Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 5.2e-190 667.5 331 100.0
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 4.6e-146 521.5 400 70.8
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 4.3e-136 488.4 401 68.1
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 2.8e-135 485.7 401 67.8
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 2.0e-133 479.6 388 69.1
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 6.0e-106 388.3 306 66.3
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.8e-105 386.7 290 69.3
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.6e-101 372.9 392 54.8
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 4.5e-101 372.1 397 54.4
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 1.0e-100 370.9 330 62.4
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 2.9e-100 369.4 354 58.5
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 2.9e-100 369.4 354 58.5
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 2.9e-100 369.4 308 63.6
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 1.4e-99 367.1 351 58.7
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 1.4e-99 367.1 358 58.4
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 1.9e-99 366.7 307 63.2
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 2.5e-99 366.3 337 59.1
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 3.2e-99 365.9 409 51.6
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 4.2e-99 365.5 338 58.9
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 4.2e-99 365.5 311 63.0
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 4.2e-99 365.5 391 57.0
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 7.2e-99 364.8 342 59.6
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 7.2e-99 364.8 337 59.9
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 9.3e-99 364.4 339 58.7
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 9.3e-99 364.4 303 64.0
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 1.6e-98 363.6 322 61.2
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 1.6e-98 363.6 335 60.6
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 1.6e-98 363.6 322 60.6
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 4.6e-98 362.1 302 63.2
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 4.6e-98 362.1 335 58.2
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 6.1e-98 361.7 303 63.7
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 7.9e-98 361.3 404 53.2
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.3e-97 360.5 333 60.4
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 1.3e-97 360.5 330 60.6
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 2.3e-97 359.8 392 54.8
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 3.0e-97 359.4 388 52.6
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 3.9e-97 359.0 347 58.2
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 5.1e-97 358.6 340 58.5
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 5.1e-97 358.6 314 61.5
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 1.5e-96 357.1 333 60.1
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 1.5e-96 357.1 329 58.7
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 2.5e-96 356.3 370 57.0
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 3.3e-96 355.9 297 63.6
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.3e-96 355.5 330 59.7
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 5.7e-96 355.1 337 59.1
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 2.2e-95 353.2 350 56.9
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 4.8e-95 352.1 304 60.9
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 8.2e-95 351.3 321 61.4
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 3.1e-94 349.4 301 62.8
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 3.1e-94 349.4 407 52.8
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 4.1e-94 349.0 392 51.8
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 1.5e-93 347.1 375 51.7
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 3.4e-93 345.9 374 53.5
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.0e-92 344.4 355 54.6
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 1.7e-92 343.6 385 50.9
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 2.2e-92 343.2 355 54.1
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 2.9e-92 342.8 376 51.9
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 5.0e-92 342.0 379 52.2
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 3.2e-91 339.3 332 58.1
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 1.6e-90 337.0 376 52.1
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 2.1e-90 336.7 324 56.8
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 2.1e-90 336.7 295 60.7
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 2.7e-90 336.3 377 50.7
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 3.6e-90 335.9 376 51.9
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 3.6e-90 335.9 339 56.0
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 3.6e-90 335.9 332 57.5
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.4e-89 334.0 390 50.0
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 6.7e-89 331.6 340 55.0
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 6.7e-89 331.6 392 49.0
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 1.1e-88 330.9 392 50.0
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 2.0e-88 330.1 333 54.1
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 2.0e-88 330.1 333 54.1
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 5.7e-88 328.6 307 60.3
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 7.4e-88 328.2 397 49.9
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 7.4e-88 328.2 316 58.9
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 1.4e-86 323.9 371 50.4
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 9.1e-86 321.2 349 51.3
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 1.2e-85 320.9 277 62.8
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 2.6e-85 319.7 330 54.2
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 3.4e-85 319.3 372 53.0
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 1.4e-83 313.9 388 50.3
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 2.5e-83 313.2 290 59.3
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 5.5e-83 312.0 339 51.9
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 7.9e-82 308.1 304 55.3
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 2.3e-81 306.6 351 49.0
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 3.9e-81 305.8 277 59.2
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 4.4e-80 302.4 320 51.9
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 1.7e-79 300.4 354 50.0
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 8.2e-79 298.1 249 66.3
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 1.8e-78 297.0 381 48.3
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 4.1e-78 295.8 257 63.4
