Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012230 Sechium edule HOM05D000135 ORTHO05D000816 1.1e-19 100.5 50 100.0
MELO3C026214.2 Cucumis melo HOM05D000135 ORTHO05D000816 5.6e-16 88.2 51 88.2
ClCG06G017800 Citrullus lanatus HOM05D000135 ORTHO05D000816 7.3e-16 87.8 47 91.5
CsaV3_1G000650 Cucumis sativus L. HOM05D000135 ORTHO05D000816 6.2e-15 84.7 46 89.1
MD06G1143500 Malus domestica HOM05D000135 ORTHO05D000816 1.4e-11 73.6 42 81.0
MD14G1158700 Malus domestica HOM05D000135 ORTHO05D000816 1.4e-11 73.6 42 83.3
RcHm_v2.0_Chr7g0190421 Rosa chinensis HOM05D000135 ORTHO05D000816 1.4e-11 73.6 41 82.9
FvH4_5g08060 Fragaria vesca HOM05D000135 ORTHO05D000816 5.4e-11 71.6 41 80.5
FAN04G2593 Fragaria x ananassa HOM05D000135 ORTHO05D000816 5.4e-11 71.6 41 80.5
FAN08G0825 Fragaria x ananassa HOM05D000135 ORTHO05D000816 5.4e-11 71.6 41 80.5
FAN13G0461 Fragaria x ananassa HOM05D000135 ORTHO05D000816 5.4e-11 71.6 41 80.5
FAN18G3513 Fragaria x ananassa HOM05D000135 ORTHO05D000816 5.4e-11 71.6 41 80.5
Glyma.17G128900 Glycine max HOM05D000135 ORTHO05D000816 9.2e-11 70.9 44 70.5
Lalb_Chr08g0237071 Lupinus albus HOM05D000135 ORTHO05D000816 1.2e-10 70.5 43 72.1
Prupe.5G152700 Prunus persica HOM05D000135 ORTHO05D000816 1.2e-10 70.5 42 78.6
Glyma.04G136300 Glycine max HOM05D000135 ORTHO05D000816 3.5e-10 68.9 50 66.0
Glyma.11G157200 Glycine max HOM05D000135 ORTHO05D000816 4.6e-10 68.6 46 71.7
Glyma.04G136200 Glycine max HOM05D000135 ORTHO05D000816 6.0e-10 68.2 50 66.0
Glyma.04G136600 Glycine max HOM05D000135 ORTHO05D000816 6.0e-10 68.2 45 68.9
Glyma.11G157100 Glycine max HOM05D000135 ORTHO05D000816 6.0e-10 68.2 46 71.7
Thecc.03G127000 Theobroma cacao HOM05D000135 ORTHO05D000816 6.0e-10 68.2 43 76.7
Glyma.05G047100 Glycine max HOM05D000135 ORTHO05D000816 1.0e-09 67.4 42 69.0
Gohir.D11G039500 Gossypium hirsutum HOM05D000135 ORTHO05D000816 1.3e-09 67.0 43 74.4
Gorai.007G042400 Gossypium raimondii HOM05D000135 ORTHO05D000816 1.3e-09 67.0 43 74.4
Manes.15G159100 Manihot esculenta HOM05D000135 ORTHO05D000816 1.7e-09 66.6 50 64.0
Lj4g0025643 Lotus japonicus HOM05D000135 ORTHO05D000816 3.0e-09 65.9 40 77.5
Lj4g0011466 Lotus japonicus HOM05D000135 ORTHO05D000816 5.1e-09 65.1 40 75.0
Atru.chr9.1078 Acer truncatum HOM05D000135 ORTHO05D000816 6.6e-09 64.7 43 72.1
Ca_00913_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000816 6.6e-09 64.7 43 69.8
Ca_29979_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000816 6.6e-09 64.7 43 69.8
Eucgr.B00125 Eucalyptus grandis HOM05D000135 ORTHO05D000816 6.6e-09 64.7 45 68.9
Lj1g0021536 Lotus japonicus HOM05D000135 ORTHO05D000816 8.6e-09 64.3 44 68.2
Rhsim10G0007700 Rhododendron simsii HOM05D000135 ORTHO05D000816 1.5e-08 63.5 49 61.2
Rhsim10G0007900 Rhododendron simsii HOM05D000135 ORTHO05D000816 1.5e-08 63.5 49 61.2
Eucgr.B00123 Eucalyptus grandis HOM05D000135 ORTHO05D000816 1.9e-08 63.2 45 68.9
Eucgr.B00124 Eucalyptus grandis HOM05D000135 ORTHO05D000816 1.9e-08 63.2 45 66.7
