Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 3.5e-214 748.0 381 100.0
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 1.8e-178 629.4 335 92.2
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 2.2e-176 622.5 335 91.9
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 8.3e-168 594.0 313 93.3
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 5.3e-154 548.1 330 78.2
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 1.3e-152 543.5 330 78.5
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 1.7e-152 543.1 330 79.1
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 2.9e-152 542.3 331 77.0
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 3.8e-152 542.0 331 79.2
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 4.9e-152 541.6 330 77.6
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 6.4e-152 541.2 331 77.9
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 6.4e-152 541.2 330 77.3
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 6.4e-152 541.2 331 77.6
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 6.4e-152 541.2 331 77.6
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 3.2e-151 538.9 330 76.7
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 9.3e-151 537.3 328 76.8
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 9.3e-151 537.3 326 77.6
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 9.3e-151 537.3 326 77.3
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 1.2e-150 537.0 331 75.8
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 1.6e-150 536.6 329 76.3
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 1.6e-150 536.6 335 76.4
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 2.7e-150 535.8 330 78.5
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 2.3e-149 532.7 330 76.7
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 3.0e-149 532.3 330 76.4
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 3.0e-149 532.3 329 75.4
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 5.1e-149 531.6 331 76.7
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 5.1e-149 531.6 331 76.7
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 6.6e-149 531.2 331 76.4
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 6.6e-149 531.2 331 76.4
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 6.6e-149 531.2 330 76.7
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 1.9e-148 529.6 329 75.1
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 2.5e-148 529.3 330 75.2
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 4.3e-148 528.5 331 76.4
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 7.3e-148 527.7 330 75.2
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 7.3e-148 527.7 329 76.3
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 9.6e-148 527.3 327 76.1
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 9.6e-148 527.3 330 75.5
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 9.6e-148 527.3 329 76.0
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 1.3e-147 526.9 331 75.8
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 1.6e-147 526.6 330 74.5
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 2.1e-147 526.2 327 76.1
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 2.1e-147 526.2 333 74.8
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 2.8e-147 525.8 331 74.9
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 2.8e-147 525.8 331 74.9
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 3.6e-147 525.4 331 76.4
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 3.6e-147 525.4 330 75.5
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 6.2e-147 524.6 327 75.8
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 6.2e-147 524.6 330 75.2
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 1.1e-146 523.9 330 75.2
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 4.0e-146 521.9 331 75.2
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 6.9e-146 521.2 329 74.5
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 6.9e-146 521.2 330 74.8
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 9.0e-146 520.8 331 74.6
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 9.0e-146 520.8 330 74.8
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 9.0e-146 520.8 330 73.0
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 2.0e-145 519.6 329 75.1
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 2.6e-145 519.2 325 75.7
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 3.4e-145 518.8 330 76.7
