Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011752 Sechium edule HOM05D007302 ORTHO05D009191 1.8e-61 239.2 130 100.0
CsaV3_7G031460 Cucumis sativus L. HOM05D007302 ORTHO05D009191 3.8e-56 221.5 130 92.3
ClCG09G003750 Citrullus lanatus HOM05D007302 ORTHO05D009191 1.0e-53 213.4 133 88.7
MELO3C023508.2 Cucumis melo HOM05D007302 ORTHO05D009191 1.8e-50 202.6 157 75.2
Cfa010688 Carpinus fangiana HOM05D007302 ORTHO05D009191 3.6e-46 188.3 131 78.6
Haze_03286 Corylus avellana HOM05D007302 ORTHO05D009191 6.1e-46 187.6 131 78.6
Manes.10G151800 Manihot esculenta HOM05D007302 ORTHO05D009191 8.9e-45 183.7 127 80.3
CANSAT11G0176 Cannabis sativa HOM05D007302 ORTHO05D009191 2.0e-44 182.6 124 78.2
Glyma.15G268700 Glycine max HOM05D007302 ORTHO05D009191 2.0e-44 182.6 121 76.9
MD07G1001600 Malus domestica HOM05D007302 ORTHO05D009191 2.6e-44 182.2 131 75.6
Medtr2g061420 Medicago truncatula HOM05D007302 ORTHO05D009191 2.6e-44 182.2 121 79.3
TAR369G0850 Trochodendron aralioides HOM05D007302 ORTHO05D009191 3.4e-44 181.8 127 78.7
RcHm_v2.0_Chr1g0313291 Rosa chinensis HOM05D007302 ORTHO05D009191 5.8e-44 181.0 130 77.7
TAR369G0332 Trochodendron aralioides HOM05D007302 ORTHO05D009191 5.8e-44 181.0 127 78.7
Cpa.g.sc189.6 Carica papaya HOM05D007302 ORTHO05D009191 7.5e-44 180.6 131 76.3
Ciclev10033063m.g Citrus clementina HOM05D007302 ORTHO05D009191 1.3e-43 179.9 126 77.0
Potri.001G230100 Populus trichocarpa HOM05D007302 ORTHO05D009191 1.3e-43 179.9 126 76.2
QL04p001433 Quercus lobata HOM05D007302 ORTHO05D009191 1.3e-43 179.9 120 78.3
Prupe.2G003100 Prunus persica HOM05D007302 ORTHO05D009191 1.7e-43 179.5 121 76.9
TPR.G16161 Trifolium pratense HOM05D007302 ORTHO05D009191 1.7e-43 179.5 129 74.4
Ca_02882_v3 Cicer arietinum L. HOM05D007302 ORTHO05D009191 2.2e-43 179.1 121 77.7
FAN03G0504 Fragaria x ananassa HOM05D007302 ORTHO05D009191 2.2e-43 179.1 121 76.9
Psat1g127480 Pisum sativum HOM05D007302 ORTHO05D009191 2.9e-43 178.7 121 78.5
Phvul.005G041100 Phaseolus vulgaris HOM05D007302 ORTHO05D009191 6.4e-43 177.6 121 76.0
GSVIVG01001360001 Vitis vinifera HOM05D007302 ORTHO05D009191 1.4e-42 176.4 121 77.7
THA.LOC104817151 Tarenaya hassleriana HOM05D007302 ORTHO05D009191 2.4e-42 175.6 118 78.0
TWI09G1618 Tripterygium wilfordii HOM05D007302 ORTHO05D009191 2.4e-42 175.6 130 73.8
Thecc.01G416400 Theobroma cacao HOM05D007302 ORTHO05D009191 5.4e-42 174.5 117 82.1
Lj6g0025867 Lotus japonicus HOM05D007302 ORTHO05D009191 1.2e-41 173.3 121 73.6
FvH4_7g00100 Fragaria vesca HOM05D007302 ORTHO05D009191 3.5e-41 171.8 109 83.5
Lj3g0023486 Lotus japonicus HOM05D007302 ORTHO05D009191 3.5e-41 171.8 121 72.7
Aa31LG1G25940 Aethionema arabicum HOM05D007302 ORTHO05D009191 4.6e-41 171.4 116 77.6
AT2G44360 Arabidopsis thaliana HOM05D007302 ORTHO05D009191 4.6e-41 171.4 123 74.0
Nn2g15684 Nelumbo nucifera HOM05D007302 ORTHO05D009191 4.6e-41 171.4 121 75.2
Sp4g26420 Schrenkiella parvula HOM05D007302 ORTHO05D009191 4.6e-41 171.4 117 76.9
Atru.chr11.2701 Acer truncatum HOM05D007302 ORTHO05D009191 6.0e-41 171.0 131 72.5
arahy.Tifrunner.gnm1.ann1.Z7X15P Arachis hypogaea HOM05D007302 ORTHO05D009191 6.0e-41 171.0 129 69.8