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 4.5e-77 292.4 331 47.4
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.0e-76 291.2 395 46.3
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 1.3e-76 290.8 297 53.5
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 5.0e-76 288.9 281 57.3
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 1.1e-75 287.7 383 47.5
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 4.2e-75 285.8 335 51.0
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 5.5e-75 285.4 372 47.3
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 9.4e-75 284.6 298 52.3
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 8.0e-74 281.6 334 50.6
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 8.0e-74 281.6 334 50.6
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 8.0e-74 281.6 334 50.6
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 1.4e-73 280.8 297 52.5
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 4.0e-73 279.3 300 52.0
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.5e-72 277.3 300 51.0
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.6e-72 276.6 297 51.5
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 7.5e-72 275.0 289 52.6
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.7e-71 273.9 300 51.3
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 8.2e-71 271.6 242 61.2
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 1.4e-70 270.8 245 60.8
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 1.8e-70 270.4 302 51.3
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 2.4e-70 270.0 305 52.5
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 2.7e-69 266.5 308 51.9
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 4.2e-67 259.2 254 56.7
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 7.2e-67 258.5 236 61.0
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 1.2e-66 257.7 358 45.5
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 6.1e-66 255.4 284 54.9
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 4.8e-63 245.7 288 50.3
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 4.8e-63 245.7 215 63.3
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 1.3e-60 237.7 215 61.9
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 8.5e-60 235.0 201 61.7
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.1e-59 234.6 331 45.6
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 1.0e-57 228.0 236 54.2
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 6.8e-57 225.3 284 47.9
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.2e-56 224.6 362 43.6
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 7.5e-56 221.9 330 40.3
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 9.8e-56 221.5 181 63.0
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 4.1e-54 216.1 229 53.7
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.7e-52 210.7 164 62.8
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 3.3e-51 206.5 293 42.7
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 1.0e-49 201.4 220 54.1
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 2.2e-47 193.7 332 37.7
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.2e-47 193.7 204 53.9
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 7.8e-45 185.3 255 46.7
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 6.6e-44 182.2 237 46.0
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 7.3e-43 178.7 172 57.0
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 7.3e-43 178.7 205 51.2
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 1.6e-42 177.6 173 58.4
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 2.8e-42 176.8 182 53.8
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 6.2e-42 175.6 164 62.8
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 1.8e-41 174.1 231 46.8
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 5.2e-41 172.6 215 47.9
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 4.9e-39 166.0 192 54.2
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 6.4e-39 165.6 176 50.6
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 1.6e-37 161.0 160 53.8
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 4.6e-37 159.5 202 45.0
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 8.6e-36 155.2 187 47.6
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 1.5e-35 154.5 178 53.4
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 3.3e-35 153.3 101 74.3
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 3.6e-34 149.8 174 50.6
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.4e-33 147.9 158 55.1
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 2.6e-32 143.7 101 72.3
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 2.2e-31 140.6 102 68.6
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 2.2e-31 140.6 288 32.6
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 9.2e-30 135.2 289 34.6
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 3.5e-29 133.3 124 56.5
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.0e-28 131.7 154 49.4
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 3.6e-26 123.2 128 51.6
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 4.0e-25 119.8 131 48.9
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 1.3e-23 114.8 99 61.6
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 2.2e-23 114.0 80 71.2
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 3.8e-23 113.2 237 36.7
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 3.2e-22 110.2 275 32.0
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.6e-21 107.8 146 46.6
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 2.1e-18 97.4 122 41.8
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 6.9e-17 92.4 53 73.6
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.0e-16 90.9 61 72.1
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.2e-15 87.4 55 76.4
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 8.4e-15 85.5 107 44.9
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 2.4e-14 84.0 102 44.1
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 1.2e-13 81.6 151 35.8
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 6.0e-13 79.3 72 59.7
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 1.5e-11 74.7 83 47.0
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 7.3e-11 72.4 48 68.8
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 3.6e-10 70.1 81 48.1
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 4.8e-10 69.7 73 53.4
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 6.2e-10 69.3 44 72.7
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 4.0e-09 66.6 94 42.6
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 3.4e-08 63.5 40 77.5
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 4.5e-08 63.2 91 38.5
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 4.5e-08 63.2 93 41.9


User provided reference genes

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