Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011609 Sechium edule HOM05D006312 ORTHO05D007843 1.9e-110 402.5 202 100.0
MELO3C007014.2 Cucumis melo HOM05D006312 ORTHO05D007843 5.9e-80 301.2 179 82.7
CsaV3_6G052950 Cucumis sativus L. HOM05D006312 ORTHO05D007843 1.5e-78 296.6 173 85.0
ClCG01G025710 Citrullus lanatus HOM05D006312 ORTHO05D007843 1.9e-78 296.2 184 79.3
TAR376G0343 Trochodendron aralioides HOM05D006312 ORTHO05D007843 1.6e-56 223.4 170 64.7
Eucgr.J02573 Eucalyptus grandis HOM05D006312 ORTHO05D007843 4.6e-56 221.9 139 77.0
COL.COLO4_27421 Corchorus olitorius HOM05D006312 ORTHO05D007843 1.0e-55 220.7 133 78.2
Hund13396 Selenicereus undatus HOM05D006312 ORTHO05D007843 1.0e-55 220.7 136 76.5
Thecc.05G202100 Theobroma cacao HOM05D006312 ORTHO05D007843 1.3e-55 220.3 132 77.3
Atru.chr2.1887 Acer truncatum HOM05D006312 ORTHO05D007843 3.0e-55 219.2 152 71.7
CANSAT21G2119 Cannabis sativa HOM05D006312 ORTHO05D007843 3.9e-55 218.8 132 77.3
RcHm_v2.0_Chr2g0096661 Rosa chinensis HOM05D006312 ORTHO05D007843 6.6e-55 218.0 187 58.3
Ciclev10012864m.g Citrus clementina HOM05D006312 ORTHO05D007843 8.6e-55 217.6 148 71.6
Aqoxy6G03048 Aquilegia oxysepala HOM05D006312 ORTHO05D007843 1.1e-54 217.2 133 77.4
Prupe.7G188400 Prunus persica HOM05D006312 ORTHO05D007843 1.5e-54 216.9 187 59.9
PGR102G2008 Punica granatum HOM05D006312 ORTHO05D007843 1.9e-54 216.5 167 66.5
Potri.001G455900 Populus trichocarpa HOM05D006312 ORTHO05D007843 5.6e-54 214.9 133 77.4
MBI04_g11525_MAGBIO Magnolia biondii HOM05D006312 ORTHO05D007843 7.3e-54 214.5 143 71.3
MD02G1107600 Malus domestica HOM05D006312 ORTHO05D007843 7.3e-54 214.5 182 61.0
Sc10g0004590 Simmondsia chinensis HOM05D006312 ORTHO05D007843 1.2e-53 213.8 146 72.6
Cpa.g.sc178.37 Carica papaya HOM05D006312 ORTHO05D007843 2.8e-53 212.6 141 70.9
Sabra16G0308500 Salix brachista HOM05D006312 ORTHO05D007843 2.8e-53 212.6 133 76.7
CSS0005301 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 3.6e-53 212.2 133 74.4
CSS0026635 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 3.6e-53 212.2 133 74.4
Actinidia28758 Actinidia chinensis HOM05D006312 ORTHO05D007843 3.1e-52 209.1 142 71.1
TPR.G19116 Trifolium pratense HOM05D006312 ORTHO05D007843 3.1e-52 209.1 132 73.5
TWI34G0319 Tripterygium wilfordii HOM05D006312 ORTHO05D007843 3.1e-52 209.1 192 58.3
Gorai.013G007100 Gossypium raimondii HOM05D006312 ORTHO05D007843 4.0e-52 208.8 125 76.8
Gohir.A13G006700 Gossypium hirsutum HOM05D006312 ORTHO05D007843 8.9e-52 207.6 125 76.0
Manes.02G117611 Manihot esculenta HOM05D006312 ORTHO05D007843 8.9e-52 207.6 134 76.1
Gohir.D13G006900 Gossypium hirsutum HOM05D006312 ORTHO05D007843 1.2e-51 207.2 125 76.0
