Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 9.3e-75 284.6 326 100.0
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 3.2e-59 233.0 320 89.4
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 1.6e-58 230.7 324 88.6
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 6.0e-58 228.8 306 92.8
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 6.7e-57 225.3 325 82.8
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 1.5e-56 224.2 324 88.3
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 9.6e-56 221.5 325 86.5
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 2.8e-55 219.9 319 89.7
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 6.2e-55 218.8 317 89.6
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 8.2e-55 218.4 307 92.8
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.8e-54 217.2 324 89.2
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.1e-54 216.5 324 89.2
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 5.3e-54 215.7 323 88.2
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 9.0e-54 214.9 306 91.8
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 1.2e-53 214.5 323 88.9
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 1.5e-53 214.2 320 88.8
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 1.5e-53 214.2 321 88.8
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 2.6e-53 213.4 320 89.7
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 3.4e-53 213.0 305 92.1
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 3.4e-53 213.0 321 88.5
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 3.4e-53 213.0 320 89.4
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 3.4e-53 213.0 320 89.4
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 3.4e-53 213.0 326 87.7
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.5e-53 212.6 316 90.2
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 4.5e-53 212.6 319 88.7
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 4.5e-53 212.6 319 89.0
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 4.5e-53 212.6 306 92.2
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 5.8e-53 212.2 306 91.8
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 7.6e-53 211.8 319 87.5
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 7.6e-53 211.8 306 91.5
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 7.6e-53 211.8 319 88.1
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.0e-52 211.5 322 75.8
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.0e-52 211.5 305 92.1
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 1.3e-52 211.1 322 88.8
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 1.3e-52 211.1 322 88.8
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 1.3e-52 211.1 326 87.1
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 1.3e-52 211.1 326 87.1
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.3e-52 211.1 305 91.8
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 1.3e-52 211.1 322 88.2
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.7e-52 210.7 320 89.4
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.7e-52 210.7 324 88.3
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 1.7e-52 210.7 322 88.5
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 2.2e-52 210.3 328 76.5
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 2.2e-52 210.3 319 87.8
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 2.9e-52 209.9 326 86.8
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 3.8e-52 209.5 329 77.2
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 3.8e-52 209.5 341 61.9
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 4.9e-52 209.1 296 93.6
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 6.5e-52 208.8 319 86.5
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 8.4e-52 208.4 319 88.1
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 8.4e-52 208.4 320 88.1
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.1e-51 208.0 243 87.7
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 1.1e-51 208.0 325 87.4
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 1.1e-51 208.0 319 88.7
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.1e-51 208.0 323 85.8
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 1.1e-51 208.0 327 86.5
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 1.4e-51 207.6 336 74.4
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.4e-51 207.6 319 87.8
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 1.4e-51 207.6 322 87.6
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 1.4e-51 207.6 321 88.5
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.4e-51 207.6 347 64.8
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 1.9e-51 207.2 326 87.4
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 1.9e-51 207.2 321 88.5
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 1.9e-51 207.2 304 86.8
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 2.5e-51 206.8 324 88.6
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 4.2e-51 206.1 318 87.7
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 4.2e-51 206.1 319 87.1
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 5.5e-51 205.7 319 87.5
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 5.5e-51 205.7 323 87.3
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 5.5e-51 205.7 324 85.5
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 7.1e-51 205.3 366 66.9
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 7.1e-51 205.3 322 87.3
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 7.1e-51 205.3 303 91.1
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 7.1e-51 205.3 320 88.1
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 9.3e-51 204.9 328 86.3
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 9.3e-51 204.9 319 87.1
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.6e-50 204.1 321 87.5
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 3.5e-50 203.0 319 86.5
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 3.5e-50 203.0 319 88.1
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 4.6e-50 202.6 320 87.5
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 4.6e-50 202.6 320 87.5
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 6.0e-50 202.2 323 86.1
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 7.9e-50 201.8 305 90.5
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 7.9e-50 201.8 305 90.5
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.0e-49 201.4 320 87.2
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.0e-49 201.4 324 87.0
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 1.3e-49 201.1 320 87.5
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.3e-49 201.1 320 87.5
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.3e-49 201.1 320 87.2
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 1.8e-49 200.7 322 86.6
