Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012071 Sechium edule HOM05D000265 ORTHO05D018484 1.0e-82 310.1 162 100.0
CsaV3_1G043720 Cucumis sativus L. HOM05D000265 ORTHO05D018484 3.7e-32 142.1 138 57.2
MELO3C015075.2 Cucumis melo HOM05D000265 ORTHO05D018484 5.9e-30 134.8 138 55.1
Sed0003329 Sechium edule HOM05D000265 ORTHO05D000161 7.5e-17 91.3 126 41.3
CsaV3_1G043740 Cucumis sativus L. HOM05D000265 ORTHO05D000161 9.8e-17 90.9 130 41.5
MELO3C015073.2 Cucumis melo HOM05D000265 ORTHO05D000161 2.2e-16 89.7 130 40.8
ClCG03G012110 Citrullus lanatus HOM05D000265 ORTHO05D000161 8.3e-16 87.8 149 36.9
ClCG03G012080 Citrullus lanatus HOM05D000265 ORTHO05D018484 2.7e-11 72.8 73 58.9
MELO3C015071.2 Cucumis melo HOM05D000265 ORTHO05D000161 2.7e-11 72.8 143 37.1
ClCG03G012130 Citrullus lanatus HOM05D000265 ORTHO05D000161 4.7e-11 72.0 105 41.9
CsaV3_1G043750 Cucumis sativus L. HOM05D000265 ORTHO05D000161 6.1e-11 71.6 122 39.3
Dinv17103 Davidia involucrata HOM05D000265 ORTHO05D000161 6.1e-11 71.6 141 36.9
Potri.009G017900 Populus trichocarpa HOM05D000265 ORTHO05D000161 1.4e-10 70.5 138 34.8
Manes.04G060000 Manihot esculenta HOM05D000265 ORTHO05D000161 4.0e-10 68.9 142 32.4
GSVIVG01037569001 Vitis vinifera HOM05D000265 ORTHO05D000161 5.2e-10 68.6 165 30.3
Dinv17099 Davidia involucrata HOM05D000265 ORTHO05D000161 8.8e-10 67.8 141 35.5
CiPaw.13G130300 Carya illinoinensis HOM05D000265 ORTHO05D000161 1.2e-09 67.4 110 38.2
Dinv17102 Davidia involucrata HOM05D000265 ORTHO05D000161 1.2e-09 67.4 138 36.2
Eucgr.J00563 Eucalyptus grandis HOM05D000265 ORTHO05D000161 1.2e-09 67.4 110 32.7
Lj3g0017294 Lotus japonicus HOM05D000265 ORTHO05D000161 2.0e-09 66.6 140 30.7
CSS0015822 Camellia sinensis var. sinensis HOM05D000265 ORTHO05D000161 2.6e-09 66.2 102 37.3
Nitab4.5_0000158g0080 Nicotiana tabacum HOM05D000265 ORTHO05D000161 2.6e-09 66.2 147 34.0
CiPaw.13G130600 Carya illinoinensis HOM05D000265 ORTHO05D000161 3.4e-09 65.9 131 34.4
Ciclev10028411m.g Citrus clementina HOM05D000265 ORTHO05D000161 3.4e-09 65.9 145 30.3
QL01p019890 Quercus lobata HOM05D000265 ORTHO05D000161 4.4e-09 65.5 141 35.5
RcHm_v2.0_Chr5g0048411 Rosa chinensis HOM05D000265 ORTHO05D000161 5.7e-09 65.1 138 32.6
COL.COLO4_37848 Corchorus olitorius HOM05D000265 ORTHO05D000161 7.5e-09 64.7 117 35.9
Dinv09384 Davidia involucrata HOM05D000265 ORTHO05D000161 9.8e-09 64.3 103 35.9
Lj1A266T15 Lonicera japonica HOM05D000265 ORTHO05D000161 9.8e-09 64.3 134 32.1
Thecc.09G272800 Theobroma cacao HOM05D000265 ORTHO05D000161 9.8e-09 64.3 139 36.7
TPR.G4153 Trifolium pratense HOM05D000265 ORTHO05D000161 9.8e-09 64.3 157 29.9
CiPaw.10G017800 Carya illinoinensis HOM05D000265 ORTHO05D000161 1.3e-08 63.9 147 33.3