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 4.5e-145 518.5 325 75.1
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 5.8e-145 518.1 327 74.3
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 7.6e-145 517.7 326 76.1
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 1.3e-144 516.9 326 75.8
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 1.7e-144 516.5 331 74.0
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 1.7e-144 516.5 344 72.4
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 2.2e-144 516.2 330 72.1
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 3.8e-144 515.4 330 73.6
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 4.9e-144 515.0 326 73.9
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 4.9e-144 515.0 331 71.9
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 4.9e-144 515.0 330 73.0
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 1.1e-143 513.8 333 71.2
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 1.4e-143 513.5 330 73.6
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 7.1e-143 511.1 328 75.3
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 2.1e-142 509.6 329 74.2
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 7.9e-142 507.7 333 73.0
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 1.0e-141 507.3 330 74.5
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 3.9e-141 505.4 332 72.0
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 5.1e-141 505.0 330 73.0
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 6.7e-141 504.6 331 69.8
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 8.7e-141 504.2 332 73.8
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 2.5e-140 502.7 329 72.9
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 1.6e-139 500.0 331 72.5
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 3.7e-139 498.8 330 71.5
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 3.7e-139 498.8 330 70.9
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 1.8e-138 496.5 402 62.2
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 2.0e-137 493.0 326 70.6
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 7.6e-137 491.1 361 67.6
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 9.9e-137 490.7 361 67.9
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 1.3e-136 490.3 329 71.7
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 3.9e-133 478.8 317 71.9
Cpa.g.sc42.29 Carica papaya HOM05D004164 ORTHO05D004891 6.7e-133 478.0 348 67.8
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 9.6e-132 474.2 332 69.3
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 1.8e-130 469.9 330 67.3
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 9.7e-124 447.6 329 65.7
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 9.0e-122 441.0 330 63.6
FvH4_5g07040 Fragaria vesca HOM05D004164 ORTHO05D004891 4.3e-116 422.2 285 70.2
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 9.1e-114 414.5 331 61.6
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 1.5e-113 413.7 330 63.3
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 1.9e-111 406.8 355 58.9
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 4.2e-111 405.6 344 61.6
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 2.1e-110 403.3 270 70.0
MBI02_g02171_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 3.6e-110 402.5 284 69.0
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 1.8e-109 400.2 327 58.7
AagrBONN_evm.TU.Sc2ySwM_228.2787 Anthoceros agrestis HOM05D004164 ORTHO05D004891 1.3e-107 394.0 329 59.9
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 4.7e-102 375.6 330 57.0
Mapoly0043s0005 Marchantia polymorpha HOM05D004164 ORTHO05D004891 6.1e-102 375.2 339 56.6
Nn3g21861 Nelumbo nucifera HOM05D004164 ORTHO05D004891 2.0e-100 370.2 330 56.7
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 7.4e-100 368.2 225 75.6
Nn4g25427 Nelumbo nucifera HOM05D004164 ORTHO05D004891 1.6e-97 360.5 332 53.9
PSO063G3797 Papaver somniferum HOM05D004164 ORTHO05D004891 7.2e-95 351.7 330 52.1
PSO210G6256 Papaver somniferum HOM05D004164 ORTHO05D004891 7.2e-95 351.7 329 53.2
PSO832G0925 Papaver somniferum HOM05D004164 ORTHO05D004891 9.4e-95 351.3 332 54.2
PSO173G0010 Papaver somniferum HOM05D004164 ORTHO05D004891 3.6e-94 349.4 329 52.0
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 6.1e-94 348.6 327 53.2
PSO832G1962 Papaver somniferum HOM05D004164 ORTHO05D004891 3.0e-93 346.3 331 53.8