TPR.G30002 Trifolium pratense HOM05D000135 ORTHO05D000816 1.9e-08 63.2 43 67.4
Eucgr.B00128 Eucalyptus grandis HOM05D000135 ORTHO05D000816 2.5e-08 62.8 45 66.7
Medtr4g103650 Medicago truncatula HOM05D000135 ORTHO05D000816 2.5e-08 62.8 43 65.1
Rhsim10G0007800 Rhododendron simsii HOM05D000135 ORTHO05D000816 2.5e-08 62.8 49 61.2
TAR622G0710 Trochodendron aralioides HOM05D000135 ORTHO05D000816 2.5e-08 62.8 44 68.2
Duzib084G0108 Durio zibethinus HOM05D000135 ORTHO05D000816 3.3e-08 62.4 43 69.8
Eucgr.B00127 Eucalyptus grandis HOM05D000135 ORTHO05D000816 3.3e-08 62.4 45 66.7
Gohir.A11G035900 Gossypium hirsutum HOM05D000135 ORTHO05D000816 3.3e-08 62.4 43 69.8
Lalb_Chr11g0069631 Lupinus albus HOM05D000135 ORTHO05D000816 3.3e-08 62.4 39 69.2
Ciclev10022753m.g Citrus clementina HOM05D000135 ORTHO05D000816 4.3e-08 62.0 45 62.2
Haze_14848 Corylus avellana HOM05D000135 ORTHO05D000816 5.6e-08 61.6 47 61.7
Duzib205G1548 Durio zibethinus HOM05D000135 ORTHO05D000816 5.6e-08 61.6 42 69.0
Glyma.06G171150 Glycine max HOM05D000135 ORTHO05D000816 5.6e-08 61.6 41 68.3
Glyma.04G194800 Glycine max HOM05D000135 ORTHO05D000816 7.3e-08 61.2 41 68.3
Lalb_Chr12g0202161 Lupinus albus HOM05D000135 ORTHO05D000816 7.3e-08 61.2 40 72.5
Manes.17G104400 Manihot esculenta HOM05D000135 ORTHO05D000816 7.3e-08 61.2 50 58.0
Medtr4g103655 Medicago truncatula HOM05D000135 ORTHO05D000816 7.3e-08 61.2 43 65.1
Psat0s3961g0120 Pisum sativum HOM05D000135 ORTHO05D000816 7.3e-08 61.2 43 65.1
Psat0s3961g0080 Pisum sativum HOM05D000135 ORTHO05D000816 9.5e-08 60.8 42 66.7
Cfa021347 Carpinus fangiana HOM05D000135 ORTHO05D000816 1.2e-07 60.5 47 61.7
Medtr4g103630 Medicago truncatula HOM05D000135 ORTHO05D000816 1.2e-07 60.5 43 62.8
QL02p016429 Quercus lobata HOM05D000135 ORTHO05D000816 1.2e-07 60.5 46 60.9
Rhsim10G0008000 Rhododendron simsii HOM05D000135 ORTHO05D000816 1.2e-07 60.5 49 59.2
TAR622G0218 Trochodendron aralioides HOM05D000135 ORTHO05D000816 1.2e-07 60.5 44 65.9
Medtr3g089070 Medicago truncatula HOM05D000135 ORTHO05D000816 1.6e-07 60.1 44 61.4
Medtr3g089090 Medicago truncatula HOM05D000135 ORTHO05D000816 1.6e-07 60.1 44 61.4
QL02p071822 Quercus lobata HOM05D000135 ORTHO05D000816 1.6e-07 60.1 43 67.4
Atru.chr6.2532 Acer truncatum HOM05D000135 ORTHO05D000816 2.1e-07 59.7 43 67.4
TAR629G1517 Trochodendron aralioides HOM05D000135 ORTHO05D000816 2.1e-07 59.7 47 63.8
Duzib068G0781 Durio zibethinus HOM05D000135 ORTHO05D000816 2.8e-07 59.3 43 67.4
SalBow1G7946 Salvia bowleyana HOM05D000135 ORTHO05D000816 2.8e-07 59.3 42 64.3
SalBow7G1515 Salvia bowleyana HOM05D000135 ORTHO05D000816 2.8e-07 59.3 42 64.3
Gohir.A03G053400 Gossypium hirsutum HOM05D000135 ORTHO05D000816 3.6e-07 58.9 43 65.1
QL02p016339 Quercus lobata HOM05D000135 ORTHO05D000816 3.6e-07 58.9 46 60.9
QL02p016392 Quercus lobata HOM05D000135 ORTHO05D000816 3.6e-07 58.9 47 59.6
Sabra15G0115400 Salix brachista HOM05D000135 ORTHO05D000816 3.6e-07 58.9 47 59.6
Duzib147G0709 Durio zibethinus HOM05D000135 ORTHO05D000816 4.7e-07 58.5 47 59.6
