Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 9.0e-78 293.9 193 100.0
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 2.2e-60 236.1 206 73.3
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.9e-59 233.0 208 71.6
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 7.2e-59 231.1 206 71.4
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 5.5e-35 151.8 193 52.8
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 2.1e-34 149.8 197 54.3
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 2.1e-34 149.8 212 49.5
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 2.8e-34 149.4 193 50.8
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 8.0e-34 147.9 193 45.1
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.0e-33 147.5 193 51.3
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 1.8e-33 146.7 193 48.7
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 3.0e-33 146.0 188 53.2
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 6.8e-33 144.8 193 52.8
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 1.5e-32 143.7 198 46.0
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 2.0e-32 143.3 193 51.8
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 2.6e-32 142.9 193 48.2
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 2.6e-32 142.9 194 46.4
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 9.8e-32 141.0 193 52.3
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 9.8e-32 141.0 193 52.3
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 1.7e-31 140.2 193 58.0
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.7e-31 140.2 191 49.7
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.8e-31 139.4 196 51.0
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.8e-31 139.4 194 54.1
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 3.7e-31 139.0 201 43.3
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 4.9e-31 138.7 196 49.5
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 4.9e-31 138.7 202 46.5
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 4.9e-31 138.7 198 52.0
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 8.3e-31 137.9 196 50.5
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.1e-30 137.5 205 46.3
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.4e-30 137.1 193 54.4
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 1.8e-30 136.7 201 49.8
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 3.2e-30 136.0 205 56.1
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 4.1e-30 135.6 205 48.8
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 7.0e-30 134.8 216 49.5
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 7.0e-30 134.8 213 51.6
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 1.2e-29 134.0 202 56.9
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.2e-29 134.0 218 48.6
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 1.2e-29 134.0 213 46.5
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 1.6e-29 133.7 206 52.4
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.6e-29 133.7 219 47.9
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 2.7e-29 132.9 191 59.7
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 3.5e-29 132.5 199 50.8
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 5.9e-29 131.7 197 57.4
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 5.9e-29 131.7 194 53.1
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 7.8e-29 131.3 198 57.6
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 1.0e-28 131.0 203 53.7
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.3e-28 130.6 191 48.7
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 1.7e-28 130.2 214 54.7
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 1.7e-28 130.2 243 46.1
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 2.3e-28 129.8 207 50.7
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 2.3e-28 129.8 187 42.2
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 2.3e-28 129.8 187 40.6
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 2.3e-28 129.8 208 49.0
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 2.3e-28 129.8 196 54.1
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 2.9e-28 129.4 194 57.7
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.9e-28 129.4 213 48.8
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 6.6e-28 128.3 208 52.9
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 6.6e-28 128.3 186 43.0
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 8.6e-28 127.9 197 42.6
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 8.6e-28 127.9 192 57.8
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-27 127.5 189 58.2
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.1e-27 127.5 189 52.9
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.5e-27 127.1 181 56.9
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 1.9e-27 126.7 151 58.9
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 2.5e-27 126.3 202 55.9
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 2.5e-27 126.3 191 57.1
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 2.5e-27 126.3 191 57.1
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 2.5e-27 126.3 189 58.2
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 2.5e-27 126.3 198 54.0
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 5.6e-27 125.2 206 53.9
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 5.6e-27 125.2 132 55.3
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 9.5e-27 124.4 194 57.2
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 1.2e-26 124.0 215 52.6
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.2e-26 124.0 215 46.5
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.2e-26 124.0 215 46.5
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 1.6e-26 123.6 200 56.5
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 1.6e-26 123.6 203 55.7
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 3.6e-26 122.5 192 57.3
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 3.6e-26 122.5 203 54.7
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 3.6e-26 122.5 202 54.5
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 3.6e-26 122.5 211 53.6
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 4.7e-26 122.1 223 38.1
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 6.1e-26 121.7 186 49.5
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 6.1e-26 121.7 213 37.1
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 8.0e-26 121.3 196 56.1
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 8.0e-26 121.3 142 66.2
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 8.0e-26 121.3 193 53.4
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 1.0e-25 120.9 207 54.6
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 1.0e-25 120.9 207 54.6