TAR636G3529 Trochodendron aralioides HOM05D000265 ORTHO05D000161 1.3e-08 63.9 141 30.5
Atru.chr3.3118 Acer truncatum HOM05D000265 ORTHO05D000161 1.7e-08 63.5 133 34.6
arahy.Tifrunner.gnm1.ann1.TP76VH Arachis hypogaea HOM05D000265 ORTHO05D018484 1.7e-08 63.5 102 34.3
Dinv31761 Davidia involucrata HOM05D000265 ORTHO05D000161 2.2e-08 63.2 103 35.9
Glyma.12G188500 Glycine max HOM05D000265 ORTHO05D000161 2.2e-08 63.2 141 31.2
Medtr2g087288 Medicago truncatula HOM05D000265 ORTHO05D000161 2.2e-08 63.2 140 30.0
CiPaw.13G130200 Carya illinoinensis HOM05D000265 ORTHO05D000161 2.8e-08 62.8 102 38.2
Sabra16G0126800 Salix brachista HOM05D000265 ORTHO05D000161 2.8e-08 62.8 141 29.8
Ah.12g059200 Amaranthus hybridus HOM05D000265 ORTHO05D000161 3.7e-08 62.4 102 36.3
Ciclev10029898m.g Citrus clementina HOM05D000265 ORTHO05D000161 3.7e-08 62.4 145 31.0
Dinv17101 Davidia involucrata HOM05D000265 ORTHO05D000161 3.7e-08 62.4 115 35.7
Duzib150G0137 Durio zibethinus HOM05D000265 ORTHO05D000161 3.7e-08 62.4 113 37.2
Eucgr.L01785 Eucalyptus grandis HOM05D000265 ORTHO05D000161 4.9e-08 62.0 105 34.3
Nn2g14312 Nelumbo nucifera HOM05D000265 ORTHO05D000161 4.9e-08 62.0 120 30.8
Thecc.09G272900 Theobroma cacao HOM05D000265 ORTHO05D000161 4.9e-08 62.0 142 33.1
Ciclev10013861m.g Citrus clementina HOM05D000265 ORTHO05D000161 6.3e-08 61.6 143 30.8
arahy.Tifrunner.gnm1.ann1.48792Q Arachis hypogaea HOM05D000265 ORTHO05D000161 8.3e-08 61.2 136 31.6
AUR62020019 Chenopodium quinoa HOM05D000265 ORTHO05D000161 8.3e-08 61.2 105 34.3
CiPaw.09G021000 Carya illinoinensis HOM05D000265 ORTHO05D000161 1.1e-07 60.8 150 28.7
CiPaw.13G129500 Carya illinoinensis HOM05D000265 ORTHO05D000161 1.1e-07 60.8 120 33.3
QL01p019837 Quercus lobata HOM05D000265 ORTHO05D000161 1.1e-07 60.8 140 34.3
Sc12g0004890 Simmondsia chinensis HOM05D000265 ORTHO05D000161 1.1e-07 60.8 125 35.2
Haze_23302 Corylus avellana HOM05D000265 ORTHO05D000161 1.4e-07 60.5 106 34.0
Nitab4.5_0010113g0020 Nicotiana tabacum HOM05D000265 ORTHO05D000161 1.4e-07 60.5 139 33.8
Sabra16G0126500 Salix brachista HOM05D000265 ORTHO05D000161 1.4e-07 60.5 105 38.1
AUR62020232 Chenopodium quinoa HOM05D000265 ORTHO05D000161 1.8e-07 60.1 137 30.7
Eucgr.J00567 Eucalyptus grandis HOM05D000265 ORTHO05D000161 1.8e-07 60.1 104 32.7
RcHm_v2.0_Chr5g0048321 Rosa chinensis HOM05D000265 ORTHO05D000161 1.8e-07 60.1 138 32.6
Sabra16G0126700 Salix brachista HOM05D000265 ORTHO05D000161 1.8e-07 60.1 108 36.1
AUR62001753 Chenopodium quinoa HOM05D000265 ORTHO05D000161 2.4e-07 59.7 105 35.2
Haze_20182 Corylus avellana HOM05D000265 ORTHO05D000161 2.4e-07 59.7 143 30.1
Dinv17104 Davidia involucrata HOM05D000265 ORTHO05D000161 2.4e-07 59.7 120 33.3
