Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 8.0e-205 716.8 358 100.0
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 3.8e-170 601.7 328 91.2
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 3.5e-168 595.1 329 88.8
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 8.7e-167 590.5 329 88.4
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 2.1e-144 516.2 320 77.8
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 8.7e-143 510.8 320 76.6
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 2.5e-142 509.2 330 75.5
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 4.5e-139 498.4 323 74.0
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 1.9e-137 493.0 320 73.4
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 3.2e-137 492.3 320 73.1
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 2.1e-136 489.6 322 75.2
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.7e-136 489.2 324 72.8
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 2.7e-136 489.2 322 74.8
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 2.7e-136 489.2 320 72.5
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 4.6e-136 488.4 320 73.1
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 1.8e-135 486.5 320 73.8
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 6.7e-135 484.6 322 74.2
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 6.7e-135 484.6 323 74.0
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.1e-134 483.8 320 72.5
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.9e-134 483.0 320 70.6
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.5e-134 482.6 320 70.6
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 2.8e-133 479.2 320 69.7
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 3.7e-133 478.8 324 70.7
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 8.2e-133 477.6 320 71.2
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 1.1e-132 477.2 322 73.0
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 1.4e-132 476.9 322 71.7
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 1.4e-132 476.9 320 71.6
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.4e-132 476.9 320 70.0
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 2.4e-132 476.1 322 73.6
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 2.4e-132 476.1 321 71.7
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 6.9e-132 474.6 316 72.5
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 2.6e-131 472.6 320 70.3
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 4.5e-131 471.9 320 70.6
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.0e-130 470.7 322 71.1
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 1.7e-130 469.9 322 70.8
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 1.7e-130 469.9 320 70.9
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 2.9e-130 469.2 320 69.7
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 2.9e-130 469.2 324 69.8
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 1.4e-129 466.8 320 70.3
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 7.2e-129 464.5 320 70.9
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 9.4e-129 464.2 321 71.0
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.6e-128 463.4 324 71.9
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 1.6e-128 463.4 320 70.6
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 3.6e-128 462.2 317 68.5
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 3.6e-128 462.2 320 69.1
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 6.1e-128 461.5 322 69.9
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 6.1e-128 461.5 322 70.2
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 2.3e-127 459.5 322 69.3
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 2.3e-127 459.5 323 70.0
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.3e-127 459.5 323 70.0
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.3e-127 459.5 323 69.7
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 5.1e-127 458.4 320 67.8
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 5.1e-127 458.4 320 70.3
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.1e-126 457.2 321 69.8
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 1.5e-126 456.8 320 69.1
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 9.7e-126 454.1 322 68.9
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 1.3e-125 453.8 367 62.9
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 1.7e-125 453.4 322 67.4
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 2.2e-125 453.0 322 68.0
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 3.7e-125 452.2 324 67.6
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 3.7e-125 452.2 320 68.4
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 1.4e-124 450.3 322 67.4
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.8e-124 449.9 325 67.4
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 3.1e-124 449.1 322 68.3
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 4.1e-124 448.7 324 67.0
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 6.9e-124 448.0 318 68.6
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.2e-123 447.2 324 66.4
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 1.2e-123 447.2 324 66.7
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 3.4e-123 445.7 326 67.8
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 1.3e-122 443.7 317 65.0
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.3e-122 443.7 320 65.9
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 1.3e-122 443.7 322 69.3
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 8.5e-122 441.0 305 68.2
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 1.1e-121 440.7 320 66.6
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 7.2e-121 438.0 328 63.1
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 9.4e-121 437.6 322 65.5
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 1.2e-120 437.2 322 67.7
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 1.6e-120 436.8 321 65.7
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 2.1e-120 436.4 334 65.3
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 2.1e-120 436.4 323 66.6
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 3.6e-120 435.6 322 67.4
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 8.8e-119 431.0 324 65.7
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 2.2e-117 426.4 264 77.3
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 4.8e-117 425.2 323 64.7
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 6.3e-117 424.9 323 64.1
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 1.8e-116 423.3 321 65.4
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 4.1e-116 422.2 318 65.1
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 5.3e-116 421.8 323 62.8
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 7.0e-116 421.4 302 66.2
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 2.6e-115 419.5 323 62.8
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 3.5e-115 419.1 301 66.4
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 7.7e-115 417.9 323 62.2
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 1.0e-114 417.5 323 61.9
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 2.2e-114 416.4 323 61.6
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 2.9e-114 416.0 323 61.9
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 8.5e-114 414.5 323 61.6
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 1.9e-113 413.3 323 61.3
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 7.2e-113 411.4 323 61.9
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 1.6e-112 410.2 323 61.3
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 3.6e-112 409.1 323 60.7
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 3.6e-112 409.1 277 72.6
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 3.0e-111 406.0 324 61.4
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 3.0e-111 406.0 323 61.0
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 6.3e-109 398.3 325 61.2
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 4.1e-108 395.6 284 68.0
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 1.0e-106 391.0 294 66.3
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 2.2e-106 389.8 413 53.8
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 8.5e-106 387.9 322 59.0
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 3.2e-105 386.0 370 54.3
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 2.7e-104 382.9 255 73.7
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 3.7e-101 372.5 324 57.4
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 1.1e-100 370.9 324 57.1
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.4e-100 370.5 328 56.1
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 1.2e-99 367.5 540 41.5
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 5.0e-98 362.1 322 59.3
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 1.1e-97 360.9 285 62.8
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.2e-96 357.5 323 58.2
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 3.0e-95 352.8 682 35.5
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 7.0e-92 341.7 322 56.8
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 4.5e-91 339.0 262 62.2
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 1.0e-90 337.8 272 63.6
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 2.3e-87 326.6 220 70.0
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 8.3e-85 318.2 301 51.8
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 3.5e-83 312.8 236 64.4
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 7.8e-83 311.6 306 49.0
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 1.3e-82 310.8 305 49.5
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 3.1e-79 299.7 254 57.9
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 2.9e-77 293.1 201 71.6
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 1.1e-73 281.2 305 47.5
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.5e-70 270.8 177 74.6
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 1.0e-66 258.1 221 56.6
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 5.8e-54 215.7 298 38.3
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 1.3e-45 188.0 189 47.1
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 2.8e-32 143.7 96 74.0
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 3.1e-31 140.2 99 67.7
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.0e-30 137.5 93 65.6
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 5.8e-30 136.0 93 65.6
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 2.9e-29 133.7 119 60.5
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 5.5e-28 129.4 99 64.6
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 2.3e-26 124.0 86 72.1
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 1.9e-25 120.9 327 27.8
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 7.4e-25 119.0 75 68.0
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 2.0e-17 94.4 81 53.1
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 3.7e-16 90.1 88 52.3
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 3.8e-13 80.1 79 58.2
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 5.0e-13 79.7 62 69.4
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 3.1e-07 60.5 71 43.7
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 1.5e-06 58.2 75 48.0
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 1.5e-06 58.2 75 48.0
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 1.5e-06 58.2 75 48.0
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.5e-06 56.6 43 60.5


User provided reference genes

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