ATR0605G230 Amborella trichopoda HOM05D006312 ORTHO05D007843 1.5e-51 206.8 126 76.2
Ca_08638_v3 Cicer arietinum L. HOM05D006312 ORTHO05D007843 3.4e-51 205.7 134 72.4
VMungo1383G0261 Vigna mungo HOM05D006312 ORTHO05D007843 3.4e-51 205.7 144 67.4
Psat3g060840 Pisum sativum HOM05D006312 ORTHO05D007843 4.4e-51 205.3 133 73.7
Cfa007119 Carpinus fangiana HOM05D006312 ORTHO05D007843 5.8e-51 204.9 141 70.2
EL10Ac2g02752 Beta vulgaris HOM05D006312 ORTHO05D007843 7.6e-51 204.5 144 69.4
Rhsim08G0025300 Rhododendron simsii HOM05D006312 ORTHO05D007843 7.6e-51 204.5 137 73.0
Actinidia35692 Actinidia chinensis HOM05D006312 ORTHO05D007843 9.9e-51 204.1 134 72.4
arahy.Tifrunner.gnm1.ann1.YWP2KZ Arachis hypogaea HOM05D006312 ORTHO05D007843 9.9e-51 204.1 149 67.8
arahy.Tifrunner.gnm1.ann1.Y34PHS Arachis hypogaea HOM05D006312 ORTHO05D007843 1.3e-50 203.8 149 67.8
Lsat_1_v5_gn_3_68340 Lactuca sativa HOM05D006312 ORTHO05D007843 1.3e-50 203.8 142 69.0
Glyma.03G158200 Glycine max HOM05D006312 ORTHO05D007843 2.2e-50 203.0 140 68.6
Hma1.2p1_0034F.1_g021580 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 2.9e-50 202.6 139 71.9
Phvul.001G155800 Phaseolus vulgaris HOM05D006312 ORTHO05D007843 6.4e-50 201.4 132 70.5
FAN19G0451 Fragaria x ananassa HOM05D006312 ORTHO05D007843 4.1e-49 198.7 186 57.5
Glyma.19G160500 Glycine max HOM05D006312 ORTHO05D007843 4.1e-49 198.7 177 58.2
HanXRQChr16g0532211 Helianthus annuus HOM05D006312 ORTHO05D007843 5.4e-49 198.4 131 73.3
AL5G31950 Arabidopsis lyrata HOM05D006312 ORTHO05D007843 9.2e-49 197.6 175 60.0
PSO541G2566 Papaver somniferum HOM05D006312 ORTHO05D007843 1.2e-48 197.2 134 71.6
PSO675G2564 Papaver somniferum HOM05D006312 ORTHO05D007843 1.6e-48 196.8 183 56.3
FAN23G3058 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.7e-48 196.1 187 54.5
FvH4_1g09790 Fragaria vesca HOM05D006312 ORTHO05D007843 3.5e-48 195.7 186 57.0
FAN23G0139 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.5e-48 195.7 186 57.0
FAN26G2993 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.5e-48 195.7 186 57.0
FAN28G0218 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.5e-48 195.7 130 72.3
Cc07_g12330 Coffea canephora HOM05D006312 ORTHO05D007843 4.6e-48 195.3 135 68.9
DCAR_016700 Daucus carota HOM05D006312 ORTHO05D007843 4.6e-48 195.3 133 72.9
ECA246G0189 Erigeron canadensis HOM05D006312 ORTHO05D007843 4.6e-48 195.3 143 66.4
A01p23400 Brassica napus HOM05D006312 ORTHO05D007843 6.0e-48 194.9 154 63.6
BraA01t02247Z Brassica rapa HOM05D006312 ORTHO05D007843 6.0e-48 194.9 154 63.6
Lj1g0018795 Lotus japonicus HOM05D006312 ORTHO05D007843 6.0e-48 194.9 141 68.1
AT3G51510 Arabidopsis thaliana HOM05D006312 ORTHO05D007843 7.8e-48 194.5 175 59.4
