Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 2.4e-120 436.0 310 100.0
MELO3C005997.2 Cucumis melo HOM05D004242 ORTHO05D004349 1.3e-49 201.1 185 63.8
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 9.2e-48 194.9 317 51.1
CsaV3_3G007810 Cucumis sativus L. HOM05D030996 ORTHO05D004349 3.1e-43 179.9 184 58.7
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 7.1e-24 115.5 171 45.6
Sed0027906 Sechium edule HOM05D030996 ORTHO05D004349 1.6e-23 114.4 313 35.5
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 3.5e-23 113.2 170 44.7
CsaV3_3G007820 Cucumis sativus L. HOM05D030996 ORTHO05D004349 5.1e-22 109.4 314 34.7
MELO3C005998.2 Cucumis melo HOM05D030996 ORTHO05D004349 6.6e-22 109.0 169 46.2
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 4.7e-20 102.8 171 44.4
CsaV3_3G007790 Cucumis sativus L. HOM05D004242 ORTHO05D004349 1.9e-16 90.9 148 42.6
ClCG05G000580 Citrullus lanatus HOM05D004242 ORTHO05D004349 2.4e-16 90.5 150 41.3
Sed0013414 Sechium edule HOM05D004242 ORTHO05D004349 2.4e-16 90.5 138 44.9
MELO3C005995.2 Cucumis melo HOM05D004242 ORTHO05D004349 4.6e-15 86.3 149 40.9
Sed0025990 Sechium edule HOM05D004242 ORTHO05D004349 6.0e-15 85.9 138 43.5
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 2.8e-12 77.0 203 32.5
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 8.1e-12 75.5 188 37.2
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 1.1e-11 75.1 169 34.3
ClCG05G000590 Citrullus lanatus HOM05D004242 ORTHO05D004349 1.4e-11 74.7 330 28.2
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.4e-11 74.7 210 33.8
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 5.3e-11 72.8 216 33.8
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 6.9e-11 72.4 220 31.8
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 9.0e-11 72.0 231 30.7
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 9.0e-11 72.0 199 29.6
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 9.0e-11 72.0 199 29.6
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 9.0e-11 72.0 205 33.2
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 1.2e-10 71.6 192 31.8
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.2e-10 71.6 210 32.9
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 1.2e-10 71.6 210 32.9
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 1.2e-10 71.6 142 38.7
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 1.5e-10 71.2 215 33.5
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 1.5e-10 71.2 188 32.4
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 2.0e-10 70.9 206 31.1
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 2.6e-10 70.5 202 32.7
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 2.6e-10 70.5 194 30.4
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 3.4e-10 70.1 223 30.9
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.4e-10 70.1 223 30.9
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.4e-10 70.1 223 30.9
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 3.4e-10 70.1 189 32.8
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 3.4e-10 70.1 209 30.1
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 7.6e-10 68.9 191 31.4
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 7.6e-10 68.9 142 34.5
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 9.9e-10 68.6 206 30.6
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 1.3e-09 68.2 183 32.8
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 1.3e-09 68.2 198 30.3
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 1.3e-09 68.2 119 42.0
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.9e-09 67.0 232 31.5
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 3.8e-09 66.6 184 34.2
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 4.9e-09 66.2 208 29.8
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 4.9e-09 66.2 204 30.9
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 4.9e-09 66.2 191 31.9
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 8.4e-09 65.5 193 31.1
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 8.4e-09 65.5 193 31.1
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 8.4e-09 65.5 168 32.1
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 8.4e-09 65.5 211 31.8
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 8.4e-09 65.5 227 29.5
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 1.1e-08 65.1 146 34.9
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 1.4e-08 64.7 215 29.3
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 2.4e-08 63.9 175 30.3
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 2.4e-08 63.9 190 32.1
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 2.4e-08 63.9 176 30.7
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 3.2e-08 63.5 192 31.2
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 3.2e-08 63.5 138 35.5
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 3.2e-08 63.5 185 30.3
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 4.2e-08 63.2 199 31.7
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 5.4e-08 62.8 210 29.5
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 9.3e-08 62.0 174 29.3
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 9.3e-08 62.0 151 36.4
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 9.3e-08 62.0 79 40.5
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 9.3e-08 62.0 232 27.6
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 9.3e-08 62.0 212 29.7
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 9.3e-08 62.0 100 40.0
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 9.3e-08 62.0 158 33.5
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 1.2e-07 61.6 188 33.0
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.6e-07 61.2 232 28.9
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 1.6e-07 61.2 118 36.4
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 2.1e-07 60.8 187 36.4
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 2.1e-07 60.8 184 31.5
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 2.1e-07 60.8 186 31.2
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 2.7e-07 60.5 149 34.2
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 2.7e-07 60.5 212 29.2
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 2.7e-07 60.5 56 46.4
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.5e-07 60.1 231 28.1
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 3.5e-07 60.1 100 38.0
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 3.5e-07 60.1 119 37.8
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 7.9e-07 58.9 38 65.8
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 7.9e-07 58.9 207 30.4
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 7.9e-07 58.9 229 28.8
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 1.0e-06 58.5 205 28.3
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 1.0e-06 58.5 192 28.6
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 1.0e-06 58.5 190 30.0
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 1.3e-06 58.2 166 30.7
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.3e-06 58.2 178 32.6
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 1.3e-06 58.2 183 30.1
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 1.8e-06 57.8 199 29.6
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 1.8e-06 57.8 115 33.9
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 2.3e-06 57.4 187 32.6
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 2.3e-06 57.4 166 30.1
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 2.3e-06 57.4 177 29.9
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 3.0e-06 57.0 136 32.4
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 3.0e-06 57.0 132 33.3
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 5.1e-06 56.2 201 27.9
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 5.1e-06 56.2 176 31.2
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 6.7e-06 55.8 97 37.1
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 8.7e-06 55.5 174 31.6
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 8.7e-06 55.5 174 31.6
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 8.7e-06 55.5 179 30.2


User provided reference genes

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