Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011432 Sechium edule HOM05D006797 ORTHO05D007696 7.3e-51 203.8 115 100.0
ClCG01G025860 Citrullus lanatus HOM05D006797 ORTHO05D007696 5.3e-41 171.0 121 86.0
MELO3C007002.2 Cucumis melo HOM05D006797 ORTHO05D007696 2.0e-40 169.1 121 82.6
CsaV3_6G053080 Cucumis sativus L. HOM05D006797 ORTHO05D007696 8.4e-39 163.7 121 80.2
Glyma.05G134500 Glycine max HOM05D006797 ORTHO05D007696 1.2e-29 133.3 116 74.1
Lalb_Chr07g0188191 Lupinus albus HOM05D006797 ORTHO05D007696 2.1e-29 132.5 116 75.0
Glyma.08G089600 Glycine max HOM05D006797 ORTHO05D007696 7.9e-29 130.6 116 73.3
QL11p011767 Quercus lobata HOM05D006797 ORTHO05D007696 1.0e-28 130.2 121 69.4
CiPaw.10G107100 Carya illinoinensis HOM05D006797 ORTHO05D007696 1.1e-27 126.7 116 70.7
TAR626G0010 Trochodendron aralioides HOM05D006797 ORTHO05D007696 1.9e-27 125.9 121 66.9
GSVIVG01012170001 Vitis vinifera HOM05D006797 ORTHO05D007696 1.9e-27 125.9 125 65.6
arahy.Tifrunner.gnm1.ann1.30I9D2 Arachis hypogaea HOM05D006797 ORTHO05D007696 2.5e-27 125.6 112 70.5
arahy.Tifrunner.gnm1.ann1.3X9X11 Arachis hypogaea HOM05D006797 ORTHO05D007696 2.5e-27 125.6 112 70.5
Medtr4g094782 Medicago truncatula HOM05D006797 ORTHO05D007696 2.5e-27 125.6 117 70.9
Ciclev10017227m.g Citrus clementina HOM05D006797 ORTHO05D007696 3.3e-27 125.2 115 73.9
Sc24g0002860 Simmondsia chinensis HOM05D006797 ORTHO05D007696 4.3e-27 124.8 116 69.0
TWI38G0311 Tripterygium wilfordii HOM05D006797 ORTHO05D007696 9.6e-27 123.6 113 69.9
EL10Ac7g17249 Beta vulgaris HOM05D006797 ORTHO05D007696 1.3e-26 123.2 118 67.8
Prupe.4G119300 Prunus persica HOM05D006797 ORTHO05D007696 1.6e-26 122.9 120 68.3
RcHm_v2.0_Chr5g0021541 Rosa chinensis HOM05D006797 ORTHO05D007696 1.6e-26 122.9 123 68.3
Manes.03G071800 Manihot esculenta HOM05D006797 ORTHO05D007696 2.8e-26 122.1 119 68.9
Ah.15g091850 Amaranthus hybridus HOM05D006797 ORTHO05D007696 6.3e-26 120.9 117 68.4
Phvul.002G187600 Phaseolus vulgaris HOM05D006797 ORTHO05D007696 3.1e-25 118.6 116 67.2
SGA_v2.0_scaffold60G20810 Striga asiatica HOM05D006797 ORTHO05D007696 9.0e-25 117.1 116 63.8
MD10G1226000 Malus domestica HOM05D006797 ORTHO05D007696 1.5e-24 116.3 120 65.8
CSS0049260 Camellia sinensis var. sinensis HOM05D006797 ORTHO05D007696 4.5e-24 114.8 126 62.7
Hund23985 Selenicereus undatus HOM05D006797 ORTHO05D007696 4.5e-24 114.8 116 66.4
Atru.chr10.261 Acer truncatum HOM05D006797 ORTHO05D007696 7.6e-24 114.0 121 64.5
VMungo0251G2933 Vigna mungo HOM05D006797 ORTHO05D007696 7.6e-24 114.0 102 73.5
