Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 6.3e-168 594.0 288 100.0
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 4.3e-140 501.5 288 84.4
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 4.7e-139 498.0 288 83.3
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 6.8e-114 414.5 288 73.6
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 5.3e-98 361.7 290 63.4
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 7.6e-97 357.8 290 63.8
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 3.2e-95 352.4 295 63.4
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 2.5e-92 342.8 286 59.1
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 1.3e-91 340.5 295 62.0
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 4.0e-90 335.5 229 71.2
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 6.9e-90 334.7 279 59.9
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 9.0e-90 334.3 288 61.5
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 1.5e-89 333.6 275 61.5
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 2.6e-89 332.8 248 66.9
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 3.4e-89 332.4 250 63.6
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 5.8e-89 331.6 250 65.6
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 7.6e-89 331.3 292 59.6
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 7.6e-89 331.3 293 59.7
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 1.0e-88 330.9 264 61.4
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 1.7e-88 330.1 258 62.8
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 1.7e-88 330.1 270 60.4
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 2.2e-88 329.7 240 67.9
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 2.9e-88 329.3 272 59.9
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 2.9e-88 329.3 251 64.1
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 4.9e-88 328.6 288 61.5
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 6.5e-88 328.2 279 60.2
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.4e-87 327.0 250 64.0
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 2.5e-87 326.2 247 64.4
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 2.5e-87 326.2 247 64.4
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 5.5e-87 325.1 248 63.3
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 9.3e-87 324.3 314 54.5
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 1.2e-86 323.9 225 68.4
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 1.6e-86 323.6 238 64.7
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 3.5e-86 322.4 249 63.1
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 6.0e-86 321.6 248 62.1
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 3.0e-85 319.3 231 66.7
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 8.7e-85 317.8 238 63.4
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 1.5e-84 317.0 291 57.0
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 1.9e-84 316.6 273 58.2
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 2.5e-84 316.2 274 58.8
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 4.3e-84 315.5 247 62.3
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 7.4e-84 314.7 274 57.7
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 2.1e-83 313.2 246 61.0
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 2.8e-83 312.8 247 62.8
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 2.8e-83 312.8 243 63.0
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 3.7e-83 312.4 258 60.9
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 4.8e-83 312.0 283 56.2
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 1.1e-82 310.8 242 61.6
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 1.4e-82 310.5 283 55.8
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 5.3e-82 308.5 238 62.2
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 6.9e-82 308.1 288 54.9
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 9.0e-82 307.8 283 56.5
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 1.2e-81 307.4 249 60.2
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 2.6e-81 306.2 248 59.7
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 1.0e-80 304.3 237 60.8
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 1.3e-80 303.9 232 63.8
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 1.3e-80 303.9 237 60.8
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 5.0e-80 302.0 224 65.2
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 8.5e-80 301.2 258 59.3
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 2.5e-79 299.7 248 59.3
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 3.2e-79 299.3 247 58.7
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 1.2e-78 297.4 248 60.1
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 1.2e-78 297.4 248 60.1
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 1.3e-77 293.9 248 59.7
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 5.1e-77 292.0 232 60.8
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 8.7e-77 291.2 240 60.8
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 8.7e-77 291.2 227 60.4
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 1.1e-76 290.8 225 60.9
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 1.1e-76 290.8 225 60.9
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 1.9e-76 290.0 232 60.3
