Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011593 Sechium edule HOM05D007507 ORTHO05D009420 1.7e-58 229.2 120 100.0
ClCG01G023220 Citrullus lanatus HOM05D007507 ORTHO05D009420 1.1e-33 146.7 125 65.6
MELO3C007264.2 Cucumis melo HOM05D007507 ORTHO05D009420 5.7e-30 134.4 127 64.6
CsaV3_6G050370 Cucumis sativus L. HOM05D007507 ORTHO05D009420 8.2e-29 130.6 127 63.8
Actinidia16570 Actinidia chinensis HOM05D007507 ORTHO05D009420 1.2e-19 100.1 122 49.2
TAR626G1744 Trochodendron aralioides HOM05D007507 ORTHO05D009420 2.2e-18 95.9 122 49.2
VMungo0251G0526 Vigna mungo HOM05D007507 ORTHO05D009420 5.0e-18 94.7 127 46.5
TPR.G19926 Trifolium pratense HOM05D007507 ORTHO05D009420 8.5e-18 94.0 127 48.0
MD10G1289800 Malus domestica HOM05D007507 ORTHO05D009420 1.1e-17 93.6 123 45.5
QL05p042078 Quercus lobata HOM05D007507 ORTHO05D009420 1.9e-17 92.8 122 48.4
Glyma.07G201000 Glycine max HOM05D007507 ORTHO05D009420 3.2e-17 92.0 127 46.5
Glyma.13G175400 Glycine max HOM05D007507 ORTHO05D009420 3.2e-17 92.0 127 47.2
Actinidia05654 Actinidia chinensis HOM05D007507 ORTHO05D009420 5.5e-17 91.3 121 45.5
GSVIVG01021107001 Vitis vinifera HOM05D007507 ORTHO05D009420 7.2e-17 90.9 124 48.4
Prupe.4G051900 Prunus persica HOM05D007507 ORTHO05D009420 9.4e-17 90.5 117 48.7
RcHm_v2.0_Chr5g0009091 Rosa chinensis HOM05D007507 ORTHO05D009420 1.2e-16 90.1 124 43.5
Hma1.2p1_0558F.1_g178550 Hydrangea macrophylla HOM05D007507 ORTHO05D009420 2.1e-16 89.4 118 46.6
Phvul.002G232000 Phaseolus vulgaris HOM05D007507 ORTHO05D009420 2.7e-16 89.0 127 44.1
PGSC0003DMG400031763 Solanum tuberosum HOM05D007507 ORTHO05D009420 4.7e-16 88.2 122 45.9
FAN21G1585 Fragaria x ananassa HOM05D007507 ORTHO05D009420 6.1e-16 87.8 123 44.7
Glyma.15G077500 Glycine max HOM05D007507 ORTHO05D009420 6.1e-16 87.8 124 48.4
Duzib235G0685 Durio zibethinus HOM05D007507 ORTHO05D009420 8.0e-16 87.4 126 42.1
Sopen02g022610 Solanum pennellii HOM05D007507 ORTHO05D009420 8.0e-16 87.4 123 44.7
TPR.G39426 Trifolium pratense HOM05D007507 ORTHO05D009420 8.0e-16 87.4 127 44.1
Psat7g115600 Pisum sativum HOM05D007507 ORTHO05D009420 1.0e-15 87.0 126 46.8
Thecc.06G181600 Theobroma cacao HOM05D007507 ORTHO05D009420 1.0e-15 87.0 123 43.9
FvH4_3g08680 Fragaria vesca HOM05D007507 ORTHO05D009420 1.4e-15 86.7 120 44.2
MD05G1310700 Malus domestica HOM05D007507 ORTHO05D009420 1.4e-15 86.7 122 42.6
Manes.17G048900 Manihot esculenta HOM05D007507 ORTHO05D009420 2.3e-15 85.9 114 44.7
Solyc02g077720.4 Solanum lycopersicum HOM05D007507 ORTHO05D009420 3.0e-15 85.5 123 43.9
