Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011388 Sechium edule HOM05D008072 ORTHO05D010204 1.6e-49 199.1 100 100.0
ClCG09G000070 Citrullus lanatus HOM05D008072 ORTHO05D010204 9.6e-31 136.7 113 63.7
CsaV3_7G035400 Cucumis sativus L. HOM05D008072 ORTHO05D010204 4.9e-27 124.4 111 63.1
MELO3C024449.2 Cucumis melo HOM05D008072 ORTHO05D010204 2.4e-26 122.1 113 62.8
Cc04_g02690 Coffea canephora HOM05D008072 ORTHO05D010204 1.6e-14 82.8 111 49.5
Thecc.06G097600 Theobroma cacao HOM05D008072 ORTHO05D010204 2.1e-14 82.4 106 47.2
Cpa.g.c31416 Carica papaya HOM05D008072 ORTHO05D010204 4.8e-14 81.3 103 50.5
QL05p020523 Quercus lobata HOM05D008072 ORTHO05D010204 6.2e-14 80.9 105 44.8
Hma1.2p1_3269F.1_g334750 Hydrangea macrophylla HOM05D008072 ORTHO05D010204 1.1e-13 80.1 105 47.6
Potri.001G188400 Populus trichocarpa HOM05D008072 ORTHO05D010204 2.4e-13 79.0 112 49.1
MD17G1186400 Malus domestica HOM05D008072 ORTHO05D010204 4.0e-13 78.2 114 40.4
Atru.chr1.3499 Acer truncatum HOM05D008072 ORTHO05D010204 5.3e-13 77.8 123 43.9
Oeu060494.1 Olea europaea HOM05D008072 ORTHO05D010204 5.3e-13 77.8 108 48.1
PGR102G0255 Punica granatum HOM05D008072 ORTHO05D010204 1.5e-12 76.3 117 41.0
Manes.04G132700 Manihot esculenta HOM05D008072 ORTHO05D010204 2.0e-12 75.9 115 45.2
Peaxi162Scf00038g00843 Petunia axillaris HOM05D008072 ORTHO05D010204 2.0e-12 75.9 115 45.2
PGSC0003DMG400002533 Solanum tuberosum HOM05D008072 ORTHO05D010204 2.0e-12 75.9 113 44.2
GSVIVG01017012001 Vitis vinifera HOM05D008072 ORTHO05D010204 1.3e-11 73.2 111 40.5
Prupe.3G061100 Prunus persica HOM05D008072 ORTHO05D010204 1.7e-11 72.8 107 40.2
Glyma.08G202200 Glycine max HOM05D008072 ORTHO05D010204 2.9e-11 72.0 102 43.1
SalBow7G3462 Salvia bowleyana HOM05D008072 ORTHO05D010204 3.8e-11 71.6 113 42.5
Actinidia09003 Actinidia chinensis HOM05D008072 ORTHO05D010204 4.9e-11 71.2 107 37.4
Aqoxy7G01464 Aquilegia oxysepala HOM05D008072 ORTHO05D010204 6.5e-11 70.9 110 35.5
TWI18G1284 Tripterygium wilfordii HOM05D008072 ORTHO05D010204 6.5e-11 70.9 122 39.3
CSS0040470 Camellia sinensis var. sinensis HOM05D008072 ORTHO05D010204 8.4e-11 70.5 112 42.9
TAR626G1017 Trochodendron aralioides HOM05D008072 ORTHO05D010204 8.4e-11 70.5 105 40.0
Lj3g0001751 Lotus japonicus HOM05D008072 ORTHO05D010204 1.1e-10 70.1 112 43.8
TPR.G35014 Trifolium pratense HOM05D008072 ORTHO05D010204 1.4e-10 69.7 111 39.6
Ciclev10026797m.g Citrus clementina HOM05D008072 ORTHO05D010204 1.9e-10 69.3 116 42.2
Dinv37992 Davidia involucrata HOM05D008072 ORTHO05D010204 1.9e-10 69.3 109 42.2
Phvul.010G146400 Phaseolus vulgaris HOM05D008072 ORTHO05D010204 1.9e-10 69.3 110 41.8
Sopen03g039710 Solanum pennellii HOM05D008072 ORTHO05D010204 1.9e-10 69.3 110 43.6
VMungo0331G2041 Vigna mungo HOM05D008072 ORTHO05D010204 1.9e-10 69.3 110 43.6