Thhalv10001676m.g Eutrema salsugineum HOM05D007302 ORTHO05D009191 6.0e-41 171.0 119 75.6
Duzib268G0295 Durio zibethinus HOM05D007302 ORTHO05D009191 7.8e-41 170.6 127 75.6
CiPaw.16G067000 Carya illinoinensis HOM05D007302 ORTHO05D009191 1.0e-40 170.2 125 72.8
Lsat_1_v5_gn_1_87261 Lactuca sativa HOM05D007302 ORTHO05D009191 1.0e-40 170.2 131 73.3
arahy.Tifrunner.gnm1.ann1.5U19IL Arachis hypogaea HOM05D007302 ORTHO05D009191 1.3e-40 169.9 124 71.8
Lalb_Chr25g0283591 Lupinus albus HOM05D007302 ORTHO05D009191 1.3e-40 169.9 127 71.7
VMungo1080G0568 Vigna mungo HOM05D007302 ORTHO05D009191 1.3e-40 169.9 121 71.9
Gohir.D08G037201 Gossypium hirsutum HOM05D007302 ORTHO05D009191 1.7e-40 169.5 121 76.0
Gorai.004G035200 Gossypium raimondii HOM05D007302 ORTHO05D009191 1.7e-40 169.5 121 76.0
DCAR_015712 Daucus carota HOM05D007302 ORTHO05D009191 3.0e-40 168.7 121 76.0
Actinidia05847 Actinidia chinensis HOM05D007302 ORTHO05D009191 3.9e-40 168.3 131 71.8
CARHR139520 Cardamine hirsuta HOM05D007302 ORTHO05D009191 5.0e-40 167.9 117 75.2
Eucgr.G03411 Eucalyptus grandis HOM05D007302 ORTHO05D009191 5.0e-40 167.9 120 75.0
MBI08_g23101_MAGBIO Magnolia biondii HOM05D007302 ORTHO05D009191 6.6e-40 167.5 126 74.6
PSO384G4593 Papaver somniferum HOM05D007302 ORTHO05D009191 8.6e-40 167.2 121 72.7
Carub.0004s2694 Capsella rubella HOM05D007302 ORTHO05D009191 1.1e-39 166.8 117 75.2
PSO339G0269 Papaver somniferum HOM05D007302 ORTHO05D009191 1.5e-39 166.4 121 73.6
QL04p001298 Quercus lobata HOM05D007302 ORTHO05D009191 1.5e-39 166.4 144 65.3
AL4G43340 Arabidopsis lyrata HOM05D007302 ORTHO05D009191 4.3e-39 164.9 123 71.5
BcaB06g29370 Brassica carinata HOM05D007302 ORTHO05D009191 4.3e-39 164.9 116 74.1
C04p70980 Brassica napus HOM05D007302 ORTHO05D009191 4.3e-39 164.9 116 74.1
BolC4t28601H Brassica oleracea HOM05D007302 ORTHO05D009191 4.3e-39 164.9 116 74.1
Gohir.A08G026680 Gossypium hirsutum HOM05D007302 ORTHO05D009191 4.3e-39 164.9 121 74.4
A04p33280 Brassica napus HOM05D007302 ORTHO05D009191 5.6e-39 164.5 116 74.1
BraA04t18789Z Brassica rapa HOM05D007302 ORTHO05D009191 5.6e-39 164.5 116 74.1
vmacro13612 Vaccinium macrocarpon HOM05D007302 ORTHO05D009191 9.5e-39 163.7 128 70.3
Actinidia31711 Actinidia chinensis HOM05D007302 ORTHO05D009191 1.2e-38 163.3 136 68.4
Sopen10g014540 Solanum pennellii HOM05D007302 ORTHO05D009191 4.0e-37 158.3 120 70.0
PGSC0003DMG400028766 Solanum tuberosum HOM05D007302 ORTHO05D009191 6.8e-37 157.5 120 70.8
Rhsim07G0050000 Rhododendron simsii HOM05D007302 ORTHO05D009191 1.2e-36 156.8 128 67.2
Sabra16G0137900 Salix brachista HOM05D007302 ORTHO05D009191 1.2e-36 156.8 166 56.0
SalBow4G1665 Salvia bowleyana HOM05D007302 ORTHO05D009191 1.5e-36 156.4 132 65.9
SalBow4G2255 Salvia bowleyana HOM05D007302 ORTHO05D009191 1.5e-36 156.4 132 65.9
Aqoxy1G00038 Aquilegia oxysepala HOM05D003342 ORTHO05D003861 2.0e-36 156.0 119 71.4
ECA248G3756 Erigeron canadensis HOM05D007302 ORTHO05D009191 2.0e-36 156.0 136 64.7
Migut.N01659 Erythranthe guttata HOM05D007302 ORTHO05D009191 2.0e-36 156.0 128 65.6
