Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 0.0e+00 1273.8 648 100.0
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 2.3e-271 938.7 676 74.3
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 8.4e-253 877.1 715 66.9
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 3.2e-244 848.6 587 75.6
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 4.6e-174 615.5 661 52.3
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 3.9e-173 612.5 664 52.3
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 1.6e-171 607.1 664 52.3
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 1.1e-167 594.3 657 50.7
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 5.4e-167 592.0 667 49.5
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 2.0e-166 590.1 659 50.4
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 3.9e-165 585.9 662 49.4
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 2.0e-161 573.5 671 49.3
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 2.7e-158 563.1 662 46.8
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 3.0e-157 559.7 713 48.1
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 1.2e-155 554.3 666 46.4
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.8e-154 550.4 663 46.3
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 2.4e-154 550.1 654 46.9
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 1.7e-152 543.9 670 46.6
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 2.9e-152 543.1 639 46.6
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 3.2e-151 539.7 646 46.3
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 9.2e-151 538.1 643 46.2
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 9.2e-151 538.1 699 45.6
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 1.5e-148 530.8 667 48.1
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 4.3e-148 529.3 624 47.8
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 8.1e-147 525.0 667 46.2
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 7.6e-145 518.5 668 44.6
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 9.9e-145 518.1 668 44.5
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.1e-143 514.6 649 45.3
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 1.2e-142 511.1 664 43.8
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 2.7e-142 510.0 602 46.7
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 6.0e-142 508.8 669 46.3
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 1.3e-141 507.7 664 45.9
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 3.9e-141 506.1 663 43.9
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 8.7e-141 505.0 665 45.1
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 8.7e-141 505.0 682 43.1
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 1.5e-140 504.2 676 46.3
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 3.3e-140 503.1 657 42.5
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 3.3e-140 503.1 665 45.4
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 1.6e-139 500.7 665 45.4
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 2.1e-139 500.4 627 45.1
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 2.8e-139 500.0 665 46.0
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 1.4e-138 497.7 663 43.7
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 3.1e-138 496.5 658 42.7
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 4.0e-138 496.1 666 43.2
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 1.2e-137 494.6 660 42.6
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 2.0e-137 493.8 667 42.6
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 3.4e-137 493.0 672 43.9
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 3.4e-137 493.0 667 42.6
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 1.1e-135 488.0 598 46.5
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 1.2e-134 484.6 668 43.4
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 1.6e-134 484.2 660 42.0
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 2.7e-134 483.4 491 53.0
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 2.7e-134 483.4 654 43.6
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 3.5e-134 483.0 658 41.0
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 3.0e-133 479.9 667 42.6
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 1.9e-132 477.2 648 43.7
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 1.6e-131 474.2 673 42.3
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 1.8e-130 470.7 629 44.7
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 4.0e-130 469.5 756 40.2
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 1.2e-129 468.0 541 48.8
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 1.5e-129 467.6 657 43.1
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 2.9e-128 463.4 673 40.9
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 6.4e-128 462.2 681 40.7
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 4.2e-127 459.5 493 49.7
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 1.2e-126 458.0 672 41.4
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 2.7e-126 456.8 671 42.9
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 3.9e-125 453.0 785 38.5
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 1.5e-124 451.1 594 43.8
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 4.0e-122 443.0 669 41.6
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 1.4e-119 434.5 422 54.0
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 1.8e-117 427.6 612 41.5
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 3.0e-117 426.8 462 50.0
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 5.1e-117 426.0 473 48.4
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 2.2e-115 420.6 662 39.3
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 2.0e-113 414.1 566 45.1
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 2.5e-111 407.1 516 44.4
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 4.6e-110 402.9 669 39.3
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 6.1e-110 402.5 661 39.5
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 1.8e-106 391.0 485 44.3
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 7.7e-105 385.6 719 35.5
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 2.9e-104 383.6 711 34.9
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 9.7e-100 368.6 614 37.5
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 1.2e-94 351.7 686 36.6
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 1.8e-82 311.2 803 31.9
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 2.7e-78 297.4 505 37.2
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 4.7e-78 296.6 505 37.2
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 1.2e-76 292.0 684 33.6
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 3.7e-75 287.0 676 33.6
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 1.6e-70 271.6 442 37.3
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 2.8e-70 270.8 380 43.7
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 1.9e-63 248.1 710 31.0
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 2.3e-61 241.1 526 35.4
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 1.5e-60 238.4 264 47.3
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 3.7e-59 233.8 260 48.8
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 3.2e-58 230.7 259 47.5
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 3.9e-56 223.8 497 31.2
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 2.0e-44 184.9 372 35.8
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 4.0e-37 160.6 365 32.9
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 1.2e-36 159.1 196 43.9
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 9.2e-34 149.4 361 31.3
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 3.5e-33 147.5 389 30.3
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 2.2e-27 128.3 180 39.4
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 4.9e-27 127.1 201 39.3
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.4e-26 125.6 178 38.8
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 1.2e-25 122.5 497 26.4
MSTRG.9383 Avicennia marina HOM05D007228 ORTHO05D009099 1.5e-20 105.5 203 39.4
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 3.8e-19 100.9 136 41.2
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 3.5e-17 94.4 110 37.3
HanXRQChr08g0229021 Helianthus annuus HOM05D007228 ORTHO05D009099 5.3e-13 80.5 149 38.9
HPP92_021580 Vanilla planifolia HOM05D007228 ORTHO05D009099 4.9e-11 73.9 150 30.0
Lalb_Chr12g0202661 Lupinus albus HOM05D007228 ORTHO05D009099 7.1e-10 70.1 126 42.1
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 9.3e-10 69.7 81 38.3
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 2.5e-07 61.6 91 31.9
Sp6g35490 Schrenkiella parvula HOM05D007228 ORTHO05D009099 1.6e-06 58.9 141 34.8


User provided reference genes

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