Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012118 Sechium edule HOM05D005849 ORTHO05D004704 6.9e-114 414.1 221 100.0
Sed0027972 Sechium edule HOM05D005849 ORTHO05D004704 7.7e-73 277.7 221 72.4
CsaV3_6G009640 Cucumis sativus L. HOM05D005849 ORTHO05D004704 3.8e-72 275.4 237 72.2
MELO3C025957.2 Cucumis melo HOM05D005849 ORTHO05D004704 6.5e-56 221.5 183 71.6
ClCG02G009210 Citrullus lanatus HOM05D005849 ORTHO05D004704 5.7e-52 208.4 190 64.7
Duzib138G1177 Durio zibethinus HOM05D005849 ORTHO05D004704 1.8e-34 150.2 261 44.1
QL04p068477 Quercus lobata HOM05D005849 ORTHO05D004704 5.0e-32 142.1 229 46.7
Prupe.3G197400 Prunus persica HOM05D005849 ORTHO05D004704 1.5e-28 130.6 259 40.2
COL.COLO4_19617 Corchorus olitorius HOM05D005849 ORTHO05D004704 5.8e-28 128.6 272 39.7
Duzib133G0645 Durio zibethinus HOM05D005849 ORTHO05D004704 3.7e-27 125.9 268 41.0
RcHm_v2.0_Chr2g0155981 Rosa chinensis HOM05D005849 ORTHO05D004704 3.7e-27 125.9 251 43.8
FvH4_6g40610 Fragaria vesca HOM05D005849 ORTHO05D004704 7.0e-26 121.7 249 42.6
FAN02G2959 Fragaria x ananassa HOM05D005849 ORTHO05D004704 7.0e-26 121.7 249 41.8
FAN14G3262 Fragaria x ananassa HOM05D005849 ORTHO05D004704 7.0e-26 121.7 249 42.6
CiPaw.03G281900 Carya illinoinensis HOM05D005849 ORTHO05D004704 1.2e-25 120.9 235 42.6
FAN05G2424 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.2e-25 120.9 249 42.2
MD09G1126800 Malus domestica HOM05D005849 ORTHO05D004704 1.2e-25 120.9 224 44.6
Potri.014G167700 Populus trichocarpa HOM05D005849 ORTHO05D004704 2.7e-25 119.8 275 38.5
Thecc.01G196200 Theobroma cacao HOM05D005849 ORTHO05D004704 3.5e-25 119.4 136 55.9
FAN09G2506 Fragaria x ananassa HOM05D005849 ORTHO05D004704 4.6e-25 119.0 249 41.8
Lj8P136T22 Lonicera japonica HOM05D005849 ORTHO05D004704 7.8e-25 118.2 236 41.1
Haze_12628 Corylus avellana HOM05D005849 ORTHO05D004704 1.3e-24 117.5 234 43.2
Sabra14G0127500 Salix brachista HOM05D005849 ORTHO05D004704 6.6e-24 115.2 243 38.3
Cfa014225 Carpinus fangiana HOM05D005849 ORTHO05D004704 8.6e-24 114.8 233 42.9
CiPaw.04G197000 Carya illinoinensis HOM05D005849 ORTHO05D004704 2.5e-23 113.2 257 40.9
Gohir.D07G171100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 4.3e-23 112.5 227 40.1
Dinv26604 Davidia involucrata HOM05D005849 ORTHO05D004704 7.3e-23 111.7 237 37.6
Gorai.001G191400 Gossypium raimondii HOM05D005849 ORTHO05D004704 2.1e-22 110.2 226 39.8
Gohir.A07G169800 Gossypium hirsutum HOM05D005849 ORTHO05D004704 2.8e-22 109.8 228 39.9
Gorai.001G222200 Gossypium raimondii HOM05D005849 ORTHO05D004704 4.7e-22 109.0 249 38.6
Gohir.A07G192100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 6.2e-22 108.6 245 38.8
Gohir.D07G198400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 8.1e-22 108.2 251 39.4
Cc03_g07410 Coffea canephora HOM05D005849 ORTHO05D004704 1.4e-21 107.5 135 50.4
TWI36G1699 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 5.2e-21 105.5 254 38.2