Oeu036765.2 Olea europaea HOM05D006797 ORTHO05D007696 1.3e-23 113.2 130 61.5
SGA_v2.0_scaffold44G16576 Striga asiatica HOM05D001006 ORTHO05D000868 2.2e-23 112.5 116 64.7
PGR042G0784 Punica granatum HOM05D006797 ORTHO05D007696 2.9e-23 112.1 126 60.3
CDE05G1867 Ceratophyllum demersum HOM05D006797 ORTHO05D007696 5.0e-23 111.3 119 61.3
Ca_18220_v3 Cicer arietinum L. HOM05D006797 ORTHO05D007696 5.0e-23 111.3 122 65.6
SalBow3G3973 Salvia bowleyana HOM05D006797 ORTHO05D007696 5.0e-23 111.3 111 68.5
Cc09_g04790 Coffea canephora HOM05D006797 ORTHO05D007696 6.5e-23 110.9 118 65.3
Migut.F00519 Erythranthe guttata HOM05D006797 ORTHO05D007696 8.4e-23 110.5 117 65.8
TPR.G27392 Trifolium pratense HOM05D006797 ORTHO05D007696 1.4e-22 109.8 117 65.0
Psat7g087040 Pisum sativum HOM05D006797 ORTHO05D007696 2.5e-22 109.0 118 61.9
MSTRG.8842 Avicennia marina HOM05D006797 ORTHO05D007696 4.2e-22 108.2 121 62.8
Duzib211G0055 Durio zibethinus HOM05D006797 ORTHO05D007696 4.2e-22 108.2 127 63.8
Hma1.2p1_1220F.1_g268030 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 1.2e-21 106.7 123 59.3
Cpa.g.sc30.90 Carica papaya HOM05D006797 ORTHO05D007696 3.5e-21 105.1 105 69.5
Rhsim13G0134800 Rhododendron simsii HOM05D006797 ORTHO05D007696 6.1e-21 104.4 127 54.3
Lsat_1_v5_gn_3_103300 Lactuca sativa HOM05D006797 ORTHO05D007696 7.9e-21 104.0 108 65.7
CANSAT35G2044 Cannabis sativa HOM05D006797 ORTHO05D007696 1.3e-20 103.2 124 57.3
Dinv03172 Davidia involucrata HOM05D006797 ORTHO05D007696 6.7e-20 100.9 126 57.9
Gorai.010G130400 Gossypium raimondii HOM05D006797 ORTHO05D007696 1.5e-19 99.8 126 56.3
FAN21G4013 Fragaria x ananassa HOM05D006797 ORTHO05D007696 1.9e-19 99.4 120 60.8
FAN25G1182 Fragaria x ananassa HOM05D006797 ORTHO05D007696 1.9e-19 99.4 120 60.8
HanXRQChr12g0377351 Helianthus annuus HOM05D006797 ORTHO05D007696 1.9e-19 99.4 111 59.5
FAN16G2513 Fragaria x ananassa HOM05D006797 ORTHO05D007696 2.5e-19 99.0 120 60.8
Gohir.A06G110200 Gossypium hirsutum HOM05D006797 ORTHO05D007696 3.3e-19 98.6 124 57.3
Gohir.D06G114100 Gossypium hirsutum HOM05D006797 ORTHO05D007696 4.3e-19 98.2 126 55.6
Solyc02g082020.3 Solanum lycopersicum HOM05D006797 ORTHO05D007696 4.3e-19 98.2 114 64.0
Nn1g05854 Nelumbo nucifera HOM05D006797 ORTHO05D007696 7.4e-19 97.4 116 57.8
THA.LOC104812696 Tarenaya hassleriana HOM05D006797 ORTHO05D007696 7.4e-19 97.4 130 57.7
FvH4_3g13200 Fragaria vesca HOM05D006797 ORTHO05D007696 9.7e-19 97.1 120 60.0
FAN11G3985 Fragaria x ananassa HOM05D006797 ORTHO05D007696 9.7e-19 97.1 120 60.0
