Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 0.0e+00 1641.7 811 100.0
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 0.0e+00 1469.9 812 88.3
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 0.0e+00 1467.6 811 88.5
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 0.0e+00 1441.0 811 86.4
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 0.0e+00 1400.6 811 85.1
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1137.1 816 68.5
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1130.9 816 68.5
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 0.0e+00 1117.8 821 66.7
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 0.0e+00 1116.7 811 67.0
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 0.0e+00 1111.7 816 67.8
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 0.0e+00 1109.7 815 67.0
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 0.0e+00 1108.2 817 66.6
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 0.0e+00 1106.7 812 66.6
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 0.0e+00 1102.8 817 66.7
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 0.0e+00 1101.7 817 66.6
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 0.0e+00 1090.9 817 65.7
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 0.0e+00 1090.5 815 65.6
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 0.0e+00 1085.1 817 65.4
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 0.0e+00 1081.2 811 65.1
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 0.0e+00 1079.7 822 65.1
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 0.0e+00 1078.9 819 65.9
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 0.0e+00 1078.2 873 62.0
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 0.0e+00 1077.8 816 64.3
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 7.9e-309 1063.5 817 64.5
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 1.4e-305 1052.7 822 64.6
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 6.9e-305 1050.4 818 63.9
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 1.2e-304 1049.7 818 63.9
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 3.4e-304 1048.1 819 64.7
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 7.7e-304 1047.0 813 63.3
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 1.7e-303 1045.8 815 64.5
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 3.0e-300 1035.0 816 62.5
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 1.5e-299 1032.7 814 61.8
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 2.6e-299 1031.9 818 62.6
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.2e-298 1028.9 811 63.9
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 1.8e-297 1025.8 816 63.5
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 4.1e-297 1024.6 812 63.4
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.2e-295 1018.8 817 63.3
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 8.5e-295 1016.9 853 60.5
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 4.2e-294 1014.6 815 62.9
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 2.3e-292 1008.8 814 61.9
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 3.9e-292 1008.1 786 63.4
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 2.0e-288 995.7 810 60.9
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 1.7e-287 992.6 811 60.2
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 1.7e-287 992.6 810 60.7
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 3.8e-287 991.5 842 60.9
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 5.0e-287 991.1 879 58.7
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 1.6e-285 986.1 813 59.8
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 4.0e-284 981.5 814 60.1
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 4.0e-284 981.5 813 60.5
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 8.8e-284 980.3 820 59.9
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 8.8e-284 980.3 814 60.1
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 1.2e-283 979.9 809 59.8
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 2.6e-283 978.8 814 60.2
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 3.3e-283 978.4 818 59.4
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 1.8e-281 972.6 809 60.2
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 7.0e-281 970.7 819 60.3
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 1.3e-279 966.5 811 59.3
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 2.9e-279 965.3 819 59.1
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 3.8e-279 964.9 810 58.9
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 1.5e-278 963.0 825 59.5
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 2.5e-278 962.2 810 59.3
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 5.5e-278 961.1 818 58.8
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 5.5e-278 961.1 817 59.1
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 1.2e-277 959.9 834 61.3
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 1.2e-277 959.9 807 59.2
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 3.6e-277 958.4 814 58.8
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 1.0e-276 956.8 818 58.4
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 6.8e-276 954.1 817 58.6
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 1.5e-275 953.0 809 59.3
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 5.7e-275 951.0 817 59.4
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 7.5e-275 950.7 817 58.8
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 9.8e-275 950.3 819 58.6
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 3.7e-274 948.3 819 58.5
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 3.7e-274 948.3 819 58.5
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 1.4e-273 946.4 825 58.2
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 1.8e-273 946.0 820 57.9
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 9.1e-273 943.7 826 58.4
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 1.2e-272 943.3 820 59.0
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 1.0e-271 940.3 812 58.1
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 2.5e-270 935.6 821 57.6
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 5.5e-270 934.5 816 59.6
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 1.2e-269 933.3 816 59.4
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 2.2e-266 922.5 809 57.5
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 4.5e-264 914.8 828 56.5
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 3.6e-253 878.6 818 55.4
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 3.1e-252 875.5 809 55.5
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.5e-251 873.2 813 55.2
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 3.7e-250 868.6 806 54.0
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 1.5e-243 846.7 827 53.7
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 5.8e-243 844.7 583 70.0
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 7.1e-241 837.8 626 62.9
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 1.2e-237 827.0 816 52.7
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 2.2e-234 816.2 813 51.7
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 7.1e-233 811.2 812 52.5
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 4.6e-232 808.5 750 57.1
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 3.9e-231 805.4 820 50.4
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 2.1e-229 799.7 817 50.3
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 1.2e-216 757.3 888 46.8
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 1.8e-215 753.4 571 64.1
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 3.1e-204 716.1 817 46.9
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 3.4e-187 659.4 819 45.4
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 8.5e-186 654.8 817 44.9
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 2.6e-182 643.3 825 43.9
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 4.1e-180 636.0 849 44.3
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 7.0e-180 635.2 461 66.6
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 6.1e-168 595.5 821 43.0
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 3.8e-154 549.7 843 37.6
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 4.2e-153 546.2 818 41.1
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 7.8e-147 525.4 478 55.9
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 1.0e-146 525.0 677 42.8
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 6.1e-144 515.8 815 40.7
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 4.4e-142 509.6 590 49.0
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 9.2e-140 501.9 830 38.0
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 2.0e-134 484.2 847 35.2
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 4.3e-129 466.5 819 37.9
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 1.1e-127 461.8 338 66.9
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 7.6e-118 429.1 834 33.9
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 2.6e-94 350.9 397 48.6
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 1.6e-91 341.7 673 32.1
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.5e-81 308.5 369 46.9
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 1.5e-62 245.4 956 25.7
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 2.0e-62 245.0 297 47.1
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 2.2e-61 241.5 272 50.0
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 3.2e-60 237.7 272 49.6
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 2.0e-57 228.4 153 70.6
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 4.5e-54 217.2 195 57.9
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 1.8e-50 205.3 205 53.7
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 4.1e-47 194.1 845 23.7
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 7.7e-46 189.9 164 57.9
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 3.6e-43 181.0 630 27.5
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 5.2e-34 150.6 108 64.8
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 3.7e-32 144.4 139 56.1
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 4.0e-26 124.4 131 50.4
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 1.2e-19 102.8 97 54.6
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 4.1e-15 87.8 64 65.6
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 9.2e-15 86.7 63 66.7
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 2.7e-14 85.1 63 63.5
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 8.6e-13 80.1 108 43.5
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 3.3e-12 78.2 108 42.6
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 4.7e-11 74.3 96 44.8
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 6.2e-11 73.9 79 46.8
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 1.3e-08 66.2 45 62.2
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 1.3e-08 66.2 48 62.5
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 1.7e-08 65.9 45 62.2
CARHR240490 Cardamine hirsuta HOM05D004893 ORTHO05D006320 9.2e-07 60.1 78 38.5
Lsat_1_v5_gn_4_117360 Lactuca sativa HOM05D004893 ORTHO05D006320 3.5e-06 58.2 82 45.1


User provided reference genes

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