Manes.12G064702 Manihot esculenta HOM05D005849 ORTHO05D004704 1.5e-20 104.0 234 40.2
Psat2g002880 Pisum sativum HOM05D005849 ORTHO05D004704 2.6e-20 103.2 221 40.3
MD17G1117100 Malus domestica HOM05D005849 ORTHO05D004704 7.5e-20 101.7 134 50.7
Manes.13G061900 Manihot esculenta HOM05D005849 ORTHO05D004704 7.5e-20 101.7 239 37.2
Medtr5g098480 Medicago truncatula HOM05D005849 ORTHO05D004704 1.7e-19 100.5 188 41.0
TWI18G0644 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 1.7e-19 100.5 261 34.9
Actinidia07866 Actinidia chinensis HOM05D005849 ORTHO05D004704 2.2e-19 100.1 188 41.5
TPR.G35904 Trifolium pratense HOM05D005849 ORTHO05D004704 4.9e-19 99.0 220 40.0
LjContig00081g0015024 Lotus japonicus HOM05D005849 ORTHO05D004704 6.4e-19 98.6 227 37.9
Cpa.g.sc136.30 Carica papaya HOM05D005849 ORTHO05D004704 8.3e-19 98.2 238 38.2
PGR083G2364 Punica granatum HOM05D005849 ORTHO05D004704 8.3e-19 98.2 242 37.6
Glyma.13G006500 Glycine max HOM05D005849 ORTHO05D004704 2.4e-18 96.7 241 34.0
TAR629G2787 Trochodendron aralioides HOM05D005849 ORTHO05D004704 5.4e-18 95.5 133 48.1
TAR629G2911 Trochodendron aralioides HOM05D005849 ORTHO05D004704 1.6e-17 94.0 208 39.9
AL3G42130 Arabidopsis lyrata HOM05D009495 ORTHO05D004704 2.1e-17 93.6 227 37.4
Ca_06483_v3 Cicer arietinum L. HOM05D005849 ORTHO05D004704 2.7e-17 93.2 133 48.9
AUR62015005 Chenopodium quinoa HOM05D005849 ORTHO05D004704 7.8e-17 91.7 235 36.6
Ciclev10018021m.g Citrus clementina HOM05D005849 ORTHO05D004704 7.8e-17 91.7 131 49.6
Rhsim06G0176600 Rhododendron simsii HOM05D005849 ORTHO05D004704 1.7e-16 90.5 218 37.6
AT2G04480 Arabidopsis thaliana HOM05D009495 ORTHO05D004704 3.9e-16 89.4 211 37.0
Solyc07g045450.1 Solanum lycopersicum HOM05D005849 ORTHO05D004704 1.1e-15 87.8 133 43.6
Sopen07g023990 Solanum pennellii HOM05D005849 ORTHO05D004704 1.1e-15 87.8 133 43.6
THA.LOC104808845 Tarenaya hassleriana HOM05D005849 ORTHO05D004704 1.1e-15 87.8 98 54.1
Lalb_Chr10g0107651 Lupinus albus HOM05D005849 ORTHO05D004704 1.9e-15 87.0 239 39.7
Nn1g03187 Nelumbo nucifera HOM05D005849 ORTHO05D004704 5.6e-15 85.5 230 36.1
EL10Ac9g22679 Beta vulgaris HOM05D005849 ORTHO05D004704 9.5e-15 84.7 257 33.9
Lsat_1_v5_gn_9_103781 Lactuca sativa HOM05D005849 ORTHO05D004704 1.2e-14 84.3 189 38.6
Psat5g104280 Pisum sativum HOM05D005849 ORTHO05D004704 1.6e-14 84.0 202 37.1
Dinv21298 Davidia involucrata HOM05D005849 ORTHO05D004704 2.1e-14 83.6 200 38.5
PSO541G2883 Papaver somniferum HOM05D005849 ORTHO05D004704 2.1e-14 83.6 236 35.6
Sc20g0004000 Simmondsia chinensis HOM05D005849 ORTHO05D004704 2.1e-14 83.6 209 38.8
Sp3g23270 Schrenkiella parvula HOM05D009495 ORTHO05D004704 2.8e-14 83.2 189 36.5
Medtr3g082780 Medicago truncatula HOM05D005849 ORTHO05D004704 3.6e-14 82.8 91 53.8
Aqoxy4G02338 Aquilegia oxysepala HOM05D005849 ORTHO05D004704 6.2e-14 82.0 235 33.2
AUR62029117 Chenopodium quinoa HOM05D005849 ORTHO05D004704 6.2e-14 82.0 198 37.4