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 1.9e-76 290.0 232 60.3
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 2.5e-76 289.7 238 61.8
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 3.3e-76 289.3 249 59.8
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 9.7e-76 287.7 240 60.8
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 1.4e-74 283.9 240 61.7
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 9.0e-74 281.2 233 60.1
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 1.1e-71 274.2 223 62.8
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 1.9e-71 273.5 209 64.1
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 2.5e-71 273.1 260 54.6
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 4.2e-71 272.3 290 48.6
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 2.7e-70 269.6 237 55.3
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 6.7e-69 265.0 221 60.2
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 7.4e-68 261.5 238 55.5
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 5.3e-66 255.4 228 53.1
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 2.0e-65 253.4 190 65.8
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 4.5e-65 252.3 232 53.9
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 2.2e-64 250.0 224 57.6
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 2.5e-63 246.5 224 56.7
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 3.1e-58 229.6 165 66.1
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 4.1e-58 229.2 271 43.2
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.3e-56 224.2 182 63.2
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 3.6e-54 216.1 194 58.2
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 8.0e-54 214.9 172 60.5
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 2.4e-50 203.4 227 48.0
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 3.1e-50 203.0 181 55.8
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 1.2e-44 184.5 134 62.7
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 1.5e-44 184.1 182 56.0
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 7.5e-44 181.8 222 40.1
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.2e-41 174.5 134 61.2
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 8.5e-40 168.3 220 40.9
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 4.2e-39 166.0 222 39.2
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 8.0e-38 161.8 116 62.1
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 6.8e-29 132.1 113 54.0
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 2.2e-27 127.1 252 31.3
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.1e-26 124.8 97 60.8
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 9.2e-26 121.7 127 49.6
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 6.6e-24 115.5 194 32.0
Glyma.05G087800 Glycine max HOM05D006617 ORTHO05D008247 9.5e-23 111.7 79 63.3
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 9.5e-23 111.7 214 28.0
Lsat_1_v5_gn_8_1081 Lactuca sativa HOM05D006617 ORTHO05D008247 1.9e-18 97.4 108 50.0
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 2.0e-17 94.0 203 29.1
Pp3c8_19270 Physcomitrium patens HOM05D006617 ORTHO05D008247 7.8e-17 92.0 226 27.9
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 1.9e-15 87.4 115 38.3
MD14G1098400 Malus domestica HOM05D006617 ORTHO05D008247 4.1e-10 69.7 68 55.9
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 5.4e-10 69.3 216 23.6
Gorai.009G034900 Gossypium raimondii HOM05D003252 ORTHO05D003640 2.1e-09 67.4 216 23.1
Gohir.D07G014300 Gossypium hirsutum HOM05D003252 ORTHO05D003640 6.0e-09 65.9 205 24.4
Gorai.001G015100 Gossypium raimondii HOM05D003252 ORTHO05D003640 6.0e-09 65.9 216 23.1
AT2G31670 Arabidopsis thaliana HOM05D003252 ORTHO05D003640 1.0e-08 65.1 218 23.4
Gohir.A05G033001 Gossypium hirsutum HOM05D003252 ORTHO05D003640 1.0e-08 65.1 216 22.2
Hma1.2p1_0797F.1_g219490 Hydrangea macrophylla HOM05D003252 ORTHO05D003640 5.1e-08 62.8 255 22.7
Ah.09g231370 Amaranthus hybridus HOM05D003252 ORTHO05D003640 8.6e-08 62.0 198 25.8
Gohir.D05G034500 Gossypium hirsutum HOM05D003252 ORTHO05D003640 8.6e-08 62.0 216 22.2
PSO386G0167 Papaver somniferum HOM05D003252 ORTHO05D003640 8.6e-08 62.0 190 26.8
CARHR125300 Cardamine hirsuta HOM05D003252 ORTHO05D003640 1.5e-07 61.2 269 23.4
COL.COLO4_18119 Corchorus olitorius HOM05D003252 ORTHO05D003640 1.5e-07 61.2 216 22.2
Thecc.09G079800 Theobroma cacao HOM05D003252 ORTHO05D003640 1.5e-07 61.2 203 22.2
Carub.0004s1297 Capsella rubella HOM05D003252 ORTHO05D003640 2.5e-07 60.5 218 23.4
Sp3g21430 Schrenkiella parvula HOM05D003252 ORTHO05D003640 2.5e-07 60.5 219 23.3
PGR044G0627 Punica granatum HOM05D003252 ORTHO05D003640 4.3e-07 59.7 218 21.1
PSO210G6784 Papaver somniferum HOM05D003252 ORTHO05D003640 9.5e-07 58.5 188 23.9
Aa31sc437G20 Aethionema arabicum HOM05D003252 ORTHO05D003640 1.6e-06 57.8 219 22.4
Ciclev10012522m.g Citrus clementina HOM05D003252 ORTHO05D003640 1.6e-06 57.8 222 21.2
THA.LOC104815326 Tarenaya hassleriana HOM05D003252 ORTHO05D003640 2.1e-06 57.4 216 22.2
AL4G26910 Arabidopsis lyrata HOM05D003252 ORTHO05D003640 4.7e-06 56.2 218 22.0
CDE06G1437 Ceratophyllum demersum HOM05D006617 ORTHO05D008247 8.1e-06 55.5 70 42.9


User provided reference genes

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