Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 1.2e-75 286.6 155 100.0
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 3.3e-62 241.9 153 85.0
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 1.2e-61 240.0 153 84.3
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 6.4e-42 174.5 157 65.0
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 3.2e-41 172.2 160 63.8
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 4.6e-40 168.3 157 65.6
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 5.1e-39 164.9 155 61.3
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 5.1e-39 164.9 153 64.1
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 8.7e-39 164.1 106 82.1
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 2.5e-38 162.5 166 59.0
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 3.3e-38 162.2 156 65.4
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 3.3e-38 162.2 153 62.7
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 4.3e-38 161.8 153 62.1
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 9.6e-38 160.6 155 63.2
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 2.1e-37 159.5 159 60.4
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 3.6e-37 158.7 152 62.5
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 4.0e-36 155.2 160 58.8
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 4.0e-36 155.2 160 58.8
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 1.5e-35 153.3 166 60.2
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 2.0e-35 152.9 168 59.5
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 2.6e-35 152.5 162 60.5
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 2.6e-35 152.5 158 59.5
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 5.8e-35 151.4 156 57.1
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 5.8e-35 151.4 157 58.6
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 7.6e-35 151.0 157 59.2
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 7.6e-35 151.0 165 59.4
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 9.9e-35 150.6 162 59.9
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 9.9e-35 150.6 161 58.4
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 9.9e-35 150.6 153 58.2
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 9.9e-35 150.6 149 58.4
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 1.3e-34 150.2 153 61.4
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.3e-34 150.2 149 61.1
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 1.7e-34 149.8 145 61.4
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 2.2e-34 149.4 152 57.9
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 3.8e-34 148.7 156 58.3
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 3.8e-34 148.7 156 62.2
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 4.9e-34 148.3 151 58.3
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 8.4e-34 147.5 156 57.1
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 8.4e-34 147.5 162 56.8
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 1.1e-33 147.1 162 59.3
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 1.1e-33 147.1 160 58.1
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.4e-33 146.7 155 58.7
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 1.9e-33 146.4 157 58.0
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 2.4e-33 146.0 154 61.0
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 2.4e-33 146.0 156 57.1
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.4e-33 146.0 149 61.1
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 4.2e-33 145.2 153 58.2
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 4.2e-33 145.2 161 55.3
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 1.2e-32 143.7 151 57.6
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 1.2e-32 143.7 154 58.4
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 1.6e-32 143.3 158 59.5
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 2.7e-32 142.5 153 58.8
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 4.6e-32 141.7 153 58.2
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 4.6e-32 141.7 148 58.8
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 7.9e-32 141.0 153 58.8
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 1.0e-31 140.6 156 56.4
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 1.8e-31 139.8 129 65.1
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.8e-31 139.8 152 55.9
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 8.7e-31 137.5 145 56.6
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.1e-30 137.1 156 56.4
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 1.1e-30 137.1 157 57.3
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 1.5e-30 136.7 152 55.3
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 1.9e-30 136.3 151 54.3
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 3.3e-30 135.6 157 55.4
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 3.3e-30 135.6 196 46.9
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 5.6e-30 134.8 141 59.6
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 1.6e-29 133.3 151 55.0
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 2.1e-29 132.9 156 53.2
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 2.1e-29 132.9 151 53.6
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 2.1e-29 132.9 146 56.8
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 3.7e-29 132.1 142 56.3
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 4.8e-29 131.7 156 54.5
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 6.2e-29 131.3 142 57.0
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 6.2e-29 131.3 148 56.1
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 1.1e-28 130.6 145 56.6
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 1.4e-28 130.2 153 55.6
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 1.8e-28 129.8 142 57.0
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 1.8e-28 129.8 142 57.0
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 3.1e-28 129.0 146 56.2
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 6.9e-28 127.9 158 53.2
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 9.0e-28 127.5 157 51.6
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.6e-27 125.9 138 56.5
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.4e-27 125.6 138 55.8
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 3.4e-27 125.6 155 51.6
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 3.4e-27 125.6 133 60.2
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 5.8e-27 124.8 112 64.3
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 5.8e-27 124.8 138 55.8
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 5.8e-27 124.8 184 50.0
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.2e-26 122.9 138 55.1
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 2.2e-26 122.9 146 54.8
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 2.9e-26 122.5 144 54.2
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 3.8e-26 122.1 136 56.6
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 3.8e-26 122.1 136 56.6
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 6.5e-26 121.3 124 58.9
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 1.1e-25 120.6 155 51.6
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 1.1e-25 120.6 162 50.0
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 5.5e-25 118.2 153 52.9
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 3.5e-24 115.5 146 53.4
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 3.5e-24 115.5 136 55.1
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.9e-24 114.4 141 56.7
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 7.9e-24 114.4 181 48.1
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 3.0e-23 112.5 159 47.8
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 8.7e-23 110.9 157 49.0
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 1.5e-22 110.2 163 46.0
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 2.5e-22 109.4 155 48.4
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 7.4e-22 107.8 125 51.2
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 2.1e-21 106.3 148 45.3
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 3.7e-21 105.5 162 46.9
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 8.2e-21 104.4 154 47.4
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.8e-20 103.2 169 45.6
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.3e-20 101.7 139 51.8
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 9.0e-20 100.9 148 45.9
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 1.5e-19 100.1 150 45.3
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 2.0e-19 99.8 114 60.5
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 2.2e-18 96.3 148 48.0
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 2.5e-17 92.8 90 60.0
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.5e-17 92.8 82 69.5
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 3.2e-17 92.4 113 52.2
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 4.2e-17 92.0 114 55.3
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 5.5e-17 91.7 64 71.9
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 5.5e-17 91.7 153 43.1
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 9.3e-17 90.9 132 46.2
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 1.6e-16 90.1 159 45.3
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 7.9e-16 87.8 76 61.8
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 3.0e-15 85.9 110 50.9
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 6.7e-15 84.7 89 55.1
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 8.7e-15 84.3 167 40.1
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 1.5e-14 83.6 110 50.0
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 6.9e-12 74.7 93 47.3
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 1.5e-11 73.6 145 40.7
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 1.7e-10 70.1 89 53.9
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 1.1e-09 67.4 147 37.4
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 1.4e-09 67.0 56 66.1
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.9e-09 66.6 58 69.0
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.9e-09 66.6 58 69.0
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 2.5e-09 66.2 77 54.5
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.2e-09 65.5 77 54.5
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.5e-09 65.1 58 67.2
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 5.5e-09 65.1 86 47.7
Cre02.g097334 Chlamydomonas reinhardtii HOM05D004927 ORTHO05D005798 7.2e-09 64.7 152 34.9
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 9.4e-09 64.3 56 69.6
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 2.0e-06 56.6 79 51.9
SEGI_01314 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 4.3e-06 55.5 36 75.0
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 7.4e-06 54.7 59 57.6


User provided reference genes

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