CSS0001598 Camellia sinensis var. sinensis HOM05D007507 ORTHO05D009420 4.0e-15 85.1 122 43.4
Glyma.13G236200 Glycine max HOM05D007507 ORTHO05D009420 4.0e-15 85.1 117 50.4
Nitab4.5_0007893g0030 Nicotiana tabacum HOM05D007507 ORTHO05D009420 4.0e-15 85.1 128 41.4
CiPaw.10G052300 Carya illinoinensis HOM05D007507 ORTHO05D009420 8.8e-15 84.0 123 42.3
Lalb_Chr20g0121601 Lupinus albus HOM05D007507 ORTHO05D009420 1.2e-14 83.6 124 43.5
Dinv40597 Davidia involucrata HOM05D007507 ORTHO05D009420 2.0e-14 82.8 127 43.3
Medtr4g088390 Medicago truncatula HOM05D007507 ORTHO05D009420 2.6e-14 82.4 129 46.5
Nn1g04226 Nelumbo nucifera HOM05D007507 ORTHO05D009420 2.6e-14 82.4 112 43.8
Sabra11G0039300 Salix brachista HOM05D007507 ORTHO05D009420 2.6e-14 82.4 127 44.1
FAN11G0818 Fragaria x ananassa HOM05D007507 ORTHO05D009420 3.4e-14 82.0 121 43.8
CANSAT35G2017 Cannabis sativa HOM05D007507 ORTHO05D009420 4.4e-14 81.6 123 44.7
Nitab4.5_0002813g0060 Nicotiana tabacum HOM05D007507 ORTHO05D009420 4.4e-14 81.6 128 39.8
Duzib192G0611 Durio zibethinus HOM05D007507 ORTHO05D009420 5.7e-14 81.3 127 44.1
Manes.16G031300 Manihot esculenta HOM05D007507 ORTHO05D009420 7.5e-14 80.9 123 40.7
Medtr2g014380 Medicago truncatula HOM05D007507 ORTHO05D009420 7.5e-14 80.9 123 40.7
Potri.011G057400 Populus trichocarpa HOM05D007507 ORTHO05D009420 9.8e-14 80.5 127 43.3
Dinv17350 Davidia involucrata HOM05D007507 ORTHO05D009420 2.8e-13 79.0 122 45.1
Lsat_1_v5_gn_7_22681 Lactuca sativa HOM05D007507 ORTHO05D009420 2.8e-13 79.0 121 43.8
arahy.Tifrunner.gnm1.ann1.IERL18 Arachis hypogaea HOM05D007507 ORTHO05D009420 4.8e-13 78.2 131 42.0
arahy.Tifrunner.gnm1.ann1.UCBT0G Arachis hypogaea HOM05D007507 ORTHO05D009420 4.8e-13 78.2 131 41.2
HanXRQChr04g0113131 Helianthus annuus HOM05D007507 ORTHO05D009420 4.8e-13 78.2 120 42.5
Sabra04G0030100 Salix brachista HOM05D007507 ORTHO05D009420 4.8e-13 78.2 127 42.5
Potri.004G048201 Populus trichocarpa HOM05D007507 ORTHO05D009420 1.1e-12 77.0 127 43.3
Cc02_g13780 Coffea canephora HOM05D007507 ORTHO05D009420 1.8e-12 76.3 127 40.2
arahy.Tifrunner.gnm1.ann1.XNU6AG Arachis hypogaea HOM05D007507 ORTHO05D009420 2.4e-12 75.9 125 40.0
PGR042G2392 Punica granatum HOM05D007507 ORTHO05D009420 2.4e-12 75.9 122 42.6
MBI07_g29118_MAGBIO Magnolia biondii HOM05D007507 ORTHO05D009420 4.1e-12 75.1 122 40.2
Phvul.006G182800 Phaseolus vulgaris HOM05D007507 ORTHO05D009420 5.4e-12 74.7 114 45.6
arahy.Tifrunner.gnm1.ann1.26E61A Arachis hypogaea HOM05D007507 ORTHO05D009420 7.0e-12 74.3 114 41.2