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 1.4e-25 120.6 230 51.3
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.4e-25 120.6 205 50.7
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 1.8e-25 120.2 208 49.0
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.3e-25 119.8 191 49.7
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 1.2e-24 117.5 213 52.6
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 1.2e-24 117.5 197 53.3
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.6e-24 116.3 141 64.5
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 2.6e-24 116.3 187 58.8
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 2.6e-24 116.3 194 56.7
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 2.6e-24 116.3 133 59.4
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 3.4e-24 115.9 205 41.0
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 4.4e-24 115.5 217 51.6
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 4.4e-24 115.5 214 43.0
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 9.8e-24 114.4 216 52.3
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 9.8e-24 114.4 199 37.7
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 2.9e-23 112.8 213 43.2
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 2.9e-23 112.8 196 60.2
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 3.7e-23 112.5 229 54.1
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 4.9e-23 112.1 210 41.4
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 4.9e-23 112.1 131 60.3
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 6.4e-23 111.7 205 44.9
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 6.4e-23 111.7 240 44.6
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 1.1e-22 110.9 216 42.1
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.9e-22 110.2 189 39.7
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 2.4e-22 109.8 237 40.5
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 2.4e-22 109.8 209 37.8
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.2e-22 109.4 212 50.9
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 3.2e-22 109.4 142 58.5
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 4.1e-22 109.0 123 50.4
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 4.1e-22 109.0 123 50.4
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 4.1e-22 109.0 158 58.2
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 4.1e-22 109.0 130 67.7
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 5.4e-22 108.6 185 43.2
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 7.0e-22 108.2 129 58.9
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 9.2e-22 107.8 198 40.4
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 1.2e-21 107.5 135 68.9
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.6e-21 107.1 135 67.4
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 2.0e-21 106.7 220 50.5
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 2.7e-21 106.3 186 53.2
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 3.5e-21 105.9 154 38.3
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 4.6e-21 105.5 129 48.1
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 4.6e-21 105.5 234 33.3
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 6.0e-21 105.1 188 35.6
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 6.0e-21 105.1 128 57.8
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 6.0e-21 105.1 206 40.3
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.0e-20 104.4 143 41.3
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 1.0e-20 104.4 129 57.4
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 1.0e-20 104.4 212 49.5
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 1.3e-20 104.0 128 52.3
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 3.0e-20 102.8 199 37.7
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 3.9e-20 102.4 194 48.5
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 3.9e-20 102.4 216 49.1
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 6.6e-20 101.7 146 39.7
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 6.6e-20 101.7 217 38.2
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.5e-19 99.8 151 41.7
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 3.3e-19 99.4 137 44.5
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 5.6e-19 98.6 196 36.7
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 7.3e-19 98.2 171 34.5
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 1.2e-18 97.4 129 58.1
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 1.6e-18 97.1 123 47.2
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 1.6e-18 97.1 123 47.2
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 1.6e-18 97.1 123 47.2
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 4.7e-18 95.5 129 57.4
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 6.2e-18 95.1 129 57.4
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-17 94.4 130 60.8
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-17 94.4 130 60.8
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 1.4e-17 94.0 130 60.0
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 1.4e-17 94.0 130 60.0
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.3e-15 87.4 148 34.5
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 1.6e-13 80.5 136 41.9
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 1.6e-13 80.5 108 45.4
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.6e-13 80.5 159 32.7
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 3.5e-13 79.3 196 40.8
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.3e-12 77.4 196 40.3
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 2.3e-12 76.6 130 56.9
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 5.1e-12 75.5 196 40.3
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.5e-11 73.2 166 30.7
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.8e-09 67.0 219 30.6
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.2e-08 64.3 113 46.0
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 3.4e-08 62.8 36 75.0
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 5.8e-08 62.0 47 55.3
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 1.7e-07 60.5 41 61.0
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.7e-07 60.5 196 26.0
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 4.9e-07 58.9 130 31.5
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 6.4e-07 58.5 124 32.3
MBI01_g34424_MAGBIO Magnolia biondii HOM05D001667 ORTHO05D001508 1.1e-06 57.8 144 26.4
Pp3c16_12300 Physcomitrium patens HOM05D013579 ORTHO05D001508 7.1e-06 55.1 40 60.0
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 9.2e-06 54.7 40 60.0


User provided reference genes

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