Lalb_Chr04g0262911 Lupinus albus HOM05D008072 ORTHO05D010204 2.5e-10 68.9 100 42.0
Haze_15831 Corylus avellana HOM05D008072 ORTHO05D010204 3.2e-10 68.6 45 68.9
RcHm_v2.0_Chr2g0140071 Rosa chinensis HOM05D008072 ORTHO05D010204 3.2e-10 68.6 113 39.8
Glyma.07G016900 Glycine max HOM05D008072 ORTHO05D010204 4.2e-10 68.2 109 43.1
FAN05G4246 Fragaria x ananassa HOM05D008072 ORTHO05D010204 5.5e-10 67.8 117 41.0
Sabra01G0152600 Salix brachista HOM05D008072 ORTHO05D010204 9.3e-10 67.0 111 37.8
MD09G1205700 Malus domestica HOM05D008072 ORTHO05D010204 1.2e-09 66.6 98 40.8
Sc10g0007210 Simmondsia chinensis HOM05D008072 ORTHO05D010204 1.2e-09 66.6 111 38.7
FvH4_6g32180 Fragaria vesca HOM05D008072 ORTHO05D010204 2.1e-09 65.9 117 41.0
FAN02G2294 Fragaria x ananassa HOM05D008072 ORTHO05D010204 2.1e-09 65.9 117 41.0
FAN09G3706 Fragaria x ananassa HOM05D008072 ORTHO05D010204 2.1e-09 65.9 117 41.0
CiPaw.02G146800 Carya illinoinensis HOM05D008072 ORTHO05D010204 2.7e-09 65.5 72 45.8
FAN14G4057 Fragaria x ananassa HOM05D008072 ORTHO05D010204 3.5e-09 65.1 117 41.0
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 6.0e-09 64.3 106 42.5
Nn2g11609 Nelumbo nucifera HOM05D008072 ORTHO05D010204 1.0e-08 63.5 109 33.9
Duzib192G0771 Durio zibethinus HOM05D008072 ORTHO05D010204 1.8e-08 62.8 120 39.2
CANSAT56G4142 Cannabis sativa HOM05D008072 ORTHO05D010204 3.0e-08 62.0 116 36.2
EL10Ac9g22100 Beta vulgaris HOM05D008072 ORTHO05D010204 3.9e-08 61.6 111 35.1
Gohir.D03G059100 Gossypium hirsutum HOM05D008072 ORTHO05D010204 3.9e-08 61.6 95 40.0
Rhsim12G0202400 Rhododendron simsii HOM05D008072 ORTHO05D010204 3.9e-08 61.6 105 40.0
Gorai.003G063000 Gossypium raimondii HOM05D008072 ORTHO05D010204 5.1e-08 61.2 44 63.6
Psat4g197480 Pisum sativum HOM05D008072 ORTHO05D010204 1.1e-07 60.1 111 36.9
Hund31378 Selenicereus undatus HOM05D008072 ORTHO05D010204 1.5e-07 59.7 103 39.8
arahy.Tifrunner.gnm1.ann1.UX9EW1 Arachis hypogaea HOM05D008072 ORTHO05D010204 2.5e-07 58.9 98 40.8
Gohir.A02G118500 Gossypium hirsutum HOM05D008072 ORTHO05D010204 2.5e-07 58.9 95 38.9
arahy.Tifrunner.gnm1.ann1.XD1M86 Arachis hypogaea HOM05D008072 ORTHO05D010204 3.3e-07 58.5 97 41.2
Hund06655 Selenicereus undatus HOM05D008072 ORTHO05D010204 3.3e-07 58.5 103 39.8
Nitab4.5_0001755g0100 Nicotiana tabacum HOM05D008072 ORTHO05D010204 4.3e-07 58.2 70 45.7
HanXRQChr16g0501221 Helianthus annuus HOM05D008072 ORTHO05D010204 5.7e-07 57.8 101 38.6
Medtr8g013930 Medicago truncatula HOM05D008072 ORTHO05D010204 9.6e-07 57.0 108 36.1
SGA_v2.0_scaffold4G02017 Striga asiatica HOM05D008072 ORTHO05D010204 1.3e-06 56.6 117 34.2
Nn8g39117 Nelumbo nucifera HOM05D008072 ORTHO05D010204 2.1e-06 55.8 99 31.3
MSTRG.9481 Avicennia marina HOM05D008072 ORTHO05D010204 6.2e-06 54.3 109 37.6


User provided reference genes

Program Settings