Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 8.0e-163 577.0 288 100.0
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 8.4e-112 407.5 273 78.4
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 3.1e-90 335.9 246 73.2
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 1.6e-70 270.4 172 76.7
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 4.6e-70 268.9 204 69.6
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 3.0e-69 266.2 185 71.9
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 5.1e-69 265.4 181 74.0
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 5.1e-69 265.4 176 72.7
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 8.8e-69 264.6 176 72.7
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.3e-67 260.8 178 70.8
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 1.7e-67 260.4 186 69.9
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.7e-67 260.4 182 69.8
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 2.2e-67 260.0 207 64.7
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 6.3e-67 258.5 170 75.3
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 1.4e-66 257.3 211 64.5
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 2.4e-66 256.5 216 64.4
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 4.1e-66 255.8 181 71.3
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 5.3e-66 255.4 170 73.5
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 2.6e-65 253.1 169 73.4
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 4.5e-65 252.3 172 73.3
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 5.9e-65 251.9 195 67.7
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 5.9e-65 251.9 169 71.6
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 7.7e-65 251.5 178 71.3
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 7.7e-65 251.5 171 71.3
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 1.0e-64 251.1 222 60.4
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 1.3e-64 250.8 197 64.5
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 1.7e-64 250.4 198 63.6
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 2.2e-64 250.0 163 76.7
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 3.8e-64 249.2 191 63.4
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 5.0e-64 248.8 186 65.6
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 6.5e-64 248.4 175 69.1
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 8.5e-64 248.1 187 65.8
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 8.5e-64 248.1 187 65.8
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 1.9e-63 246.9 175 70.3
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 1.9e-63 246.9 174 69.5
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 2.5e-63 246.5 182 65.9
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 3.2e-63 246.1 200 61.5
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 3.2e-63 246.1 175 69.7
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 4.2e-63 245.7 211 59.7
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 4.2e-63 245.7 181 68.0
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 1.2e-62 244.2 174 70.1
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 1.6e-62 243.8 167 70.1
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 1.6e-62 243.8 164 73.8
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 2.1e-62 243.4 186 65.6
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 2.7e-62 243.0 222 59.5
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 3.6e-62 242.7 201 62.2
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 6.1e-62 241.9 172 68.6
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 7.9e-62 241.5 190 65.8
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 7.9e-62 241.5 182 66.5
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 1.0e-61 241.1 173 67.6
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 1.0e-61 241.1 187 64.2
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 1.0e-61 241.1 167 71.3
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 1.4e-61 240.7 185 71.9
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 1.8e-61 240.4 174 68.4
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 1.8e-61 240.4 243 54.7
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 5.2e-61 238.8 165 72.7
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 1.1e-60 237.7 173 67.6
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 2.0e-60 236.9 173 67.6
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 2.0e-60 236.9 173 67.6
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 2.0e-60 236.9 181 67.4
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 2.6e-60 236.5 174 67.2
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 3.3e-60 236.1 200 58.5
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 4.4e-60 235.7 227 58.1
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 4.4e-60 235.7 164 72.0
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 5.7e-60 235.3 185 63.8
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 9.7e-60 234.6 216 57.9
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 1.7e-59 233.8 175 68.0
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 4.8e-59 232.3 171 67.8
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 6.3e-59 231.9 167 70.7
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 6.3e-59 231.9 195 62.6
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 1.4e-58 230.7 170 67.6
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 1.4e-58 230.7 173 69.9
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.4e-58 229.9 167 66.5
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 2.6e-57 226.5 188 62.2
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 3.5e-57 226.1 195 63.1
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 5.9e-57 225.3 196 59.2
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 5.9e-57 225.3 196 58.7
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 7.7e-57 224.9 167 65.3
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 1.3e-56 224.2 169 65.7
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 1.7e-56 223.8 176 63.1
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 1.7e-56 223.8 169 64.5
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 1.7e-56 223.8 167 66.5
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 1.7e-56 223.8 160 68.1
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 2.9e-56 223.0 198 57.1
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 1.5e-55 220.7 168 64.3
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 2.5e-55 219.9 274 48.9
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 3.2e-55 219.5 194 60.8
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 4.2e-55 219.2 183 60.1
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 4.2e-55 219.2 183 60.1
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 9.4e-55 218.0 156 68.6
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.2e-54 217.6 192 59.9
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 2.7e-54 216.5 163 65.6
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 3.6e-54 216.1 198 59.1
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 3.6e-54 216.1 164 67.1
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 6.1e-54 215.3 160 67.5
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 6.1e-54 215.3 160 68.1
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 6.1e-54 215.3 175 61.1
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 8.0e-54 214.9 167 64.1
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 1.0e-53 214.5 160 68.1
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 2.0e-52 210.3 140 72.9
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 5.7e-52 208.8 161 60.2
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 2.8e-51 206.5 211 52.6
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 3.7e-51 206.1 179 57.0
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 4.8e-51 205.7 176 60.2
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 6.3e-51 205.3 214 54.7
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 5.3e-50 202.2 167 63.5
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 5.3e-50 202.2 194 52.6
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 1.2e-49 201.1 191 55.5
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 1.2e-49 201.1 187 57.2
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 5.0e-48 195.7 175 58.9
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 8.5e-48 194.9 229 48.5
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 2.5e-47 193.4 149 66.4
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 2.5e-47 193.4 180 55.0
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 2.5e-47 193.4 176 60.2
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 2.5e-47 193.4 200 52.0
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 4.2e-47 192.6 200 51.5
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 1.0e-45 188.0 155 59.4
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 8.8e-45 184.9 164 56.1
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 4.4e-44 182.6 143 64.3
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 1.3e-43 181.0 163 54.6
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 8.3e-43 178.3 161 55.3
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.1e-42 177.9 155 57.4
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 2.0e-41 173.7 154 56.5
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 4.5e-41 172.6 154 57.1
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 7.7e-41 171.8 203 48.8
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 5.5e-39 165.6 226 44.2
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 4.7e-38 162.5 190 46.3
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 2.3e-37 160.2 201 45.8
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 3.0e-37 159.8 193 44.0
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 6.8e-37 158.7 132 59.1
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 4.4e-36 156.0 129 62.0
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 9.8e-36 154.8 197 49.7
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.1e-34 151.4 206 45.1
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 7.0e-34 148.7 90 78.9
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 1.3e-32 144.4 83 79.5
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.7e-32 144.1 83 80.7
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 3.8e-32 142.9 171 45.0
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 1.0e-29 134.8 79 79.7
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 1.3e-27 127.9 79 73.4
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 1.6e-25 120.9 79 72.2
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.0e-25 120.6 146 48.6
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 1.1e-23 114.8 109 56.9
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 5.2e-21 105.9 156 39.1
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.5e-20 104.4 93 53.8
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 2.2e-19 100.5 74 64.9
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 1.2e-14 84.7 196 34.7
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 4.7e-14 82.8 179 32.4
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 3.4e-12 76.6 64 59.4
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 1.5e-07 61.2 35 77.1


User provided reference genes

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