Eucgr.E03247 Eucalyptus grandis HOM05D007507 ORTHO05D009420 7.0e-12 74.3 127 40.2
Cpa.g.sc27.9 Carica papaya HOM05D007507 ORTHO05D009420 2.7e-11 72.4 121 40.5
Migut.M01111 Erythranthe guttata HOM05D007507 ORTHO05D009420 3.5e-11 72.0 93 47.3
Lj4g0010126 Lotus japonicus HOM05D007507 ORTHO05D009420 3.5e-11 72.0 128 41.4
Gohir.D09G073200 Gossypium hirsutum HOM05D007507 ORTHO05D009420 5.9e-11 71.2 103 41.7
Gorai.006G088200 Gossypium raimondii HOM05D007507 ORTHO05D009420 5.9e-11 71.2 103 41.7
Rhsim13G0180100 Rhododendron simsii HOM05D007507 ORTHO05D009420 5.9e-11 71.2 85 49.4
Migut.H01473 Erythranthe guttata HOM05D007507 ORTHO05D009420 7.7e-11 70.9 125 41.6
Gohir.A05G159400 Gossypium hirsutum HOM05D007507 ORTHO05D009420 7.7e-11 70.9 130 41.5
Gohir.A09G073500 Gossypium hirsutum HOM05D007507 ORTHO05D009420 1.3e-10 70.1 103 40.8
Gohir.D05G162100 Gossypium hirsutum HOM05D007507 ORTHO05D009420 1.3e-10 70.1 117 42.7
DCAR_004049 Daucus carota HOM05D007507 ORTHO05D009420 2.3e-10 69.3 116 41.4
Oeu064800.1 Olea europaea HOM05D007507 ORTHO05D009420 2.3e-10 69.3 121 41.3
Gorai.009G167100 Gossypium raimondii HOM05D007507 ORTHO05D009420 2.9e-10 68.9 119 42.9
VMungo0540G0304 Vigna mungo HOM05D007507 ORTHO05D009420 2.9e-10 68.9 119 42.9
Ciclev10016932m.g Citrus clementina HOM05D007507 ORTHO05D009420 5.0e-10 68.2 121 40.5
Oeu027697.1 Olea europaea HOM05D007507 ORTHO05D009420 5.0e-10 68.2 121 39.7
Aqoxy4G00641 Aquilegia oxysepala HOM05D007507 ORTHO05D009420 1.1e-09 67.0 109 41.3
Oeu015676.1 Olea europaea HOM05D007507 ORTHO05D009420 1.1e-09 67.0 118 40.7
MSTRG.14710 Avicennia marina HOM05D007507 ORTHO05D009420 2.5e-09 65.9 118 40.7
TWI38G1903 Tripterygium wilfordii HOM05D007507 ORTHO05D009420 3.3e-09 65.5 102 44.1
Atru.chr10.1803 Acer truncatum HOM05D007507 ORTHO05D009420 9.5e-09 63.9 139 37.4
Psat1g203160 Pisum sativum HOM05D007507 ORTHO05D009420 1.2e-08 63.5 103 38.8
ECA236G3296 Erigeron canadensis HOM05D007507 ORTHO05D009420 1.6e-08 63.2 63 60.3
DCAR_008007 Daucus carota HOM05D007507 ORTHO05D009420 2.8e-08 62.4 105 40.0
Gohir.D06G135900 Gossypium hirsutum HOM05D007507 ORTHO05D009420 4.7e-08 61.6 109 40.4
Gorai.010G158100 Gossypium raimondii HOM05D007507 ORTHO05D009420 4.7e-08 61.6 108 40.7
Atru.chr10.1804 Acer truncatum HOM05D007507 ORTHO05D009420 1.0e-07 60.5 120 37.5
PSO675G6999 Papaver somniferum HOM05D007507 ORTHO05D009420 1.4e-07 60.1 117 37.6
SEGI_17757 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 3.0e-07 58.9 65 50.8


User provided reference genes

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