AUR62031725 Chenopodium quinoa HOM05D006312 ORTHO05D007843 7.8e-48 194.5 135 69.6
AUR62032612 Chenopodium quinoa HOM05D006312 ORTHO05D007843 2.3e-47 193.0 150 64.7
THA.LOC104808852 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 3.9e-47 192.2 178 57.9
C01p29030 Brassica napus HOM05D006312 ORTHO05D007843 5.1e-47 191.8 139 66.9
BolC1t02835H Brassica oleracea HOM05D006312 ORTHO05D007843 5.1e-47 191.8 139 66.9
Carub.0005s1789 Capsella rubella HOM05D006312 ORTHO05D007843 5.1e-47 191.8 183 56.3
CAN.G883.25 Capsicum annuum HOM05D006312 ORTHO05D007843 6.6e-47 191.4 136 69.1
CARHR161090 Cardamine hirsuta HOM05D006312 ORTHO05D007843 6.6e-47 191.4 135 68.1
Potri.011G146200 Populus trichocarpa HOM05D006312 ORTHO05D007843 6.6e-47 191.4 112 77.7
Sopen02g017370 Solanum pennellii HOM05D006312 ORTHO05D007843 8.6e-47 191.0 161 62.1
BcaNung00380 Brassica carinata HOM05D006312 ORTHO05D007843 1.5e-46 190.3 139 66.2
QL06p053470 Quercus lobata HOM05D006312 ORTHO05D007843 1.5e-46 190.3 146 66.4
Oeu024786.1 Olea europaea HOM05D006312 ORTHO05D007843 1.9e-46 189.9 141 67.4
Nitab4.5_0003878g0040 Nicotiana tabacum HOM05D006312 ORTHO05D007843 2.5e-46 189.5 136 67.6
Solyc02g068270.4 Solanum lycopersicum HOM05D006312 ORTHO05D007843 2.5e-46 189.5 160 61.2
Nitab4.5_0003141g0020 Nicotiana tabacum HOM05D006312 ORTHO05D007843 4.3e-46 188.7 136 67.6
Sp5g10730 Schrenkiella parvula HOM05D006312 ORTHO05D007843 5.6e-46 188.3 139 64.7
THA.LOC104815359 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 7.3e-46 188.0 134 68.7
Peaxi162Scf00981g00214 Petunia axillaris HOM05D006312 ORTHO05D007843 9.6e-46 187.6 121 72.7
Medtr7g095930 Medicago truncatula HOM05D006312 ORTHO05D007843 2.1e-45 186.4 133 69.2
A09p44660 Brassica napus HOM05D006312 ORTHO05D007843 2.8e-45 186.0 151 62.9
MSTRG.3652 Avicennia marina HOM05D006312 ORTHO05D007843 4.7e-45 185.3 143 66.4
BcaB01g00508 Brassica carinata HOM05D006312 ORTHO05D007843 4.7e-45 185.3 133 68.4
C08p26760 Brassica napus HOM05D006312 ORTHO05D007843 6.2e-45 184.9 151 61.6
BolC8t50289H Brassica oleracea HOM05D006312 ORTHO05D007843 6.2e-45 184.9 151 61.6
BraA09t39926Z Brassica rapa HOM05D006312 ORTHO05D007843 6.2e-45 184.9 150 62.7
Thhalv10010756m.g Eutrema salsugineum HOM05D006312 ORTHO05D007843 6.2e-45 184.9 131 67.2
SalBow5G1176 Salvia bowleyana HOM05D006312 ORTHO05D007843 1.1e-44 184.1 117 73.5
Dinv28290 Davidia involucrata HOM05D006312 ORTHO05D007843 5.2e-44 181.8 125 70.4
SGA_v2.0_scaffold132G34566 Striga asiatica HOM05D006312 ORTHO05D007843 5.2e-44 181.8 118 71.2
Dinv24398 Davidia involucrata HOM05D006312 ORTHO05D007843 6.8e-44 181.4 124 70.2
HPP92_005603 Vanilla planifolia HOM05D006312 ORTHO05D007843 8.9e-44 181.0 149 59.7