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 2.3e-49 200.3 324 87.0
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 2.3e-49 200.3 305 88.5
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 3.9e-49 199.5 320 86.9
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 5.1e-49 199.1 297 91.2
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 6.7e-49 198.7 320 86.2
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 6.7e-49 198.7 304 89.8
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 6.7e-49 198.7 327 85.9
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 6.7e-49 198.7 324 87.7
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 6.7e-49 198.7 319 85.0
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 8.7e-49 198.4 339 72.3
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 8.7e-49 198.4 319 85.0
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 1.9e-48 197.2 328 86.0
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.5e-48 196.8 328 77.7
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.5e-48 196.8 326 84.0
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 3.3e-48 196.4 305 88.5
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 3.3e-48 196.4 319 85.0
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 4.3e-48 196.1 320 86.6
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 4.3e-48 196.1 320 86.6
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 4.3e-48 196.1 307 87.3
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 2.2e-47 193.7 320 86.6
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 2.2e-47 193.7 320 86.2
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 2.8e-47 193.4 324 86.7
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 6.3e-47 192.2 304 88.8
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.1e-46 191.4 248 84.7
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.8e-46 190.7 340 82.6
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.8e-46 190.7 306 86.6
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 2.4e-46 190.3 304 89.5
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 9.0e-46 188.3 316 86.4
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 2.0e-45 187.2 320 85.9
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.0e-45 187.2 340 74.7
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 5.9e-45 185.7 240 70.8
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.0e-44 184.9 310 73.2
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.0e-44 184.9 306 85.0
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.0e-44 184.9 306 85.0
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 8.5e-44 181.8 336 81.2
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 1.1e-43 181.4 226 88.5
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.4e-43 181.0 323 76.8
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 5.5e-43 179.1 303 87.8
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 9.4e-43 178.3 305 85.9
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 1.2e-42 177.9 305 55.4
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 1.2e-42 177.9 101 82.2
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 1.6e-42 177.6 326 83.4
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.6e-42 177.6 328 81.1
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 7.9e-42 175.3 304 86.8
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 2.3e-41 173.7 337 71.8
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.3e-41 173.7 323 76.8
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.3e-41 173.7 323 76.8
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 8.8e-41 171.8 324 81.5
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 1.9e-40 170.6 104 80.8
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.7e-39 167.5 97 85.6
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.7e-39 167.5 97 85.6
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 4.8e-39 166.0 222 89.2
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 2.4e-38 163.7 95 80.0
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 3.1e-38 163.3 81 91.4
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 3.1e-38 163.3 96 83.3
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 3.1e-38 163.3 95 81.1
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 4.1e-38 162.9 94 80.9
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 4.1e-38 162.9 83 90.4
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 5.3e-38 162.5 93 80.6
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 6.9e-38 162.2 82 89.0
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.2e-37 161.4 328 79.6
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 1.5e-37 161.0 321 81.9
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 2.9e-36 156.8 328 79.9
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 1.4e-35 154.5 94 79.8
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 4.7e-34 149.4 79 86.1
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 1.4e-33 147.9 240 77.9
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 1.4e-33 147.9 327 77.7
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 8.2e-31 138.7 304 79.3
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 2.4e-30 137.1 84 70.2
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.9e-27 127.5 276 80.8
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 4.4e-24 116.3 61 88.5
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 8.2e-23 112.1 79 69.6
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.8e-22 110.9 71 74.6
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 2.1e-18 97.4 245 71.8
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.4e-17 94.7 77 55.8
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 5.2e-17 92.8 118 89.0
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 5.2e-17 92.8 50 80.0
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.6e-16 90.5 258 84.5
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.3e-15 88.2 65 58.5
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 1.2e-13 81.6 118 50.8
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 4.5e-13 79.7 74 54.1
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 7.7e-13 79.0 40 90.0
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 1.0e-12 78.6 49 79.6
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 1.7e-12 77.8 43 81.4
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 2.9e-12 77.0 40 87.5
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 5.5e-11 72.8 46 73.9
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 3.6e-10 70.1 41 80.5
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 1.0e-09 68.6 41 75.6
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 8.8e-09 65.5 41 73.2
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 1.8e-06 57.8 26 100.0


User provided reference genes

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