Hma1.2p1_1219F.1_g267950 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 4.7e-07 58.5 46 60.9
Psat1g085520 Pisum sativum HOM05D000135 ORTHO05D000816 4.7e-07 58.5 50 56.0
Potri.002G132500 Populus trichocarpa HOM05D000135 ORTHO05D000816 4.7e-07 58.5 44 63.6
SalBow1G2517 Salvia bowleyana HOM05D016915 ORTHO05D000816 4.7e-07 58.5 42 64.3
SalBow7G4752 Salvia bowleyana HOM05D016915 ORTHO05D000816 4.7e-07 58.5 42 64.3
FvH4_6g53150 Fragaria vesca HOM05D000135 ORTHO05D000816 6.2e-07 58.2 44 65.9
FAN14G0778 Fragaria x ananassa HOM05D000135 ORTHO05D000816 6.2e-07 58.2 44 65.9
Psat0s14g0160 Pisum sativum HOM05D000135 ORTHO05D000816 6.2e-07 58.2 44 59.1
QL02p016421 Quercus lobata HOM05D000135 ORTHO05D000816 6.2e-07 58.2 47 57.4
Sabra02G0103700 Salix brachista HOM05D000135 ORTHO05D000816 6.2e-07 58.2 44 63.6
Actinidia05909 Actinidia chinensis HOM05D000135 ORTHO05D000816 8.1e-07 57.8 42 66.7
COL.COLO4_17166 Corchorus olitorius HOM05D000135 ORTHO05D000816 8.1e-07 57.8 47 59.6
Glyma.18G177900 Glycine max HOM05D000135 ORTHO05D000816 8.1e-07 57.8 41 63.4
MD17G1014200 Malus domestica HOM05D000135 ORTHO05D000816 8.1e-07 57.8 44 65.9
Psat4g065400 Pisum sativum HOM05D000135 ORTHO05D000816 8.1e-07 57.8 43 62.8
Rhsim08G0044100 Rhododendron simsii HOM05D000135 ORTHO05D000816 8.1e-07 57.8 42 61.9
CANSAT64G0052 Cannabis sativa HOM05D000135 ORTHO05D000816 1.1e-06 57.4 47 57.4
Dinv14818 Davidia involucrata HOM05D000135 ORTHO05D000816 1.1e-06 57.4 50 48.0
FAN02G0421 Fragaria x ananassa HOM05D000135 ORTHO05D000816 1.1e-06 57.4 44 63.6
Psat5g140800 Pisum sativum HOM05D000135 ORTHO05D000816 1.1e-06 57.4 44 56.8
Potri.001G332900 Populus trichocarpa HOM05D000135 ORTHO05D000816 1.1e-06 57.4 47 59.6
VMungo1309G1946 Vigna mungo HOM05D000135 ORTHO05D000816 1.1e-06 57.4 40 65.0
GSVIVG01010385001 Vitis vinifera HOM05D000135 ORTHO05D000816 1.1e-06 57.4 42 64.3
Ciclev10018267m.g Citrus clementina HOM05D000135 ORTHO05D000816 1.4e-06 57.0 43 65.1
Nitab4.5_0002498g0070 Nicotiana tabacum HOM05D000135 ORTHO05D000816 1.4e-06 57.0 47 53.2
Peaxi162Scf00098g00156 Petunia axillaris HOM05D000135 ORTHO05D000816 1.4e-06 57.0 43 58.1
Phvul.005G026000 Phaseolus vulgaris HOM05D000135 ORTHO05D000816 1.4e-06 57.0 42 61.9
SGA_v2.0_scaffold47G17572 Striga asiatica HOM05D000135 ORTHO05D000816 1.4e-06 57.0 43 60.5
VMungo1215G1953 Vigna mungo HOM05D000135 ORTHO05D000816 1.4e-06 57.0 39 64.1
Prupe.3G303600 Prunus persica HOM05D000135 ORTHO05D000816 1.8e-06 56.6 44 63.6
SalBow7G4318 Salvia bowleyana HOM05D016915 ORTHO05D000816 1.8e-06 56.6 42 61.9
GSVIVG01010383001 Vitis vinifera HOM05D000135 ORTHO05D000816 1.8e-06 56.6 42 61.9
CSS0033756 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000816 2.4e-06 56.2 49 57.1
Ca_24507_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000816 2.4e-06 56.2 44 59.1
FvH4_5g26790 Fragaria vesca HOM05D000135 ORTHO05D000816 2.4e-06 56.2 48 52.1
FAN04G2622 Fragaria x ananassa HOM05D000135 ORTHO05D000816 2.4e-06 56.2 48 52.1
