Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 3.9e-148 528.1 267 100.0
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 1.2e-120 436.8 248 87.9
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 6.2e-101 371.3 252 77.8
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 1.8e-100 369.8 240 76.7
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 3.3e-86 322.4 248 65.7
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 6.2e-85 318.2 194 81.4
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 3.1e-84 315.8 248 62.1
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 1.3e-82 310.5 235 65.5
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 7.1e-81 304.7 237 64.1
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 9.3e-81 304.3 234 63.7
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 2.7e-80 302.8 246 61.4
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 3.5e-80 302.4 245 59.6
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 6.0e-80 301.6 250 61.6
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 7.8e-80 301.2 235 61.7
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 7.8e-80 301.2 254 60.2
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 5.1e-79 298.5 232 63.8
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 6.6e-79 298.1 250 60.8
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 8.7e-79 297.7 244 60.7
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 8.7e-79 297.7 244 59.0
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 8.7e-79 297.7 241 63.1
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 5.6e-78 295.0 242 60.7
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 7.3e-78 294.7 238 63.0
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 7.3e-78 294.7 237 63.3
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 9.6e-78 294.3 237 61.2
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 9.6e-78 294.3 237 61.2
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 1.3e-77 293.9 241 62.7
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.6e-77 293.5 237 61.2
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 1.6e-77 293.5 241 62.2
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 1.6e-77 293.5 242 62.8
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.1e-77 293.1 238 61.8
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 2.1e-77 293.1 237 61.2
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 2.8e-77 292.7 261 56.3
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 4.8e-77 292.0 243 61.7
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 1.1e-76 290.8 221 63.3
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 1.1e-76 290.8 237 61.2
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 1.1e-76 290.8 248 58.5
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 2.4e-76 289.7 243 58.8
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 4.0e-76 288.9 243 62.1
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 4.0e-76 288.9 259 58.3
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 5.3e-76 288.5 237 60.8
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 5.3e-76 288.5 233 61.8
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 5.3e-76 288.5 237 60.3
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 6.9e-76 288.1 244 59.8
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.2e-75 287.3 248 57.7
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 1.2e-75 287.3 217 64.5
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 2.0e-75 286.6 238 60.9
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 3.4e-75 285.8 248 57.3
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 4.4e-75 285.4 236 62.3
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 5.8e-75 285.0 233 60.1
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 2.9e-74 282.7 224 62.1
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 6.4e-74 281.6 233 60.1
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 1.1e-73 280.8 234 61.5
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 3.2e-73 279.3 233 56.7
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 3.2e-73 279.3 218 62.4
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 4.2e-73 278.9 231 59.7
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 4.2e-73 278.9 229 61.1
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 7.1e-73 278.1 233 57.5
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 9.3e-73 277.7 233 58.8
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.2e-72 277.3 234 59.0
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.6e-72 276.9 234 56.8
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 4.6e-72 275.4 240 56.2
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 6.0e-72 275.0 222 64.4
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 6.0e-72 275.0 229 60.3
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 7.9e-72 274.6 231 59.7
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 1.3e-71 273.9 217 64.5
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 1.7e-71 273.5 249 55.4
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 2.3e-71 273.1 239 59.0
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 3.9e-71 272.3 248 56.9
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 3.9e-71 272.3 231 59.3
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 6.6e-71 271.6 240 55.0
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 1.1e-70 270.8 233 59.2
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 3.3e-70 269.2 233 59.7
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 9.6e-70 267.7 228 55.7
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 1.3e-69 267.3 251 57.0
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 1.6e-69 266.9 214 63.1
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 2.1e-69 266.5 243 56.4
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 2.8e-69 266.2 249 54.6
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 3.6e-69 265.8 223 59.6
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 3.6e-69 265.8 240 52.9
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 3.6e-69 265.8 240 52.9
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 3.6e-69 265.8 240 52.9
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 4.8e-69 265.4 240 52.9
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 6.2e-69 265.0 235 54.0
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.4e-68 263.8 231 59.7
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 3.1e-68 262.7 235 59.1
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 9.0e-68 261.2 235 57.9
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 3.4e-67 259.2 237 58.2
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 9.9e-67 257.7 223 58.7
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.3e-66 257.3 220 62.3
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 1.7e-66 256.9 236 54.7
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 1.7e-66 256.9 236 56.4
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.7e-66 256.9 220 61.8
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 3.2e-65 252.7 212 59.4
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 4.2e-65 252.3 234 58.5
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 7.1e-65 251.5 258 53.1
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 1.6e-64 250.4 243 55.6
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 6.0e-64 248.4 238 55.5
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 4.3e-62 242.3 251 50.2
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 6.2e-61 238.4 239 50.6
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 1.4e-60 237.3 213 54.5
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 1.8e-60 236.9 197 62.9
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 2.4e-60 236.5 213 54.5
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 4.0e-60 235.7 213 53.1
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 1.5e-59 233.8 215 53.5
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.7e-58 230.3 231 52.4
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.7e-58 230.3 231 52.4
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.1e-57 227.6 255 50.6
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 2.3e-55 219.9 243 47.3
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 7.4e-54 214.9 224 51.8
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 9.6e-54 214.5 232 50.9
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.8e-53 212.2 166 63.3
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.6e-51 206.5 192 53.6
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 5.0e-50 202.2 250 45.6
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 5.5e-49 198.7 214 46.3
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 5.1e-47 192.2 247 44.1
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 3.1e-44 183.0 131 66.4
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 9.0e-44 181.4 141 63.1
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.4e-43 179.5 196 52.0
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 7.7e-43 178.3 228 42.5
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 7.7e-43 178.3 178 52.2
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.0e-42 177.9 221 46.6
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.1e-41 174.5 155 55.5
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 1.9e-41 173.7 122 68.9
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 1.6e-40 170.6 141 58.9
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 2.7e-40 169.9 125 67.2
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 2.8e-37 159.8 212 42.9
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 8.2e-37 158.3 120 60.8
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 2.0e-35 153.7 183 47.0
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 9.4e-33 144.8 210 41.0
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 1.4e-31 141.0 119 58.8
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 5.1e-31 139.0 148 48.6
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 1.4e-28 131.0 143 49.0
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 2.6e-27 126.7 153 45.1
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 2.5e-25 120.2 89 65.2
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.2e-25 119.8 122 50.8
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 6.1e-24 115.5 253 30.8
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 2.0e-22 110.5 89 65.2
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 1.3e-21 107.8 78 64.1
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 1.4e-20 104.4 92 62.0
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 1.3e-18 97.8 172 31.4
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 9.8e-14 81.6 181 32.6
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 5.4e-12 75.9 89 49.4
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 1.2e-06 58.2 66 43.9
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 1.5e-06 57.8 213 27.2


User provided reference genes

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