ECA240G3450 Erigeron canadensis HOM05D005849 ORTHO05D004704 6.2e-14 82.0 134 46.3
Glyma.20G062100 Glycine max HOM05D005849 ORTHO05D004704 8.1e-14 81.6 231 35.9
Nn1g07503 Nelumbo nucifera HOM05D005849 ORTHO05D004704 1.1e-13 81.3 129 44.2
CARHR102390 Cardamine hirsuta HOM05D009495 ORTHO05D004704 1.4e-13 80.9 189 37.0
DCAR_012893 Daucus carota HOM05D005849 ORTHO05D004704 3.1e-13 79.7 132 47.0
Nitab4.5_0000006g0660 Nicotiana tabacum HOM05D005849 ORTHO05D004704 4.0e-13 79.3 240 31.7
BraA07t28463Z Brassica rapa HOM05D009495 ORTHO05D004704 5.2e-13 79.0 189 36.0
PSO675G3647 Papaver somniferum HOM05D005849 ORTHO05D004704 6.8e-13 78.6 225 34.2
AT5G35870 Arabidopsis thaliana HOM05D009495 ORTHO05D004704 1.2e-12 77.8 189 36.0
C07p10220 Brassica napus HOM05D009495 ORTHO05D004704 1.2e-12 77.8 189 36.5
VMungo0540G2501 Vigna mungo HOM05D005849 ORTHO05D004704 1.2e-12 77.8 100 51.0
Oeu064351.1 Olea europaea HOM05D005849 ORTHO05D004704 2.0e-12 77.0 130 40.8
TPR.G11064 Trifolium pratense HOM05D005849 ORTHO05D004704 2.0e-12 77.0 212 35.8
MBI19_g14891_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 3.4e-12 76.3 161 37.9
Carub.0007s3167 Capsella rubella HOM05D009495 ORTHO05D004704 4.4e-12 75.9 113 43.4
Ah.01g002540 Amaranthus hybridus HOM05D005849 ORTHO05D004704 5.8e-12 75.5 230 34.8
A07p06700 Brassica napus HOM05D009495 ORTHO05D004704 7.6e-12 75.1 189 34.9
BcaC06g35871 Brassica carinata HOM05D009495 ORTHO05D004704 1.7e-11 73.9 135 38.5
BolC7t41473H Brassica oleracea HOM05D009495 ORTHO05D004704 1.7e-11 73.9 135 38.5
AL7G44750 Arabidopsis lyrata HOM05D009495 ORTHO05D004704 2.2e-11 73.6 197 36.0
Thhalv10002998m.g Eutrema salsugineum HOM05D009495 ORTHO05D004704 2.2e-11 73.6 189 34.9
Actinidia18832 Actinidia chinensis HOM05D005849 ORTHO05D004704 3.8e-11 72.8 129 43.4
Gohir.D01G076400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 3.8e-11 72.8 116 44.0
Carub.0003s2613 Capsella rubella HOM05D009495 ORTHO05D004704 6.4e-11 72.0 212 34.0
Lj1P796T11 Lonicera japonica HOM05D005849 ORTHO05D004704 6.4e-11 72.0 133 42.1
Ciclev10009298m.g Citrus clementina HOM05D005849 ORTHO05D004704 8.4e-11 71.6 240 32.1
DCAR_019680 Daucus carota HOM05D005849 ORTHO05D004704 8.4e-11 71.6 130 42.3
Phvul.007G121090 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 1.4e-10 70.9 221 38.9
BcaB06g26787 Brassica carinata HOM05D009495 ORTHO05D004704 1.9e-10 70.5 187 33.7
Duzib213G0789 Durio zibethinus HOM05D005849 ORTHO05D004704 2.4e-10 70.1 131 42.7
Gorai.002G099600 Gossypium raimondii HOM05D005849 ORTHO05D004704 3.2e-10 69.7 231 34.2
Sp7g06260 Schrenkiella parvula HOM05D009495 ORTHO05D004704 4.1e-10 69.3 189 33.3
Peaxi162Scf00802g00130 Petunia axillaris HOM05D005849 ORTHO05D004704 5.4e-10 68.9 206 33.0
Actinidia35203 Actinidia chinensis HOM05D005849 ORTHO05D004704 1.2e-09 67.8 217 31.8
Gohir.A01G091100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 1.6e-09 67.4 230 35.2
Thhalv10005712m.g Eutrema salsugineum HOM05D009495 ORTHO05D004704 2.7e-09 66.6 203 34.0