FAN08G1719 Fragaria x ananassa HOM05D000135 ORTHO05D000816 2.4e-06 56.2 48 52.1
FAN13G2467 Fragaria x ananassa HOM05D000135 ORTHO05D000816 2.4e-06 56.2 48 52.1
FAN18G1887 Fragaria x ananassa HOM05D000135 ORTHO05D000816 2.4e-06 56.2 48 52.1
Nitab4.5_0000875g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000816 2.4e-06 56.2 40 62.5
Nitab4.5_0002183g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000816 2.4e-06 56.2 40 62.5
Phvul.003G210000 Phaseolus vulgaris HOM05D000135 ORTHO05D000816 2.4e-06 56.2 42 59.5
Phvul.005G026100 Phaseolus vulgaris HOM05D000135 ORTHO05D000816 2.4e-06 56.2 42 61.9
SalBow1G3513 Salvia bowleyana HOM05D016915 ORTHO05D000816 2.4e-06 56.2 42 61.9
Solyc06g073830.1 Solanum lycopersicum HOM05D000135 ORTHO05D000816 2.4e-06 56.2 47 53.2
TWI12G0256 Tripterygium wilfordii HOM05D000135 ORTHO05D000816 2.4e-06 56.2 43 65.1
GSVIVG01010378001 Vitis vinifera HOM05D000135 ORTHO05D000816 2.4e-06 56.2 42 61.9
Hma1.2p1_1219F.1_g267940 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 3.1e-06 55.8 42 61.9
MD09G1013600 Malus domestica HOM05D000135 ORTHO05D000816 3.1e-06 55.8 44 63.6
Nitab4.5_0007815g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 3.1e-06 55.8 47 53.2
Sopen06g030230 Solanum pennellii HOM05D000135 ORTHO05D000816 3.1e-06 55.8 42 59.5
PGSC0003DMG400005909 Solanum tuberosum HOM05D000135 ORTHO05D000816 3.1e-06 55.8 42 59.5
TPR.G39344 Trifolium pratense HOM05D000135 ORTHO05D000816 3.1e-06 55.8 50 54.0
GSVIVG01008516001 Vitis vinifera HOM05D000135 ORTHO05D000816 3.1e-06 55.8 43 62.8
CAN.G1463.22 Capsicum annuum HOM05D000135 ORTHO05D000816 4.0e-06 55.5 42 59.5
Gohir.A07G051650 Gossypium hirsutum HOM05D000135 ORTHO05D000816 4.0e-06 55.5 43 65.1
Gohir.D07G056100 Gossypium hirsutum HOM05D000135 ORTHO05D000816 4.0e-06 55.5 43 65.1
Gorai.001G059500 Gossypium raimondii HOM05D000135 ORTHO05D000816 4.0e-06 55.5 43 65.1
Potri.005G259900 Populus trichocarpa HOM05D000135 ORTHO05D000816 4.0e-06 55.5 42 59.5
Prupe.5G000600 Prunus persica HOM05D000135 ORTHO05D000816 4.0e-06 55.5 50 52.0
Eucgr.J02318 Eucalyptus grandis HOM05D000135 ORTHO05D000816 5.2e-06 55.1 42 61.9
Gohir.D04G078000 Gossypium hirsutum HOM05D000135 ORTHO05D000816 5.2e-06 55.1 43 60.5
Gorai.012G087800 Gossypium raimondii HOM05D000135 ORTHO05D000816 5.2e-06 55.1 43 60.5
RcHm_v2.0_Chr7g0217701 Rosa chinensis HOM05D000135 ORTHO05D000816 5.2e-06 55.1 48 50.0
Migut.K01452 Erythranthe guttata HOM05D016915 ORTHO05D000816 6.8e-06 54.7 42 59.5
Oeu035215.1 Olea europaea HOM05D000135 ORTHO05D000816 6.8e-06 54.7 42 61.9
RcHm_v2.0_Chr2g0175201 Rosa chinensis HOM05D000135 ORTHO05D000816 6.8e-06 54.7 44 63.6
vmacro05943 Vaccinium macrocarpon HOM05D000135 ORTHO05D000816 6.8e-06 54.7 42 64.3
CiPaw.07G129800 Carya illinoinensis HOM05D000135 ORTHO05D000816 8.9e-06 54.3 43 55.8
Haze_07233 Corylus avellana HOM05D000135 ORTHO05D000816 8.9e-06 54.3 43 65.1


User provided reference genes

Program Settings