221 771.5 632 62.2
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 9.3e-221 770.8 718 56.7
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.2e-220 770.4 640 62.2
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 4.6e-220 768.5 706 59.2
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 3.7e-217 758.8 632 60.8
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 1.4e-216 756.9 687 61.3
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 4.1e-216 755.4 645 59.2
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 1.5e-215 753.4 707 57.4
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 5.9e-215 751.5 592 60.5
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 1.6e-212 743.4 722 58.7
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 2.1e-212 743.0 592 61.3
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 5.1e-211 738.4 710 56.6
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 8.8e-211 737.6 633 59.2
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 4.3e-210 735.3 707 56.3
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 1.7e-209 733.4 596 60.4
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 2.2e-209 733.0 710 57.2
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 8.2e-209 731.1 718 57.4
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 1.8e-208 729.9 631 58.6
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 5.3e-208 728.4 719 56.6
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 6.9e-208 728.0 575 60.0
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 7.7e-207 724.5 575 62.8
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 1.3e-206 723.8 586 60.4
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 1.7e-206 723.4 576 62.5
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 5.0e-206 721.8 622 59.0
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 2.7e-204 716.1 636 58.3
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 3.9e-203 712.2 615 59.3
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 6.7e-203 711.4 536 64.7
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 9.7e-202 707.6 1000 43.5
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 4.1e-200 702.2 588 58.2
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 2.1e-196 689.9 592 56.9
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.6e-194 682.9 597 55.8
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 1.3e-193 680.6 597 57.3
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 1.4e-192 677.2 690 53.5
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 4.1e-192 675.6 592 55.9
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.6e-191 673.7 702 52.7
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 1.7e-185 653.7 596 54.9
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 1.6e-183 647.1 616 55.4
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.3e-182 644.0 645 53.6
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.9e-175 618.6 631 53.9
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 1.6e-172 610.5 615 50.7
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 1.0e-171 607.8 604 50.0
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 1.5e-170 604.0 619 51.5
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.5e-170 604.0 634 50.0
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 4.1e-168 595.9 570 53.9
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 9.5e-165 584.7 571 51.0
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 1.9e-160 570.5 604 50.3
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 5.0e-158 562.4 575 53.7
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 2.6e-154 550.1 584 49.5
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 9.8e-154 548.1 608 47.5
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 6.4e-153 545.4 377 70.6
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 1.1e-147 528.1 541 53.6
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 3.2e-144 516.5 378 64.8
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 3.6e-140 503.1 659 40.8
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 9.9e-138 495.0 401 60.6
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.3e-133 479.9 497 53.3
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 6.9e-131 472.2 561 47.8
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 5.4e-128 462.6 491 48.7
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 6.2e-124 449.1 308 69.8
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 2.2e-121 440.7 323 66.3
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 6.4e-121 439.1 350 62.6
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.7e-119 433.7 293 68.6
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 2.1e-111 407.5 328 59.1
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.6e-103 381.3 411 51.6
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 6.1e-103 379.4 491 43.0
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 8.2e-100 369.0 403 57.1
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 6.9e-99 365.9 429 43.1
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 4.5e-98 363.2 517 38.9
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 6.9e-91 339.3 508 40.0
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 9.4e-88 328.9 348 48.0
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 1.4e-83 315.1 300 56.7
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 9.1e-83 312.4 631 33.1
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 9.1e-83 312.4 447 43.6
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 1.5e-80 305.1 317 52.4
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 2.0e-74 284.6 601 30.8
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 2.7e-66 257.7 215 59.1
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 1.2e-63 248.8 156 76.3
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 3.1e-59 234.2 154 68.8
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 4.1e-59 233.8 147 75.5
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 4.1e-59 233.8 246 52.0
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 5.9e-58 229.9 196 62.8
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 5.0e-57 226.9 147 72.1
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 8.6e-57 226.1 287 43.9
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.1e-56 225.7 228 52.2
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 8.9e-54 216.1 134 74.6
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 9.8e-53 212.6 336 42.9
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.3e-49 202.2 195 54.9
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 1.1e-48 199.1 240 49.6
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 9.5e-48 196.1 184 54.9
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 6.2e-47 193.4 280 41.1
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 4.3e-40 170.6 216 46.8
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.1e-35 156.0 118 66.1
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.9e-33 147.5 92 76.1
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 1.1e-32 146.0 308 38.0
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.5e-32 145.6 84 81.0
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 7.3e-32 143.3 83 78.3
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 2.2e-28 131.7 131 50.4
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 1.4e-27 129.0 278 33.1
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 1.2e-26 125.9 146 44.5
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.2e-23 115.9 80 60.0
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 2.8e-23 114.8 85 67.1
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 3.6e-23 114.4 105 58.1
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.2e-22 110.5 91 62.6
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 3.4e-21 107.8 70 70.0
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-19 102.8 70 70.0
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.4e-19 102.4 134 47.0
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 5.1e-17 94.0 95 53.7
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 9.6e-16 89.7 79 55.7
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.6e-10 72.4 97 42.3
MD13G1245100 Malus domestica HOM05D000751 ORTHO05D005618 2.4e-06 58.5 43 65.1
Rhsim03G0091700 Rhododendron simsii HOM05D000751 ORTHO05D340051 3.1e-06 58.2 104 35.6


User provided reference genes

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