MSTRG.12249 Avicennia marina HOM05D005849 ORTHO05D004704 3.5e-09 66.2 149 39.6
BcaB02g08048 Brassica carinata HOM05D009495 ORTHO05D004704 3.5e-09 66.2 189 32.8
C09p26070 Brassica napus HOM05D009495 ORTHO05D004704 3.5e-09 66.2 189 31.7
BolC9t55510H Brassica oleracea HOM05D009495 ORTHO05D004704 3.5e-09 66.2 189 31.7
arahy.Tifrunner.gnm1.ann1.S46AGL Arachis hypogaea HOM05D005849 ORTHO05D004704 4.6e-09 65.9 104 48.1
THA.LOC104815364 Tarenaya hassleriana HOM05D005849 ORTHO05D004704 4.6e-09 65.9 90 47.8
Sabra16G0240400 Salix brachista HOM05D005849 ORTHO05D004704 7.8e-09 65.1 133 37.6
Aa31sc203G20 Aethionema arabicum HOM05D009495 ORTHO05D004704 1.3e-08 64.3 92 42.4
CiPaw.11G203200 Carya illinoinensis HOM05D005849 ORTHO05D004704 1.3e-08 64.3 221 31.7
MBI16_g22138_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 6.6e-08 62.0 235 32.8
Actinidia09789 Actinidia chinensis HOM05D005849 ORTHO05D004704 1.1e-07 61.2 133 36.1
C04p43510 Brassica napus HOM05D009495 ORTHO05D004704 1.1e-07 61.2 196 30.6
Manes.15G060700 Manihot esculenta HOM05D005849 ORTHO05D004704 1.1e-07 61.2 229 29.3
BcaC04g21895 Brassica carinata HOM05D009495 ORTHO05D004704 3.3e-07 59.7 130 34.6
A09p20650 Brassica napus HOM05D009495 ORTHO05D004704 5.6e-07 58.9 127 36.2
BraA09t37669Z Brassica rapa HOM05D009495 ORTHO05D004704 5.6e-07 58.9 127 36.2
arahy.Tifrunner.gnm1.ann1.8Y07GA Arachis hypogaea HOM05D005849 ORTHO05D004704 7.3e-07 58.5 205 33.2
A04p10030 Brassica napus HOM05D009495 ORTHO05D004704 7.3e-07 58.5 189 30.7
BraA04t16665Z Brassica rapa HOM05D009495 ORTHO05D004704 7.3e-07 58.5 189 30.7
TWI38G0138 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 7.3e-07 58.5 223 29.6
Nn1g04368 Nelumbo nucifera HOM05D005849 ORTHO05D004704 9.6e-07 58.2 85 43.5
Nitab4.5_0004125g0020 Nicotiana tabacum HOM05D005849 ORTHO05D004704 1.2e-06 57.8 153 32.7
BcaC02g09504 Brassica carinata HOM05D009495 ORTHO05D004704 1.6e-06 57.4 196 30.1
CANSAT11G2057 Cannabis sativa HOM05D005849 ORTHO05D004704 1.6e-06 57.4 237 31.2
Lj6g0007370 Lotus japonicus HOM05D005849 ORTHO05D004704 1.6e-06 57.4 86 44.2
CARHR216740 Cardamine hirsuta HOM05D009495 ORTHO05D004704 2.8e-06 56.6 223 33.2
Potri.001G367100 Populus trichocarpa HOM05D005849 ORTHO05D004704 2.8e-06 56.6 129 35.7
Phvul.006G056700 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 3.6e-06 56.2 101 38.6
QL08p004345 Quercus lobata HOM05D005849 ORTHO05D004704 3.6e-06 56.2 143 37.1
QL11p054311 Quercus lobata HOM05D005849 ORTHO05D004704 3.6e-06 56.2 143 37.1
Lj8P178T38 Lonicera japonica HOM05D005849 ORTHO05D004704 4.7e-06 55.8 113 36.3
Thecc.07G014700 Theobroma cacao HOM05D005849 ORTHO05D004704 4.7e-06 55.8 231 30.3
Nitab4.5_0001701g0180 Nicotiana tabacum HOM05D005849 ORTHO05D004704 6.2e-06 55.5 156 31.4
Prupe.4G242400 Prunus persica HOM05D005849 ORTHO05D004704 8.1e-06 55.1 47 63.8


User provided reference genes

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