Sabra16G0126600 Salix brachista HOM05D000265 ORTHO05D000161 2.4e-07 59.7 104 35.6
VMungo1080G1054 Vigna mungo HOM05D000265 ORTHO05D000161 2.4e-07 59.7 103 31.1
Ah.08g221950 Amaranthus hybridus HOM05D000265 ORTHO05D000161 3.1e-07 59.3 132 33.3
MD03G1155500 Malus domestica HOM05D000265 ORTHO05D000161 3.1e-07 59.3 141 30.5
TPR.G4221 Trifolium pratense HOM05D000265 ORTHO05D000161 3.1e-07 59.3 101 33.7
TAR623G0429 Trochodendron aralioides HOM05D000265 ORTHO05D000161 3.1e-07 59.3 107 33.6
Actinidia03212 Actinidia chinensis HOM05D000265 ORTHO05D000161 4.1e-07 58.9 145 31.0
AUR62030743 Chenopodium quinoa HOM05D000265 ORTHO05D000161 4.1e-07 58.9 120 29.2
FAN14G4701 Fragaria x ananassa HOM05D000265 ORTHO05D000161 4.1e-07 58.9 138 31.2
Oeu045045.1 Olea europaea HOM05D000265 ORTHO05D000161 4.1e-07 58.9 100 35.0
Rhsim03G0064400 Rhododendron simsii HOM05D000265 ORTHO05D000161 4.1e-07 58.9 109 32.1
arahy.Tifrunner.gnm1.ann1.CQQI9I Arachis hypogaea HOM05D000265 ORTHO05D000161 5.4e-07 58.5 133 31.6
Cfa020031 Carpinus fangiana HOM05D000265 ORTHO05D000161 5.4e-07 58.5 143 29.4
Gohir.A09G099000 Gossypium hirsutum HOM05D000265 ORTHO05D000161 5.4e-07 58.5 113 35.4
Manes.04G059800 Manihot esculenta HOM05D000265 ORTHO05D000161 5.4e-07 58.5 143 28.0
Rhsim03G0066100 Rhododendron simsii HOM05D000265 ORTHO05D000161 5.4e-07 58.5 109 30.3
RcHm_v2.0_Chr5g0048481 Rosa chinensis HOM05D000265 ORTHO05D000161 5.4e-07 58.5 142 34.5
TAR623G1604 Trochodendron aralioides HOM05D000265 ORTHO05D000161 5.4e-07 58.5 142 30.3
CiPaw.13G129800 Carya illinoinensis HOM05D000265 ORTHO05D000161 7.0e-07 58.2 102 36.3
CiPaw.13G130000 Carya illinoinensis HOM05D000265 ORTHO05D000161 7.0e-07 58.2 102 36.3
CDE08G0521 Ceratophyllum demersum HOM05D000265 ORTHO05D000161 7.0e-07 58.2 146 30.8
Ciclev10030132m.g Citrus clementina HOM05D000265 ORTHO05D000161 7.0e-07 58.2 141 34.8
Dinv08148 Davidia involucrata HOM05D000265 ORTHO05D000161 7.0e-07 58.2 101 34.7
Gorai.006G115400 Gossypium raimondii HOM05D000265 ORTHO05D000161 7.0e-07 58.2 113 35.4
RcHm_v2.0_Chr5g0048471 Rosa chinensis HOM05D000265 ORTHO05D000161 7.0e-07 58.2 145 31.7
Atru.chr3.3123 Acer truncatum HOM05D000265 ORTHO05D000161 9.2e-07 57.8 105 34.3
CiPaw.13G130500 Carya illinoinensis HOM05D000265 ORTHO05D000161 9.2e-07 57.8 132 31.8
FvH4_6g51850 Fragaria vesca HOM05D000265 ORTHO05D000161 9.2e-07 57.8 138 31.2
Gohir.D09G098400 Gossypium hirsutum HOM05D000265 ORTHO05D000161 9.2e-07 57.8 113 35.4
Lj1A267G32 Lonicera japonica HOM05D000265 ORTHO05D000161 9.2e-07 57.8 110 33.6
Oeu051457.1 Olea europaea HOM05D000265 ORTHO05D000161 9.2e-07 57.8 104 34.6
CSS0013493 Camellia sinensis var. sinensis HOM05D000265 ORTHO05D000161 1.2e-06 57.4 143 30.1
