Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 6.0e-176 620.9 361 100.0
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.4e-140 503.4 359 83.0
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.2e-134 483.8 353 81.6
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 5.7e-134 481.5 355 80.3
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 2.3e-127 459.5 352 75.0
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.7e-122 443.4 352 73.0
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 9.5e-121 437.6 352 72.2
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 1.0e-106 391.0 347 69.2
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 1.0e-106 391.0 347 69.2
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.3e-106 390.6 348 64.7
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 3.0e-106 389.4 348 64.9
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 6.2e-104 381.7 352 62.2
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 2.3e-103 379.8 339 66.7
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 3.7e-101 372.5 350 63.7
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 1.3e-98 364.0 346 61.8
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 7.3e-97 358.2 351 59.0
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 2.1e-96 356.7 348 62.4
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 5.8e-94 348.6 351 62.1
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 9.9e-94 347.8 350 58.6
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 4.1e-92 342.4 366 60.7
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 2.7e-91 339.7 338 63.0
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 6.0e-91 338.6 342 63.2
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 6.6e-90 335.1 353 58.6
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 8.6e-90 334.7 350 63.4
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 7.3e-89 331.6 346 56.4
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 9.6e-89 331.3 353 58.1
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 9.6e-89 331.3 357 57.4
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 9.6e-89 331.3 350 60.6
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 2.1e-88 330.1 352 60.8
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.1e-88 330.1 352 60.8
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 6.2e-88 328.6 344 54.7
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 2.4e-87 326.6 352 59.9
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.1e-87 326.2 352 57.1
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 8.9e-87 324.7 355 61.1
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 8.9e-87 324.7 355 61.1
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.5e-86 323.9 352 60.2
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.6e-86 323.2 350 59.1
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 9.9e-86 321.2 353 57.2
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 9.9e-86 321.2 355 58.6
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.7e-85 320.5 353 57.2
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 3.8e-85 319.3 353 59.8
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 1.1e-84 317.8 346 56.4
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 1.4e-84 317.4 357 52.7
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 2.4e-84 316.6 353 58.1
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 3.2e-84 316.2 350 56.0
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 3.2e-84 316.2 354 56.8
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 7.1e-84 315.1 358 55.3
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 2.1e-83 313.5 350 56.0
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 3.9e-82 309.3 348 54.6
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 6.6e-82 308.5 349 57.9
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.5e-81 306.6 352 54.8
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 4.3e-81 305.8 350 57.1
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 1.3e-80 304.3 356 56.2
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 3.6e-80 302.8 348 57.2
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 5.3e-79 298.9 353 53.5
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 5.3e-79 298.9 360 53.6
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 1.5e-78 297.4 353 53.5
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 8.4e-77 291.6 357 56.3
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 9.3e-76 288.1 357 52.1
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 1.2e-75 287.7 349 53.9
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 7.9e-75 285.0 359 51.8
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 1.0e-74 284.6 348 52.0
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 1.0e-74 284.6 363 51.0
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 6.7e-74 282.0 349 55.0
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 1.1e-73 281.2 359 49.9
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 1.1e-73 281.2 348 51.7
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 1.1e-73 281.2 359 50.7
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 3.3e-73 279.6 341 51.9
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 7.4e-73 278.5 360 50.6
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 7.4e-73 278.5 372 49.5
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 1.6e-72 277.3 353 51.0
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 1.6e-72 277.3 353 51.0
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 1.6e-72 277.3 353 54.1
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 4.8e-72 275.8 353 50.4
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 1.4e-71 274.2 336 52.4
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 2.0e-70 270.4 353 53.3
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 4.5e-70 269.2 332 50.3
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 4.5e-70 269.2 360 48.9
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 4.5e-70 269.2 360 48.9
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 2.9e-69 266.5 389 47.6
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 4.9e-69 265.8 345 48.4
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 2.4e-68 263.5 380 48.2
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 5.5e-68 262.3 377 52.0
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 1.6e-67 260.8 342 49.1
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 3.0e-66 256.5 356 46.6
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 2.0e-62 243.8 359 47.9
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 2.0e-62 243.8 374 44.7
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 2.6e-62 243.4 309 48.5
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 4.5e-62 242.7 369 43.4
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 5.8e-62 242.3 355 48.7
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 1.0e-61 241.5 344 46.8
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 1.0e-61 241.5 276 58.3
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 4.2e-60 236.1 349 49.3
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 7.1e-60 235.3 369 48.0
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 2.1e-59 233.8 355 45.1
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 4.6e-59 232.6 370 48.1
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 7.9e-59 231.9 368 47.0
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 1.8e-58 230.7 367 46.9
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 2.5e-57 226.9 353 45.0
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 7.4e-57 225.3 365 46.0
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 9.6e-57 224.9 337 43.9
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 8.2e-56 221.9 342 45.6
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 2.6e-54 216.9 372 44.1
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 5.9e-54 215.7 346 44.2
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 8.5e-53 211.8 332 46.4
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 3.2e-52 209.9 335 43.0
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 4.2e-52 209.5 346 43.1
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 1.2e-51 208.0 348 48.9
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 3.0e-50 203.4 350 41.7
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 1.9e-49 200.7 357 40.1
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 2.5e-49 200.3 302 43.0
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 3.3e-49 199.9 342 41.5
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 9.7e-49 198.4 347 44.7
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 9.7e-49 198.4 342 45.0
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 1.8e-47 194.1 267 53.9
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 1.5e-46 191.0 318 40.6
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 2.5e-44 183.7 344 41.3
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 1.8e-42 177.6 295 40.7
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 2.3e-42 177.2 208 56.7
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 9.7e-41 171.8 349 37.8
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 4.7e-35 152.9 277 43.7
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 1.5e-33 147.9 353 37.4
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 9.7e-33 145.2 348 34.2
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 2.2e-32 144.1 321 38.0
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 6.3e-32 142.5 311 33.4
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 1.1e-31 141.7 373 35.7
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 2.4e-31 140.6 305 33.4
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 4.5e-30 136.3 318 33.6
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 7.7e-30 135.6 339 33.3
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 1.3e-29 134.8 356 33.1
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 3.8e-29 133.3 202 45.5
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 6.1e-27 125.9 107 61.7
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 2.0e-25 120.9 174 42.5
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 2.2e-21 107.5 105 55.2
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 1.5e-20 104.8 197 49.7
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 3.2e-20 103.6 173 46.8
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 3.0e-18 97.1 170 40.0
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 3.7e-16 90.1 426 25.8
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 1.4e-15 88.2 89 48.3
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 2.9e-13 80.5 112 44.6
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 1.1e-12 78.6 267 33.7
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 1.4e-10 71.6 345 27.5
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 1.2e-09 68.6 43 69.8
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 1.5e-09 68.2 172 36.0
RcHm_v2.0_Chr5g0061161 Rosa chinensis HOM05D004638 ORTHO05D005443 4.4e-09 66.6 43 67.4
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 3.7e-08 63.5 139 44.6
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 9.2e-07 58.9 153 31.4


User provided reference genes

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