Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 1.5e-172 609.4 299 100.0
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 8.9e-149 530.4 294 87.1
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 9.8e-148 526.9 331 79.8
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 7.3e-119 431.0 237 89.0
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 1.8e-112 409.8 299 67.6
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 6.7e-112 407.9 287 68.6
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 1.1e-111 407.1 295 68.1
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 2.5e-111 406.0 292 67.1
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 4.3e-111 405.2 292 66.4
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 1.6e-110 403.3 300 66.3
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 1.6e-110 403.3 299 65.6
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 8.1e-110 401.0 300 65.3
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 1.8e-109 399.8 299 65.2
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 2.4e-109 399.4 299 64.5
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 2.0e-108 396.4 280 68.2
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 2.6e-108 396.0 301 64.8
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 5.8e-108 394.8 300 63.7
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 3.8e-107 392.1 299 63.9
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 3.8e-107 392.1 287 67.9
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 6.4e-107 391.3 302 63.9
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 1.1e-106 390.6 299 66.6
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 1.9e-106 389.8 301 64.5
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 1.9e-106 389.8 312 62.8
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 7.1e-106 387.9 293 65.2
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 1.8e-104 383.3 283 65.4
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 1.8e-104 383.3 286 65.4
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 2.3e-104 382.9 294 65.6
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 2.3e-104 382.9 283 68.6
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 5.1e-104 381.7 288 65.6
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 1.5e-103 380.2 283 64.3
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 4.3e-103 378.6 301 63.1
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 1.6e-102 376.7 292 64.0
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 2.8e-102 375.9 285 67.4
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 4.8e-102 375.2 305 62.0
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 2.4e-101 372.9 286 62.9
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 6.9e-101 371.3 280 66.4
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 1.2e-100 370.5 291 62.9
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 1.5e-100 370.2 287 62.7
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 5.8e-100 368.2 285 63.2
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 1.3e-99 367.1 307 61.6
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 1.7e-99 366.7 219 77.2
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 2.2e-99 366.3 219 78.5
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 2.9e-99 365.9 282 63.8
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 3.8e-99 365.5 296 62.5
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 4.2e-98 362.1 299 61.9
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 4.2e-98 362.1 294 61.9
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 5.5e-98 361.7 293 60.4
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 1.2e-97 360.5 250 68.0
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 2.7e-97 359.4 274 64.6
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 4.6e-97 358.6 251 67.7
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 6.0e-97 358.2 293 60.4
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 1.3e-96 357.1 275 64.0
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 3.0e-96 355.9 246 67.5
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 1.5e-95 353.6 272 64.3
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 2.5e-95 352.8 286 60.5
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 3.3e-95 352.4 291 58.8
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 4.3e-95 352.1 267 63.7
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 7.4e-95 351.3 215 74.4
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 9.7e-95 350.9 236 68.2
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 2.2e-94 349.7 295 63.1
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 2.8e-94 349.4 228 71.5
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 2.8e-94 349.4 222 70.3
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 4.8e-94 348.6 243 66.7
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 8.2e-94 347.8 225 72.9
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 1.4e-93 347.1 316 57.9
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 2.0e-92 343.2 231 67.5
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 4.5e-92 342.0 310 58.1
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 5.9e-92 341.7 301 59.8
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 1.7e-91 340.1 294 57.1
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 5.0e-91 338.6 238 66.0
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 1.1e-90 337.4 241 66.0
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.4e-90 337.0 221 70.1
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 1.9e-90 336.7 248 64.9
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 4.2e-90 335.5 242 64.9
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 5.5e-90 335.1 215 69.8
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 7.2e-90 334.7 251 64.1
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 9.4e-90 334.3 294 55.8
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 3.6e-89 332.4 226 67.7
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 7.9e-89 331.3 247 64.4
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 1.0e-88 330.9 283 56.2
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 1.0e-88 330.9 283 56.2
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 1.0e-88 330.9 283 56.2
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 1.8e-88 330.1 257 61.1
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 5.1e-88 328.6 247 63.6
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 5.7e-87 325.1 253 62.8
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 9.1e-85 317.8 217 65.0
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 3.4e-84 315.8 225 64.9
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 1.1e-82 310.8 233 64.8
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 4.7e-81 305.4 192 73.4
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 1.0e-80 304.3 283 55.5
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 1.8e-80 303.5 186 73.7
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 2.0e-79 300.1 193 74.1
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 4.4e-79 298.9 175 79.4
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 1.3e-78 297.4 173 79.2
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 4.5e-76 288.9 184 71.7
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 1.7e-75 287.0 175 73.7
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 8.5e-75 284.6 284 52.1
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 1.4e-74 283.9 232 61.2
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 7.2e-74 281.6 253 52.6
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 8.0e-73 278.1 204 66.2
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 8.8e-64 248.1 240 55.4
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 8.3e-54 214.9 225 45.8
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 1.6e-52 210.7 173 60.1
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 1.7e-51 207.2 221 44.3
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.8e-49 199.9 128 75.8
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 4.7e-49 199.1 128 75.8
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 6.1e-49 198.7 163 62.6
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 1.0e-48 198.0 222 48.2
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 5.7e-47 192.2 232 41.4
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 7.8e-44 181.8 215 44.2
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 1.1e-42 177.9 140 60.0
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 5.6e-42 175.6 112 75.0
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 4.0e-40 169.5 173 52.6
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 6.0e-36 155.6 97 74.2
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 6.0e-36 155.6 97 74.2
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 2.3e-32 143.7 107 63.6
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 6.8e-32 142.1 106 67.0
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 3.0e-27 126.7 131 53.4
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 3.0e-27 126.7 131 53.4
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 1.3e-22 111.3 156 44.2
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.9e-21 107.5 79 63.3
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 4.1e-21 106.3 83 61.4
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 8.1e-17 92.0 56 73.2
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 1.4e-16 91.3 132 43.9
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 8.4e-14 82.0 50 72.0
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 1.1e-13 81.6 115 47.0
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 1.9e-13 80.9 110 45.5
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 2.4e-13 80.5 105 47.6
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 5.1e-11 72.8 92 44.6
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 1.2e-07 61.6 48 54.2
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 1.5e-07 61.2 36 80.6
Dinv12329 Davidia involucrata HOM05D000450 ORTHO05D000327 2.2e-06 57.4 169 26.6
QL08p004656 Quercus lobata HOM05D005997 ORTHO05D337365 6.4e-06 55.8 54 48.1


User provided reference genes

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