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.5e-92 344.0 225 71.6
PSO782G1386 Papaver somniferum HOM05D004164 ORTHO05D004891 5.7e-92 342.0 333 52.6
PSO832G4194 Papaver somniferum HOM05D004164 ORTHO05D004891 2.2e-91 340.1 338 50.6
PSO507G0030 Papaver somniferum HOM05D004164 ORTHO05D004891 8.3e-91 338.2 332 52.7
PSO832G2156 Papaver somniferum HOM05D004164 ORTHO05D004891 8.3e-91 338.2 331 52.0
PSO210G5660 Papaver somniferum HOM05D004164 ORTHO05D004891 1.1e-90 337.8 329 51.4
PSO761G0590 Papaver somniferum HOM05D004164 ORTHO05D004891 1.2e-89 334.3 329 51.1
PSO507G0017 Papaver somniferum HOM05D004164 ORTHO05D004891 2.7e-89 333.2 329 51.4
MBI18_g40410_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 3.5e-89 332.8 329 51.4
Prupe.8G063800 Prunus persica HOM05D004164 ORTHO05D004891 1.3e-88 330.9 222 73.9
Haze_10597 Corylus avellana HOM05D004164 ORTHO05D004891 1.4e-82 310.8 233 66.1
PSO761G0549 Papaver somniferum HOM05D004164 ORTHO05D004891 1.4e-82 310.8 336 48.5
MBI18_g36466_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 2.0e-81 307.0 336 48.2
PSO781G0333 Papaver somniferum HOM05D004164 ORTHO05D004891 4.5e-81 305.8 330 48.2
PSO761G0410 Papaver somniferum HOM05D004164 ORTHO05D004891 3.3e-79 299.7 336 46.1
PSO173G0166 Papaver somniferum HOM05D004164 ORTHO05D004891 2.0e-73 280.4 264 52.3
Nitab4.5_0002401g0010 Nicotiana tabacum HOM05D004164 ORTHO05D004891 3.9e-64 249.6 148 78.4
PSO507G0015 Papaver somniferum HOM05D004164 ORTHO05D004891 3.6e-62 243.0 216 55.1
Actinidia26597 Actinidia chinensis HOM05D004164 ORTHO05D004891 3.7e-59 233.0 144 77.8
FvH4_2g11900 Fragaria vesca HOM05D004164 ORTHO05D004891 4.4e-52 209.5 139 70.5
FAN24G1884 Fragaria x ananassa HOM05D004164 ORTHO05D004891 2.9e-51 206.8 179 60.3
TPR.G9891 Trifolium pratense HOM05D004164 ORTHO05D004891 6.4e-51 205.7 173 61.8
MD05G1043700 Malus domestica HOM05D004164 ORTHO05D004891 1.9e-50 204.1 217 52.5
Nn2g14913 Nelumbo nucifera HOM05D004164 ORTHO05D004891 1.0e-48 198.4 326 38.7
PSO541G2216 Papaver somniferum HOM05D004164 ORTHO05D004891 4.7e-46 189.5 196 48.5
PSO646G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 4.7e-46 189.5 176 50.6
TPR.G11284 Trifolium pratense HOM05D004164 ORTHO05D004891 5.8e-44 182.6 126 67.5
FvH4_2g11890 Fragaria vesca HOM05D004164 ORTHO05D004891 3.2e-42 176.8 136 64.0
FAN24G2526 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.2e-41 174.9 105 74.3
Pp3s30_626 Physcomitrium patens HOM05D004164 ORTHO05D004891 1.5e-36 157.9 367 32.7
TPR.G19821 Trifolium pratense HOM05D004164 ORTHO05D004891 6.4e-35 152.5 164 48.2
PRCOL_00000119 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 2.1e-33 147.5 328 31.7
Cfa023826 Carpinus fangiana HOM05D004164 ORTHO05D004891 2.2e-27 127.5 336 30.4
Prupe.8G063900 Prunus persica HOM05D004164 ORTHO05D004891 4.9e-27 126.3 79 69.6
Cfa026765 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.1e-26 125.2 350 30.0
MD10G1050600 Malus domestica HOM05D004164 ORTHO05D004891 7.1e-26 122.5 295 29.5
PSO400G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 1.3e-22 111.7 98 52.0
Cfa026889 Carpinus fangiana HOM05D004164 ORTHO05D004891 4.0e-21 106.7 367 28.9
TPR.G10092 Trifolium pratense HOM05D004164 ORTHO05D004891 5.8e-20 102.8 75 56.0
MCO10G397 Micromonas commoda HOM05D004164 ORTHO05D004891 5.5e-18 96.3 338 27.8
COL.COLO4_01173 Corchorus olitorius HOM05D004164 ORTHO05D004891 1.3e-16 91.7 163 38.7
Hma1.2p1_0784F.1_g217070 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 1.5e-15 88.2 58 72.4
CSS0002492 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 5.7e-15 86.3 58 74.1
Nn5g30063 Nelumbo nucifera HOM05D004164 ORTHO05D004891 1.4e-13 81.6 53 75.5
TAR019G0004 Trochodendron aralioides HOM05D004164 ORTHO05D004891 4.1e-13 80.1 58 69.0
TAR622G0536 Trochodendron aralioides HOM05D004164 ORTHO05D000005 7.6e-12 75.9 65 60.0
MBI02_g02172_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.0e-11 75.5 45 75.6
PRCOL_00002754 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 4.2e-10 70.1 124 37.1
Zm00001eb051650 Zea mays HOM05D004164 ORTHO05D004891 9.3e-10 68.9 42 73.8
SGA_v2.0_scaffold48G17919 Striga asiatica HOM05D004164 ORTHO05D004891 3.0e-08 63.9 48 64.6
SGA_v2.0_scaffold72G24132 Striga asiatica HOM05D004164 ORTHO05D004891 3.9e-08 63.5 46 65.2
MBI18_g38521_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 5.1e-08 63.2 120 35.8
SGA_v2.0_scaffold47G17582 Striga asiatica HOM05D004164 ORTHO05D004891 8.7e-08 62.4 51 58.8


User provided reference genes

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