Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 2281.5 1168 100.0
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 2053.5 1168 89.4
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 2051.9 1168 89.0
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1964.5 1148 87.5
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1830.1 1171 79.7
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1829.3 1171 79.6
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1826.2 1170 79.1
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1821.2 1171 79.1
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1818.9 1171 79.2
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1817.4 1170 78.9
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1798.9 1170 78.6
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1789.2 1170 78.1
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1786.5 1169 77.7
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1782.3 1171 78.1
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1778.5 1168 77.4
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1775.4 1171 78.0
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1775.4 1170 77.5
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1775.0 1170 78.1
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1771.9 1171 77.9
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1770.7 1180 76.9
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1770.0 1170 77.6
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1765.7 1173 77.5
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1758.8 1180 76.6
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1755.3 1170 76.7
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1748.0 1169 76.4
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1748.0 1169 76.4
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1746.9 1171 76.9
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1746.1 1214 74.4
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1744.9 1218 74.2
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1744.6 1168 76.6
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1742.2 1218 74.1
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1740.3 1169 76.7
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1739.9 1170 75.8
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1738.0 1169 76.3
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1737.6 1168 76.5
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1737.6 1169 76.0
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1736.9 1169 76.1
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1736.5 1218 74.0
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1731.5 1193 75.3
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1731.1 1224 72.9
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1728.0 1163 75.7
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1724.9 1170 75.8
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1724.5 1171 75.7
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1724.1 1206 73.8
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1723.0 1206 73.8
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1722.6 1207 73.8
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1722.2 1170 76.5
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1721.1 1211 74.1
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1718.0 1193 75.0
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1716.0 1170 76.3
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1713.7 1169 75.6
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1713.0 1170 76.2
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1710.3 1167 75.7
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1709.5 1172 75.4
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1708.3 1227 72.5
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1708.3 1170 74.8
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1705.3 1170 74.3
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1699.1 1171 75.0
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1697.9 1168 74.7
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1691.8 1174 74.9
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1691.4 1168 74.7
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1690.6 1179 73.8
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1688.7 1174 73.9
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1682.2 1170 74.4
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1675.6 1173 73.7
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1675.2 1229 71.4
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1671.4 1202 72.5
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1670.6 1170 73.8
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1669.8 1158 73.9
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1668.7 1171 73.8
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1663.3 1168 73.5
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1662.5 1171 72.8
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1661.7 1170 72.6
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1654.0 1170 74.0
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1654.0 1170 73.3
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1652.1 1231 69.9
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1651.0 1167 72.9
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1649.4 1174 71.7
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1647.1 1168 73.0
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1647.1 1201 71.9
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1639.8 1173 73.0
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1639.8 1175 72.2
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1638.2 1172 72.5
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1637.5 1168 73.2
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1636.7 1172 72.4
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1636.3 1173 72.5
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1635.2 1173 72.1
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1634.0 1175 72.1
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1631.7 1230 69.7
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1630.5 1174 72.1
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1626.7 1171 71.9
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1626.3 1206 71.4
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1625.9 1189 71.9
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1624.0 1168 73.0
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1623.6 1174 71.9
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1623.2 1170 71.9
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1622.4 1098 75.8
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1622.4 1173 72.6
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1615.5 1174 71.5
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1614.4 1179 70.7
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1613.2 1169 71.9
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1612.0 1178 71.1
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1607.0 1072 77.0
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1603.6 1176 71.6
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1598.6 1174 70.5
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1598.2 1173 72.3
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1593.2 1175 70.6
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1567.0 1169 70.1
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1565.8 1186 69.7
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1559.7 1145 70.3
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1545.4 1201 68.2
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1543.1 1184 68.9
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1526.9 1177 67.7
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1524.2 1179 67.8
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1522.3 1177 67.4
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1497.3 1108 70.9
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1490.7 1180 66.4
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1488.0 1172 66.3
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1439.1 947 77.1
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1432.5 1169 65.9
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1419.4 947 76.3
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1389.0 1037 71.7
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1383.6 1074 68.5
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1380.5 949 75.0
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1318.1 970 71.6
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1246.1 957 69.5
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1223.0 886 71.9
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1220.7 976 67.8
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1205.3 1173 58.1
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1187.9 967 66.4
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1156.7 812 74.3
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1144.4 807 73.9
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1115.1 810 72.5
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1105.1 804 72.6
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 3.1e-306 1055.4 1164 53.5
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 3.7e-299 1031.9 721 74.1
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 8.5e-280 967.6 1177 47.2
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 1.4e-277 960.3 1209 46.3
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 2.4e-258 896.3 540 83.0
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 1.4e-253 880.6 603 75.6
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.3e-251 874.0 715 64.6
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 3.3e-183 646.7 432 75.7
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 5.2e-160 569.7 360 80.0
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 2.4e-133 481.1 901 38.5
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 4.3e-130 470.3 306 75.2
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 4.3e-130 470.3 305 74.8
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.2e-129 468.8 307 74.9
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 2.3e-120 438.0 807 36.2
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 2.2e-118 431.4 616 45.0
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 6.0e-116 423.3 282 75.2
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 2.3e-107 394.8 1319 29.7
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 2.6e-87 328.2 227 68.7
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.1e-84 318.5 511 41.9
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 2.6e-79 301.6 279 60.6
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 4.2e-77 294.3 197 72.1
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 6.0e-76 290.4 203 71.9
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 3.8e-70 271.2 182 70.9
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 2.7e-68 265.0 187 69.0
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 3.0e-67 261.5 257 58.4
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 5.3e-64 250.8 192 67.7
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 3.6e-60 238.0 144 81.9
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 2.6e-58 231.9 183 65.0
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 2.3e-51 208.8 130 81.5
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 2.3e-51 208.8 152 69.7
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 1.2e-47 196.4 118 83.9
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.9e-45 189.1 125 74.4
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 1.9e-37 162.5 92 89.1
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 4.0e-27 128.3 95 69.5
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 4.0e-27 128.3 95 69.5
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 6.8e-27 127.5 90 73.3
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 1.6e-20 106.3 83 67.5
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 2.8e-20 105.5 78 69.2
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 4.9e-17 94.7 54 74.1
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 1.9e-16 92.8 47 78.7
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 1.0e-14 87.0 59 71.2
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 4.7e-12 78.2 79 49.4
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 1.4e-11 76.6 114 42.1


User provided reference genes

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