Migut.O00474 Erythranthe guttata HOM05D007302 ORTHO05D009191 2.0e-36 156.0 128 65.6
FAN06G3306 Fragaria x ananassa HOM05D007302 ORTHO05D009191 2.6e-36 155.6 108 75.9
CSS0004707 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 3.4e-36 155.2 114 76.3
MSTRG.28098 Avicennia marina HOM05D007302 ORTHO05D009191 5.8e-36 154.5 115 71.3
FAN10G3108 Fragaria x ananassa HOM05D007302 ORTHO05D009191 9.8e-36 153.7 101 80.2
Solyc10g045350.2 Solanum lycopersicum HOM05D007302 ORTHO05D009191 9.8e-36 153.7 120 69.2
CSS0001542 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 1.3e-35 153.3 114 76.3
Actinidia25680 Actinidia chinensis HOM05D007302 ORTHO05D009191 1.4e-34 149.8 106 76.4
Nn7g36009 Nelumbo nucifera HOM05D007302 ORTHO05D009191 2.4e-34 149.1 117 68.4
Peaxi162Scf00245g01315 Petunia axillaris HOM05D007302 ORTHO05D009191 5.4e-34 147.9 116 69.0
Cc02_g26960 Coffea canephora HOM05D007302 ORTHO05D009191 7.0e-34 147.5 121 69.4
HanXRQChr15g0480631 Helianthus annuus HOM05D007302 ORTHO05D009191 2.7e-33 145.6 117 68.4
unitig_736.g22290 Utricularia gibba HOM05D007302 ORTHO05D009191 6.0e-33 144.4 121 65.3
Sc11g0006270 Simmondsia chinensis HOM05D007302 ORTHO05D009191 1.0e-32 143.7 114 64.9
CDE07G1496 Ceratophyllum demersum HOM05D007302 ORTHO05D009191 3.3e-31 138.7 128 60.2
Hund06578 Selenicereus undatus HOM05D007302 ORTHO05D009191 2.8e-30 135.6 123 57.7
SGA_v2.0_scaffold95G28773 Striga asiatica HOM05D007302 ORTHO05D009191 1.4e-29 133.3 127 61.4
ATR0807G228 Amborella trichopoda HOM05D007302 ORTHO05D009191 1.8e-29 132.9 121 59.5
Dinv43937 Davidia involucrata HOM05D007302 ORTHO05D009191 4.4e-28 128.3 124 60.5
EL10Ac9g21938 Beta vulgaris HOM05D007302 ORTHO05D009191 5.8e-28 127.9 127 59.1
COL.COLO4_25061 Corchorus olitorius HOM05D007302 ORTHO05D009191 5.8e-28 127.9 115 66.1
SEGI_27997 Sequoiadendron giganteum HOM05D007302 ORTHO05D009191 1.3e-27 126.7 116 60.3
CSS0017005 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 2.2e-27 125.9 107 64.5
HPP92_022445 Vanilla planifolia HOM05D007302 ORTHO05D009191 3.0e-24 115.5 88 70.5
AUR62016377 Chenopodium quinoa HOM05D007302 ORTHO05D009191 5.1e-24 114.8 106 64.2
AUR62011558 Chenopodium quinoa HOM05D007302 ORTHO05D009191 8.6e-24 114.0 110 60.9
CSS0014571 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 6.2e-22 107.8 104 57.7
Oeu003126.2 Olea europaea HOM05D007302 ORTHO05D009191 3.1e-21 105.5 64 84.4
Pp3c17_19080 Physcomitrium patens HOM05D007302 ORTHO05D009191 1.9e-18 96.3 118 43.2
Os09g0553800 Oryza sativa ssp. japonica HOM05D007302 ORTHO05D009191 5.4e-18 94.7 69 69.6
DCAR_024994 Daucus carota HOM05D007302 ORTHO05D009191 3.9e-16 88.6 94 57.4
CBR_g22319 Chara braunii HOM05D000019 ORTHO05D000048 9.6e-15 84.0 104 40.4
Mapoly0007s0266 Marchantia polymorpha HOM05D007302 ORTHO05D009191 3.1e-13 79.0 109 42.2
MD05G1005700 Malus domestica HOM05D007302 ORTHO05D009191 1.7e-11 73.2 51 78.4
MD15G1336100 Malus domestica HOM05D007302 ORTHO05D009191 8.7e-08 60.8 53 56.6
BcaB01g03316 Brassica carinata HOM05D007302 ORTHO05D009191 9.6e-07 57.4 52 57.7


User provided reference genes

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