Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011406 Sechium edule HOM05D007152 ORTHO05D008912 8.9e-76 287.3 203 100.0
ClCG06G004920 Citrullus lanatus HOM05D007152 ORTHO05D008912 1.4e-60 236.9 204 67.6
MELO3C021305.2 Cucumis melo HOM05D007152 ORTHO05D008912 1.8e-60 236.5 204 69.1
CsaV3_6G022730 Cucumis sativus L. HOM05D007152 ORTHO05D008912 1.2e-51 207.2 190 65.8
Prupe.1G130200 Prunus persica HOM05D007152 ORTHO05D008912 1.7e-34 150.2 205 66.3
MD16G1162700 Malus domestica HOM05D007152 ORTHO05D008912 1.9e-33 146.7 205 65.4
Sed0010921 Sechium edule HOM05D007152 ORTHO05D008912 6.7e-31 138.3 193 48.7
Dinv44343 Davidia involucrata HOM05D007152 ORTHO05D008912 1.6e-29 133.7 198 47.0
CANSAT78G0935 Cannabis sativa HOM05D007152 ORTHO05D008912 1.4e-28 130.6 204 51.0
GSVIVG01035097001 Vitis vinifera HOM05D007152 ORTHO05D008912 6.9e-28 128.3 204 50.0
RcHm_v2.0_Chr4g0423591 Rosa chinensis HOM05D007152 ORTHO05D008912 1.2e-27 127.5 206 61.7
Nn6g34202 Nelumbo nucifera HOM05D007152 ORTHO05D008912 1.0e-26 124.4 203 46.3
Gorai.011G193700 Gossypium raimondii HOM05D007152 ORTHO05D008912 2.2e-26 123.2 213 43.2
TWI73G1002 Tripterygium wilfordii HOM05D007152 ORTHO05D008912 5.0e-26 122.1 202 49.5
Gohir.D10G173100 Gossypium hirsutum HOM05D007152 ORTHO05D008912 6.5e-26 121.7 213 42.3
Gohir.A10G167100 Gossypium hirsutum HOM05D007152 ORTHO05D008912 1.1e-25 120.9 214 42.5
Thecc.04G290300 Theobroma cacao HOM05D007152 ORTHO05D008912 1.1e-25 120.9 217 43.3
TAR362G0707 Trochodendron aralioides HOM05D007152 ORTHO05D008912 2.5e-25 119.8 206 46.6
Haze_01149 Corylus avellana HOM05D007152 ORTHO05D008912 5.5e-25 118.6 203 49.3
CiPaw.01G144800 Carya illinoinensis HOM05D007152 ORTHO05D008912 9.3e-25 117.9 205 50.2
Hma1.2p1_1352F.1_g277500 Hydrangea macrophylla HOM05D007152 ORTHO05D008912 9.3e-25 117.9 198 47.0
Duzib212G0417 Durio zibethinus HOM05D007152 ORTHO05D008912 1.2e-24 117.5 216 44.4
FvH4_4g18790 Fragaria vesca HOM05D007152 ORTHO05D008912 3.5e-24 115.9 208 62.0
FAN12G2857 Fragaria x ananassa HOM05D007152 ORTHO05D008912 3.5e-24 115.9 208 62.0
PGSC0003DMG400017287 Solanum tuberosum HOM05D007152 ORTHO05D008912 6.1e-24 115.2 210 41.9
FAN12G4239 Fragaria x ananassa HOM05D007152 ORTHO05D008912 7.9e-24 114.8 208 61.5
QL06p010801 Quercus lobata HOM05D007152 ORTHO05D008912 2.3e-23 113.2 203 42.9
CiPaw.02G079300 Carya illinoinensis HOM05D007152 ORTHO05D008912 3.0e-23 112.8 203 52.2
CSS0046950 Camellia sinensis var. sinensis HOM05D007152 ORTHO05D008912 1.1e-22 110.9 196 59.7
CSS0044056 Camellia sinensis var. sinensis HOM05D007152 ORTHO05D008912 4.3e-22 109.0 196 59.2
FAN07G1963 Fragaria x ananassa HOM05D007152 ORTHO05D008912 1.3e-21 107.5 207 58.5
FAN17G1647 Fragaria x ananassa HOM05D007152 ORTHO05D008912 1.6e-21 107.1 206 62.1
Manes.03G199400 Manihot esculenta HOM05D007152 ORTHO05D008912 2.2e-21 106.7 205 43.9
MBI18_g04558_MAGBIO Magnolia biondii HOM05D000387 ORTHO05D008912 2.8e-21 106.3 199 39.7
