Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 0.0e+00 1402.5 737 100.0
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 4.6e-231 805.1 773 63.1
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 2.9e-161 573.2 392 78.1
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 1.6e-122 444.5 282 81.9
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 1.4e-102 378.3 554 45.3
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 5.3e-102 376.3 659 40.7
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 1.2e-101 375.2 696 40.2
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 1.5e-101 374.8 763 38.0
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 2.0e-101 374.4 500 46.8
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 2.2e-100 370.9 644 42.7
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 6.5e-100 369.4 644 42.9
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 4.6e-98 363.2 499 45.7
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 1.8e-97 361.3 636 42.5
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 6.7e-97 359.4 675 40.1
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 1.1e-96 358.6 683 39.5
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 3.3e-96 357.1 532 44.7
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 5.9e-93 346.3 762 38.1
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 1.0e-92 345.5 799 36.2
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 5.0e-92 343.2 408 50.5
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 1.9e-91 341.3 551 42.3
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 2.5e-88 330.9 761 36.3
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 9.7e-88 328.9 541 42.3
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 2.2e-87 327.8 702 37.0
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 2.0e-85 321.2 848 34.0
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 2.0e-85 321.2 747 37.6
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 4.5e-85 320.1 755 37.2
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 5.9e-85 319.7 592 39.9
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 5.9e-85 319.7 592 39.9
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 5.9e-85 319.7 592 39.9
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 6.5e-84 316.2 496 42.5
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 8.5e-84 315.8 541 39.9
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 1.1e-83 315.5 414 46.9
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 3.2e-83 313.9 571 39.4
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 3.2e-83 313.9 405 47.2
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 7.2e-83 312.8 405 48.4
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 1.2e-82 312.0 471 44.6
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.6e-82 311.6 695 37.1
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 4.7e-82 310.1 397 47.4
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 4.7e-82 310.1 601 38.4
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 6.1e-82 309.7 470 44.7
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 1.0e-81 308.9 402 46.8
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 1.4e-81 308.5 562 38.3
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 5.1e-81 306.6 571 39.4
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 5.1e-81 306.6 383 46.7
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 7.4e-80 302.8 340 51.5
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 7.4e-80 302.8 413 47.9
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 9.7e-80 302.4 480 42.7
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 9.7e-80 302.4 498 41.8
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 8.2e-79 299.3 285 58.6
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 8.2e-79 299.3 551 40.5
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 1.8e-78 298.1 334 52.4
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 9.1e-78 295.8 344 52.0
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 1.2e-77 295.4 406 46.1
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 1.2e-77 295.4 602 37.4
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 1.5e-77 295.0 552 39.7
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 3.5e-77 293.9 594 38.4
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 5.9e-77 293.1 394 47.2
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 1.3e-76 292.0 398 46.5
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 2.2e-76 291.2 452 42.5
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 6.5e-76 289.7 465 42.8
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 6.5e-76 289.7 488 41.4
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 2.5e-75 287.7 418 43.5
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.7e-74 284.3 296 54.7
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 4.0e-73 280.4 679 33.6
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 1.1e-72 278.9 459 41.6
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 7.4e-72 276.2 470 39.8
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 8.2e-71 272.7 675 33.3
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 1.1e-70 272.3 421 42.8
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 5.3e-70 270.0 372 43.5
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 7.0e-70 269.6 311 49.8
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 2.6e-69 267.7 564 36.0
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 3.8e-68 263.8 500 37.4
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 3.8e-68 263.8 584 34.1
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 5.0e-68 263.5 555 35.3
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 6.5e-68 263.1 414 41.1
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 6.5e-68 263.1 431 41.8
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 2.5e-67 261.2 735 32.1
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 5.5e-67 260.0 571 33.6
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 7.2e-67 259.6 583 33.8
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 1.6e-66 258.5 630 32.9
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 1.6e-66 258.5 444 40.3
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 3.6e-66 257.3 630 32.7
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 3.6e-66 257.3 375 42.7
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 3.0e-65 254.2 437 39.4
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 6.8e-65 253.1 517 34.6
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 8.8e-65 252.7 458 36.7
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 1.2e-64 252.3 678 32.3
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 1.5e-64 251.9 376 41.8
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 1.7e-63 248.4 399 40.1
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 2.2e-63 248.1 631 33.0
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 1.1e-62 245.7 259 54.1
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 2.4e-62 244.6 435 38.4
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 1.2e-61 242.3 609 32.8
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 7.7e-61 239.6 622 32.8
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 1.0e-60 239.2 413 39.7
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 1.3e-60 238.8 318 48.4
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 1.2e-56 225.7 442 36.2
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 2.8e-55 221.1 246 54.1
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 2.8e-55 221.1 252 54.0
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 3.7e-55 220.7 459 36.4
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 4.1e-54 217.2 372 38.7
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 7.0e-54 216.5 380 40.0
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 1.6e-53 215.3 610 32.0
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 3.8e-52 210.7 391 38.1
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 6.4e-47 193.4 300 43.0
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 1.4e-46 192.2 319 43.3
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 7.0e-46 189.9 227 51.1
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 2.0e-45 188.3 416 37.0
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 2.3e-44 184.9 295 38.3
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.5e-43 182.2 262 42.4
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 8.0e-42 176.4 259 42.5
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 1.3e-39 169.1 364 35.2
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 2.3e-36 158.3 378 32.0
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 6.6e-36 156.8 257 37.7
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 1.1e-35 156.0 368 32.3
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 1.1e-35 156.0 403 34.5
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 1.6e-34 152.1 365 31.8
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 2.0e-32 145.2 412 27.4
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 2.6e-32 144.8 142 58.5
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 2.7e-29 134.8 192 41.1
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 5.2e-25 120.6 208 36.1
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 2.4e-22 111.7 113 57.5
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 4.0e-17 94.4 255 32.2
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 3.8e-15 87.8 87 50.6
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 8.4e-15 86.7 184 34.2
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 4.2e-14 84.3 280 28.6
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 5.6e-11 73.9 296 28.7
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 2.0e-08 65.5 60 50.0
TAR362G0891 Trochodendron aralioides HOM05D015611 ORTHO05D005145 2.0e-08 65.5 353 23.5
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 5.8e-08 63.9 42 71.4
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 5.8e-08 63.9 71 45.1
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 1.3e-07 62.8 326 26.7
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 1.7e-07 62.4 255 28.6
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 6.4e-07 60.5 121 35.5
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 5.4e-06 57.4 271 25.5
Cpa.g.sc1876.1 Carica papaya HOM05D004311 ORTHO05D005145 9.3e-06 56.6 121 33.1
THA.LOC104798849 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 9.3e-06 56.6 349 27.5


User provided reference genes

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