QL01p022857 Quercus lobata HOM05D000265 ORTHO05D000161 1.2e-06 57.4 107 31.8
Solyc11g068970.2 Solanum lycopersicum HOM05D000265 ORTHO05D000161 1.2e-06 57.4 136 28.7
QL07p036668 Quercus lobata HOM05D000265 ORTHO05D000161 1.6e-06 57.0 142 26.8
Sopen11g027680 Solanum pennellii HOM05D000265 ORTHO05D000161 1.6e-06 57.0 136 28.7
COL.COLO4_37847 Corchorus olitorius HOM05D000265 ORTHO05D000161 2.0e-06 56.6 143 31.5
Phvul.005G119700 Phaseolus vulgaris HOM05D000265 ORTHO05D000161 2.0e-06 56.6 101 30.7
Manes.09G045500 Manihot esculenta HOM05D000265 ORTHO05D000161 2.7e-06 56.2 139 27.3
Rhsim03G0064300 Rhododendron simsii HOM05D000265 ORTHO05D000161 2.7e-06 56.2 109 31.2
AUR62036381 Chenopodium quinoa HOM05D000265 ORTHO05D000161 3.5e-06 55.8 120 29.2
CsaV3_1G043760 Cucumis sativus L. HOM05D000265 ORTHO05D000161 3.5e-06 55.8 120 30.8
FvH4_3g26490 Fragaria vesca HOM05D000265 ORTHO05D000161 3.5e-06 55.8 137 31.4
FvH4_3g26520 Fragaria vesca HOM05D000265 ORTHO05D000161 3.5e-06 55.8 139 29.5
FAN09G1121 Fragaria x ananassa HOM05D000265 ORTHO05D000161 3.5e-06 55.8 139 29.5
FAN11G3113 Fragaria x ananassa HOM05D000265 ORTHO05D000161 3.5e-06 55.8 137 31.4
Lj1C1053G6 Lonicera japonica HOM05D000265 ORTHO05D000161 3.5e-06 55.8 116 29.3
Potri.001G217050 Populus trichocarpa HOM05D000265 ORTHO05D000161 3.5e-06 55.8 104 34.6
ClCG03G012150 Citrullus lanatus HOM05D000265 ORTHO05D000161 4.5e-06 55.5 121 30.6
FvH4_6g51860 Fragaria vesca HOM05D000265 ORTHO05D000161 4.5e-06 55.5 137 31.4
FAN11G2863 Fragaria x ananassa HOM05D000265 ORTHO05D000161 4.5e-06 55.5 137 29.9
Glyma.12G188400 Glycine max HOM05D000265 ORTHO05D000161 4.5e-06 55.5 103 29.1
PSO384G1874 Papaver somniferum HOM05D000265 ORTHO05D000161 4.5e-06 55.5 144 28.5
Dinv12339 Davidia involucrata HOM05D000265 ORTHO05D000161 5.9e-06 55.1 147 29.3
PSO384G3549 Papaver somniferum HOM05D000265 ORTHO05D000161 5.9e-06 55.1 133 27.1
Potri.001G217200 Populus trichocarpa HOM05D000265 ORTHO05D000161 5.9e-06 55.1 102 37.3
RcHm_v2.0_Chr5g0048461 Rosa chinensis HOM05D000265 ORTHO05D000161 5.9e-06 55.1 136 30.1
Atru.chr3.3121 Acer truncatum HOM05D000265 ORTHO05D000161 7.7e-06 54.7 104 33.7
EL10Ac3g05601 Beta vulgaris HOM05D000265 ORTHO05D000161 7.7e-06 54.7 146 27.4
EL10Ac5g12967 Beta vulgaris HOM05D000265 ORTHO05D000161 7.7e-06 54.7 123 29.3
Cfa009931 Carpinus fangiana HOM05D000265 ORTHO05D000161 7.7e-06 54.7 110 30.0
Hma1.2p1_0079F.1_g041810 Hydrangea macrophylla HOM05D000265 ORTHO05D000161 7.7e-06 54.7 145 30.3
Medtr2g087285 Medicago truncatula HOM05D000265 ORTHO05D000161 7.7e-06 54.7 101 31.7
Potri.006G203100 Populus trichocarpa HOM05D000265 ORTHO05D000161 7.7e-06 54.7 142 28.9


User provided reference genes

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