Nitab4.5_0007965g0010 Nicotiana tabacum HOM05D007152 ORTHO05D008912 2.8e-21 106.3 203 39.4
Cc03_g01440 Coffea canephora HOM05D007152 ORTHO05D008912 6.3e-21 105.1 204 49.0
COL.COLO4_13806 Corchorus olitorius HOM05D007152 ORTHO05D008912 5.3e-20 102.1 210 36.7
THA.LOC104818902 Tarenaya hassleriana HOM05D007152 ORTHO05D008912 2.0e-19 100.1 209 36.4
Cfa015435 Carpinus fangiana HOM05D007152 ORTHO05D008912 7.7e-19 98.2 203 51.2
Sc13g0003130 Simmondsia chinensis HOM05D007152 ORTHO05D008912 1.7e-18 97.1 156 57.1
Duzib151G0510 Durio zibethinus HOM05D007152 ORTHO05D008912 2.2e-18 96.7 211 40.8
Potri.010G006600 Populus trichocarpa HOM05D007152 ORTHO05D008912 6.5e-18 95.1 76 64.5
Peaxi162Scf00065g10111 Petunia axillaris HOM05D007152 ORTHO05D008912 1.9e-17 93.6 213 42.7
Solyc07g055660.2 Solanum lycopersicum HOM05D007152 ORTHO05D008912 5.5e-17 92.0 205 33.7
CARHR081420 Cardamine hirsuta HOM05D007152 ORTHO05D008912 9.4e-17 91.3 210 40.5
PGR004G0508 Punica granatum HOM05D007152 ORTHO05D008912 1.2e-16 90.9 205 35.1
Migut.G00085 Erythranthe guttata HOM05D007152 ORTHO05D008912 1.6e-16 90.5 72 54.2
Migut.G00124 Erythranthe guttata HOM05D007152 ORTHO05D008912 1.6e-16 90.5 72 54.2
Phvul.003G108000 Phaseolus vulgaris HOM05D007152 ORTHO05D008912 1.6e-16 90.5 201 41.3
VMungo1215G1115 Vigna mungo HOM05D007152 ORTHO05D008912 1.6e-16 90.5 201 40.3
Manes.15G009801 Manihot esculenta HOM05D007152 ORTHO05D008912 2.7e-16 89.7 72 59.7
AT3G06780 Arabidopsis thaliana HOM05D007152 ORTHO05D008912 4.6e-16 89.0 210 45.7
Actinidia14275 Actinidia chinensis HOM05D007152 ORTHO05D008912 7.9e-16 88.2 193 40.9
AL3G17910 Arabidopsis lyrata HOM05D007152 ORTHO05D008912 7.9e-16 88.2 211 46.0
Sabra10G0005500 Salix brachista HOM05D007152 ORTHO05D008912 1.0e-15 87.8 76 59.2
SalBow2G3473 Salvia bowleyana HOM05D007152 ORTHO05D008912 1.4e-15 87.4 205 31.7
Potri.008G211000 Populus trichocarpa HOM05D007152 ORTHO05D008912 1.8e-15 87.0 73 61.6
Carub.0003s0633 Capsella rubella HOM05D007152 ORTHO05D008912 2.3e-15 86.7 211 41.7
Dinv29715 Davidia involucrata HOM05D007152 ORTHO05D008912 2.3e-15 86.7 162 61.7
Sopen07g029030 Solanum pennellii HOM05D007152 ORTHO05D008912 3.9e-15 85.9 210 39.0
Atru.chr4.2916 Acer truncatum HOM05D007152 ORTHO05D008912 5.1e-15 85.5 210 41.0
Aa31LG5G17390 Aethionema arabicum HOM05D007152 ORTHO05D008912 5.1e-15 85.5 208 38.0
Nitab4.5_0000306g0360 Nicotiana tabacum HOM05D007152 ORTHO05D008912 2.5e-14 83.2 200 45.5
Actinidia13384 Actinidia chinensis HOM05D007152 ORTHO05D008912 1.3e-13 80.9 200 47.5
Nn2g11629 Nelumbo nucifera HOM05D000191 ORTHO05D000122 1.3e-13 80.9 187 35.3
C05p60530 Brassica napus HOM05D007152 ORTHO05D008912 1.7e-13 80.5 208 37.0
BolC5t34707H Brassica oleracea HOM05D007152 ORTHO05D008912 1.7e-13 80.5 208 37.0
Nn4g25735 Nelumbo nucifera HOM05D007152 ORTHO05D008912 1.7e-13 80.5 162 42.6
Thhalv10022432m.g Eutrema salsugineum HOM05D007152 ORTHO05D008912 4.8e-13 79.0 210 40.0