SEGI_12518 Sequoiadendron giganteum HOM05D006312 ORTHO05D007843 1.5e-43 180.3 132 65.2
CDE07G0026 Ceratophyllum demersum HOM05D006312 ORTHO05D007843 5.8e-43 178.3 174 57.5
FAN23G0893 Fragaria x ananassa HOM05D006312 ORTHO05D007843 5.8e-43 178.3 105 78.1
Migut.K01209 Erythranthe guttata HOM05D006312 ORTHO05D007843 1.3e-42 177.2 136 63.2
Lalb_Chr01g0019941 Lupinus albus HOM05D006312 ORTHO05D007843 6.4e-42 174.9 129 69.0
CiPaw.08G182900 Carya illinoinensis HOM05D006312 ORTHO05D007843 5.4e-41 171.8 116 72.4
Nn6g34643 Nelumbo nucifera HOM05D006312 ORTHO05D007843 7.1e-41 171.4 106 75.5
MD15G1226900 Malus domestica HOM05D006312 ORTHO05D007843 2.7e-40 169.5 162 57.4
Zm00001eb291320 Zea mays HOM05D006312 ORTHO05D007843 2.7e-40 169.5 127 64.6
vmacro18480 Vaccinium macrocarpon HOM05D006312 ORTHO05D007843 3.9e-39 165.6 113 71.7
Os05g0490900 Oryza sativa ssp. japonica HOM05D006312 ORTHO05D007843 2.5e-38 162.9 175 50.9
Haze_03648 Corylus avellana HOM05D006312 ORTHO05D007843 9.6e-38 161.0 124 66.1
Lj2A507T48 Lonicera japonica HOM05D006312 ORTHO05D007843 9.6e-38 161.0 113 67.3
Ah.12g058670 Amaranthus hybridus HOM05D006312 ORTHO05D007843 2.4e-36 156.4 95 76.8
Hma1.2p1_0034F.1_g021590 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 2.0e-35 153.3 113 68.1
unitig_748.g7258 Utricularia gibba HOM05D006312 ORTHO05D007843 2.0e-35 153.3 134 56.7
AagrBONN_evm.TU.Sc2ySwM_117.3170 Anthoceros agrestis HOM05D006312 ORTHO05D007843 7.6e-35 151.4 151 53.6
GSVIVG01026613001 Vitis vinifera HOM05D006312 ORTHO05D007843 3.2e-33 146.0 88 73.9
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.6e-32 143.7 97 71.1
SMO356G0733 Selaginella moellendorffii HOM05D006312 ORTHO05D007843 1.6e-32 143.7 110 60.9
CBR_g16852 Chara braunii HOM05D006312 ORTHO05D007843 3.5e-32 142.5 111 62.2
Pp3c12_25230 Physcomitrium patens HOM05D006312 ORTHO05D007843 1.3e-29 134.0 124 53.2
Mapoly0072s0008 Marchantia polymorpha HOM05D006312 ORTHO05D007843 2.8e-29 132.9 122 50.8
Cre16.g679300 Chlamydomonas reinhardtii HOM05D006312 ORTHO05D007843 8.4e-18 94.7 117 46.2
Aa31LG10G3290 Aethionema arabicum HOM05D001371 ORTHO05D001319 1.9e-17 93.6 77 61.0
MCO03G312 Micromonas commoda HOM05D006312 ORTHO05D007843 3.9e-15 85.9 98 46.9
CSS0018042 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 1.9e-14 83.6 51 74.5
CSS0013138 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 3.8e-10 69.3 61 52.5
Manes.01G158400 Manihot esculenta HOM05D006312 ORTHO05D007843 3.9e-07 59.3 65 55.4
PRCOL_00002065 Prasinoderma coloniale HOM05D006312 ORTHO05D007843 3.9e-07 59.3 81 42.0


User provided reference genes

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