Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 1.6e-103 379.4 187 100.0
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 2.4e-99 365.5 187 95.7
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 9.0e-99 363.6 187 95.2
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 9.0e-99 363.6 187 95.2
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 4.6e-95 351.3 187 90.4
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 89.3
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 89.3
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 89.3
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 1.3e-94 349.7 187 89.8
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 88.8
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 89.8
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 88.2
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 88.8
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 88.8
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 2.5e-93 345.5 187 88.2
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 4.3e-93 344.7 187 88.8
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 4.3e-93 344.7 187 88.8
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 88.2
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 88.2
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 88.2
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 88.2
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 88.2
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 9.6e-93 343.6 187 88.8
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 9.6e-93 343.6 187 88.2
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 87.7
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 2.8e-92 342.0 187 87.7
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 3.7e-92 341.7 241 74.3
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 87.2
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 88.2
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 88.2
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 3.7e-92 341.7 186 87.6
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 87.7
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 87.2
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 4.8e-92 341.3 200 83.5
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 87.7
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 88.2
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 87.7
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 4.8e-92 341.3 183 90.2
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 6.2e-92 340.9 187 87.2
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 6.2e-92 340.9 187 86.1
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 8.2e-92 340.5 187 86.6
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 8.2e-92 340.5 187 86.6
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 87.2
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 88.2
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 87.2
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 87.2
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 87.7
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.4e-91 339.7 184 88.6
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 1.4e-91 339.7 187 87.7
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 1.4e-91 339.7 187 88.2
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 1.4e-91 339.7 187 88.2
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 1.8e-91 339.3 187 86.6
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 1.8e-91 339.3 187 87.7
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 1.8e-91 339.3 187 87.7
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 1.8e-91 339.3 187 87.2
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 2.4e-91 339.0 187 86.1
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 3.1e-91 338.6 187 85.6
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 3.1e-91 338.6 187 86.6
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 3.1e-91 338.6 187 87.2
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 87.2
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 87.2
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 87.2
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 86.1
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 5.3e-91 337.8 187 86.1
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 5.3e-91 337.8 187 86.6
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 5.3e-91 337.8 187 87.2
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 6.9e-91 337.4 187 86.1
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 6.9e-91 337.4 187 85.6
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 9.0e-91 337.0 187 86.1
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 1.2e-90 336.7 187 86.1
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 1.5e-90 336.3 187 86.1
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 2.6e-90 335.5 187 86.6
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 4.5e-90 334.7 187 85.6
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 5.8e-90 334.3 186 86.0
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 7.6e-90 334.0 187 85.6
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 1.0e-89 333.6 187 85.0
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 1.3e-89 333.2 196 83.7
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 1.7e-89 332.8 187 86.1
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 2.2e-89 332.4 187 85.6
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 2.2e-89 332.4 187 84.5
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 2.2e-89 332.4 187 84.5
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 2.2e-89 332.4 187 84.0
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 2.9e-89 332.0 187 84.0
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 3.8e-89 331.6 187 84.5
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 3.8e-89 331.6 187 83.4
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 3.8e-89 331.6 187 85.0
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 6.5e-89 330.9 187 83.4
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 6.5e-89 330.9 187 85.0
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 6.5e-89 330.9 187 84.0
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 8.4e-89 330.5 187 83.4
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 8.4e-89 330.5 187 84.5
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 1.1e-88 330.1 187 84.0
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 1.1e-88 330.1 187 83.4
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 1.1e-88 330.1 187 85.6
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.1e-88 330.1 188 84.0
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.1e-88 330.1 188 84.0
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 1.1e-88 330.1 187 84.5
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 1.4e-88 329.7 201 81.6
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 1.9e-88 329.3 186 86.6
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 1.9e-88 329.3 186 83.9
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 1.9e-88 329.3 187 84.0
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 3.2e-88 328.6 187 82.9
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 4.2e-88 328.2 187 84.0
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 7.1e-88 327.4 187 82.4
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 7.1e-88 327.4 187 82.4
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 7.1e-88 327.4 187 82.4
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 7.1e-88 327.4 187 82.4
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 7.1e-88 327.4 193 82.4
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 1.2e-87 326.6 206 79.1
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 2.1e-87 325.9 187 81.8
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 1.0e-86 323.6 187 82.9
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 1.3e-86 323.2 203 78.3
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 2.3e-86 322.4 208 77.4
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 5.1e-86 321.2 181 84.0
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 8.7e-86 320.5 183 84.7
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 1.1e-85 320.1 187 81.8
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 7.4e-85 317.4 185 80.5
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 7.4e-85 317.4 211 76.3
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 9.7e-85 317.0 187 81.3
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 1.6e-84 316.2 206 75.2
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 4.2e-80 301.6 173 82.7
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 5.5e-80 301.2 169 84.6
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 1.8e-78 296.2 178 81.5
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 3.9e-78 295.0 187 74.9
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 8.8e-78 293.9 181 75.1
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 8.8e-78 293.9 181 75.1
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 2.2e-76 289.3 187 73.8
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.8e-76 288.9 181 74.0
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 4.8e-76 288.1 187 78.1
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 5.3e-75 284.6 186 73.7
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.2e-74 283.5 187 75.4
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.5e-74 283.1 172 76.2
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 2.9e-73 278.9 184 76.6
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 2.9e-73 278.9 187 74.9
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 4.2e-72 275.0 159 83.0
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 7.2e-72 274.2 180 72.2
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 4.7e-71 271.6 154 83.1
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 3.9e-70 268.5 187 71.7
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 1.1e-69 266.9 149 85.9
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 9.7e-69 263.8 187 71.7
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 1.7e-68 263.1 148 83.8
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 1.1e-64 250.4 158 76.6
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 2.1e-63 246.1 165 67.9
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 2.6e-61 239.2 187 66.8
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 6.3e-60 234.6 185 60.0
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 7.7e-58 227.6 187 63.1
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 8.0e-55 217.6 124 83.1
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 9.8e-53 210.7 127 78.0
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 5.0e-49 198.4 103 89.3
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 8.0e-47 191.0 167 53.3
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 2.3e-46 189.5 97 89.7
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 6.8e-46 188.0 175 53.1
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 1.2e-45 187.2 102 86.3
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 9.8e-45 184.1 106 84.0
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 6.3e-44 181.4 181 55.8
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 6.3e-44 181.4 103 82.5
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 3.8e-41 172.2 97 79.4
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 2.4e-35 152.9 85 88.2
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 2.9e-28 129.4 142 52.1
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 6.4e-20 101.7 68 67.6
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 5.1e-17 92.0 52 86.5
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 6.6e-17 91.7 52 88.5
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 1.2e-15 87.4 49 87.8
Actinidia19733 Actinidia chinensis HOM05D004191 ORTHO05D004887 3.1e-14 82.8 41 92.7
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 5.8e-13 78.6 45 84.4
Ah.07g199550 Amaranthus hybridus HOM05D004191 ORTHO05D004887 6.4e-12 75.1 41 85.4
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 1.1e-11 74.3 76 55.3
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 1.9e-11 73.6 68 57.4
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 4.1e-11 72.4 47 74.5
Ah.07g199480 Amaranthus hybridus HOM05D004191 ORTHO05D060174 7.1e-11 71.6 39 82.1


User provided reference genes

Program Settings