CAN.G809.30 Capsicum annuum HOM05D006797 ORTHO05D007696 1.3e-18 96.7 114 63.2
ECA248G3234 Erigeron canadensis HOM05D006797 ORTHO05D007696 1.6e-18 96.3 111 58.6
Lj4g0013366 Lotus japonicus HOM05D006797 ORTHO05D007696 1.6e-18 96.3 118 59.3
Peaxi162Scf00036g02019 Petunia axillaris HOM05D006797 ORTHO05D007696 2.2e-18 95.9 113 62.8
PSO675G1942 Papaver somniferum HOM05D006797 ORTHO05D007696 2.8e-18 95.5 119 53.8
Sopen02g026660 Solanum pennellii HOM05D006797 ORTHO05D007696 2.8e-18 95.5 114 62.3
Potri.003G155400 Populus trichocarpa HOM05D006797 ORTHO05D007696 3.7e-18 95.1 126 54.8
PGSC0003DMG400007337 Solanum tuberosum HOM05D006797 ORTHO05D007696 3.7e-18 95.1 114 62.3
AUR62042807 Chenopodium quinoa HOM05D006797 ORTHO05D007696 4.8e-18 94.7 115 57.4
Dinv02379 Davidia involucrata HOM05D006797 ORTHO05D007696 4.8e-18 94.7 114 57.9
Nitab4.5_0003902g0030 Nicotiana tabacum HOM05D006797 ORTHO05D007696 4.8e-18 94.7 114 61.4
PSO541G4265 Papaver somniferum HOM05D006797 ORTHO05D007696 8.2e-18 94.0 119 52.9
Nitab4.5_0000632g0020 Nicotiana tabacum HOM05D006797 ORTHO05D007696 1.1e-17 93.6 114 61.4
COL.COLO4_25039 Corchorus olitorius HOM05D006797 ORTHO05D007696 1.2e-16 90.1 101 65.3
Zm00001eb430680 Zea mays HOM05D006797 ORTHO05D007696 1.5e-16 89.7 118 52.5
Zm00001eb442340 Zea mays HOM05D006797 ORTHO05D007696 1.5e-16 89.7 93 59.1
Haze_24216 Corylus avellana HOM05D006797 ORTHO05D007696 2.0e-16 89.4 134 52.2
ATR0763G022 Amborella trichopoda HOM05D006797 ORTHO05D007696 5.9e-16 87.8 108 55.6
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 7.7e-16 87.4 124 50.8
HPP92_013198 Vanilla planifolia HOM05D006797 ORTHO05D007696 1.7e-15 86.3 126 55.6
DCAR_001265 Daucus carota HOM05D006797 ORTHO05D007696 2.2e-15 85.9 99 61.6
Zm00001eb071100 Zea mays HOM05D006797 ORTHO05D007696 2.9e-15 85.5 118 51.7
MBI18_g20922_MAGBIO Magnolia biondii HOM05D006797 ORTHO05D007696 3.8e-15 85.1 99 58.6
A09p35270 Brassica napus HOM05D006797 ORTHO05D007696 6.5e-15 84.3 117 56.4
Sp1g26780 Schrenkiella parvula HOM05D006797 ORTHO05D007696 6.5e-15 84.3 122 54.1
AL1G45170 Arabidopsis lyrata HOM05D006797 ORTHO05D007696 1.1e-14 83.6 123 52.8
BcaB04g18200 Brassica carinata HOM05D006797 ORTHO05D007696 1.1e-14 83.6 124 53.2
BcaC07g37796 Brassica carinata HOM05D006797 ORTHO05D007696 1.1e-14 83.6 119 56.3
A08p10910 Brassica napus HOM05D006797 ORTHO05D007696 1.1e-14 83.6 119 56.3
BraA08t33088Z Brassica rapa HOM05D006797 ORTHO05D007696 1.1e-14 83.6 121 55.4
A07p09570 Brassica napus HOM05D006797 ORTHO05D007696 1.4e-14 83.2 115 56.5