Lsat_1_v5_gn_3_21801 Lactuca sativa HOM05D007152 ORTHO05D008912 6.3e-13 78.6 67 47.8
Glyma.17G029000 Glycine max HOM05D007152 ORTHO05D008912 8.2e-13 78.2 202 39.1
Medtr4g120400 Medicago truncatula HOM05D007152 ORTHO05D008912 2.4e-12 76.6 150 62.0
Aqoxy2G02883 Aquilegia oxysepala HOM05D007152 ORTHO05D008912 3.1e-12 76.3 160 40.6
Ca_21475_v3 Cicer arietinum L. HOM05D007152 ORTHO05D008912 4.1e-12 75.9 200 49.0
DCAR_027047 Daucus carota HOM05D007152 ORTHO05D008912 6.9e-12 75.1 150 46.0
Eucgr.H03966 Eucalyptus grandis HOM05D007152 ORTHO05D008912 2.0e-11 73.6 77 51.9
Ciclev10006039m.g Citrus clementina HOM05D007152 ORTHO05D008912 7.7e-11 71.6 204 47.5
Lalb_Chr20g0121161 Lupinus albus HOM05D007152 ORTHO05D008912 1.0e-10 71.2 74 52.7
A03p34880 Brassica napus HOM05D007152 ORTHO05D008912 1.7e-10 70.5 63 58.7
Eucgr.B01571 Eucalyptus grandis HOM05D007152 ORTHO05D008912 2.2e-10 70.1 192 39.6
EL10Ac3g06653 Beta vulgaris HOM05D007152 ORTHO05D008912 3.8e-10 69.3 61 57.4
Lj4g0009216 Lotus japonicus HOM05D007152 ORTHO05D008912 6.5e-10 68.6 74 50.0
BNapus_Darmor_BZH_scaffold_117p00080 Brassica napus HOM05D007152 ORTHO05D008912 8.5e-10 68.2 72 54.2
Glyma.07G244800 Glycine max HOM05D007152 ORTHO05D008912 1.4e-09 67.4 201 37.8
Eucgr.G02139 Eucalyptus grandis HOM05D007152 ORTHO05D008912 2.5e-09 66.6 76 48.7
Eucgr.G02132 Eucalyptus grandis HOM05D007152 ORTHO05D008912 3.2e-09 66.2 72 50.0
BraA01t04415Z Brassica rapa HOM05D007152 ORTHO05D008912 4.2e-09 65.9 60 58.3
Sabra08G0151100 Salix brachista HOM05D007152 ORTHO05D008912 4.2e-09 65.9 57 57.9
Ah.04g153700 Amaranthus hybridus HOM05D007152 ORTHO05D008912 5.5e-09 65.5 161 47.8
SGA_v2.0_scaffold18G08363 Striga asiatica HOM05D007152 ORTHO05D008912 9.4e-09 64.7 66 51.5
Sp3g05760 Schrenkiella parvula HOM05D007152 ORTHO05D008912 1.2e-08 64.3 210 37.1
A05p41300 Brassica napus HOM05D007152 ORTHO05D008912 1.6e-08 63.9 208 36.1
BraA05t22853Z Brassica rapa HOM05D007152 ORTHO05D008912 1.6e-08 63.9 208 36.1
Lsat_1_v5_gn_6_76040 Lactuca sativa HOM05D007152 ORTHO05D008912 1.6e-08 63.9 58 50.0
BolC3t16516H Brassica oleracea HOM05D007152 ORTHO05D008912 6.1e-08 62.0 63 54.0
AUR62018060 Chenopodium quinoa HOM05D007152 ORTHO05D008912 7.9e-08 61.6 179 55.9
TPR.G22774 Trifolium pratense HOM05D007152 ORTHO05D008912 7.9e-08 61.6 74 50.0
HanXRQChr07g0199211 Helianthus annuus HOM05D007152 ORTHO05D008912 1.0e-07 61.2 47 53.2
C03p42450 Brassica napus HOM05D007152 ORTHO05D008912 1.8e-07 60.5 63 55.6
ECA246G2204 Erigeron canadensis HOM05D007152 ORTHO05D008912 3.0e-07 59.7 47 55.3
PSO407G0318 Papaver somniferum HOM05D007152 ORTHO05D008912 2.0e-06 57.0 55 50.9
RcHm_v2.0_Chr7g0221621 Rosa chinensis HOM05D007152 ORTHO05D008912 2.6e-06 56.6 50 52.0
Lalb_Chr12g0201151 Lupinus albus HOM05D007152 ORTHO05D008912 5.7e-06 55.5 195 38.5


User provided reference genes

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