BraA07t28751Z Brassica rapa HOM05D006797 ORTHO05D007696 1.4e-14 83.2 115 56.5
AT1G30880 Arabidopsis thaliana HOM05D006797 ORTHO05D007696 1.9e-14 82.8 123 52.8
Carub.0001s2922 Capsella rubella HOM05D006797 ORTHO05D007696 1.9e-14 82.8 121 52.9
Aa31LG6G12300 Aethionema arabicum HOM05D006797 ORTHO05D007696 2.5e-14 82.4 122 53.3
Thhalv10009126m.g Eutrema salsugineum HOM05D006797 ORTHO05D007696 7.2e-14 80.9 122 52.5
BcaB07g32754 Brassica carinata HOM05D006797 ORTHO05D007696 3.6e-13 78.6 122 52.5
Os04g0611300 Oryza sativa ssp. japonica HOM05D006797 ORTHO05D007696 3.6e-13 78.6 113 51.3
Sabra03G0112800 Salix brachista HOM05D006797 ORTHO05D007696 3.6e-13 78.6 55 78.2
BolC8t48187H Brassica oleracea HOM05D006797 ORTHO05D007696 4.6e-13 78.2 121 52.1
unitig_37.g11921 Utricularia gibba HOM05D006797 ORTHO05D007696 4.6e-13 78.2 71 64.8
BolC7t41975H Brassica oleracea HOM05D006797 ORTHO05D007696 6.1e-13 77.8 122 51.6
BraA09t39054Z Brassica rapa HOM05D006797 ORTHO05D007696 6.1e-13 77.8 123 52.0
CARHR030370 Cardamine hirsuta HOM05D006797 ORTHO05D007696 1.0e-12 77.0 124 50.8
vmacro03563 Vaccinium macrocarpon HOM05D006797 ORTHO05D007696 1.0e-12 77.0 69 69.6
C07p14730 Brassica napus HOM05D006797 ORTHO05D007696 1.4e-12 76.6 122 50.8
BcaC05g27127 Brassica carinata HOM05D006797 ORTHO05D007696 3.9e-12 75.1 122 51.6
C05p30120 Brassica napus HOM05D006797 ORTHO05D007696 3.9e-12 75.1 122 51.6
Thecc.02G002300 Theobroma cacao HOM05D006797 ORTHO05D007696 5.1e-12 74.7 71 67.6
Haze_05201 Corylus avellana HOM05D000001 ORTHO05D010268 1.1e-11 73.6 48 85.4
Haze_15747 Corylus avellana HOM05D006797 ORTHO05D007696 1.1e-11 73.6 48 85.4
Hma1.2p1_0747F.1_g212490 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 3.7e-10 68.6 68 61.8
BolC5t31749H Brassica oleracea HOM05D006797 ORTHO05D007696 6.3e-10 67.8 128 48.4
Cfa002056 Carpinus fangiana HOM05D006797 ORTHO05D007696 3.1e-09 65.5 158 39.9
Oeu008734.1 Olea europaea HOM05D016541 ORTHO05D007696 4.5e-08 61.6 76 57.9
Mapoly0051s0054 Marchantia polymorpha HOM05D006797 ORTHO05D007696 1.3e-07 60.1 126 41.3
Pp3c24_14860 Physcomitrium patens HOM05D006797 ORTHO05D007696 3.8e-07 58.5 115 43.5
Cfa001151 Carpinus fangiana HOM05D000071 ORTHO05D000029 6.5e-07 57.8 160 34.4
SMO167G0044 Selaginella moellendorffii HOM05D006797 ORTHO05D007696 4.2e-06 55.1 119 39.5
PGSC0003DMG400034320 Solanum tuberosum HOM05D001388 ORTHO05D001234 5.5e-06 54.7 51 70.6


User provided reference genes

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