Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011251 Sechium edule HOM05D006911 ORTHO05D006663 8.4e-38 159.8 80 100.0
MELO3C007147.2 Cucumis melo HOM05D006911 ORTHO05D006663 2.4e-32 141.7 80 87.5
ClCG01G024470 Citrullus lanatus HOM05D006911 ORTHO05D006663 3.4e-31 137.9 80 86.2
CsaV3_6G051600 Cucumis sativus L. HOM05D006911 ORTHO05D006663 1.1e-29 132.9 80 81.2
Sed0023541 Sechium edule HOM05D006911 ORTHO05D006663 3.6e-20 101.3 80 66.2
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 8.0e-12 73.6 57 70.2
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 2.3e-11 72.0 70 52.9
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 5.2e-11 70.9 72 52.8
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 8.8e-11 70.1 79 48.1
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 2.0e-10 68.9 58 58.6
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 7.5e-10 67.0 58 56.9
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 9.7e-10 66.6 62 58.1
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 3.7e-09 64.7 85 43.5
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 4.1e-08 61.2 63 50.8
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 5.3e-08 60.8 68 51.5
BcaC06g31483 Brassica carinata HOM05D010376 ORTHO05D006663 1.6e-07 59.3 63 52.4
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.6e-07 59.3 72 44.4
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 1.6e-07 59.3 41 63.4
RcHm_v2.0_Chr5g0013541 Rosa chinensis HOM05D006911 ORTHO05D006663 2.0e-07 58.9 72 45.8
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.7e-07 58.5 69 44.9
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.7e-07 58.5 55 50.9
C07p29520 Brassica napus HOM05D010376 ORTHO05D006663 3.5e-07 58.2 63 52.4
BolC7t43501H Brassica oleracea HOM05D010376 ORTHO05D006663 3.5e-07 58.2 63 52.4
FAN21G0769 Fragaria x ananassa HOM05D006911 ORTHO05D006663 3.5e-07 58.2 72 45.8
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 3.5e-07 58.2 80 43.8
FvH4_3g05900 Fragaria vesca HOM05D006911 ORTHO05D006663 4.5e-07 57.8 67 44.8
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 4.5e-07 57.8 75 44.0
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 4.5e-07 57.8 75 44.0
Phvul.002G194700 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 4.5e-07 57.8 57 56.1
BcaC03g16844 Brassica carinata HOM05D010376 ORTHO05D006663 5.9e-07 57.4 63 50.8
Glyma.08G083800 Glycine max HOM05D006911 ORTHO05D006663 5.9e-07 57.4 71 52.1
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 5.9e-07 57.4 75 44.0
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 5.9e-07 57.4 68 48.5
RcHm_v2.0_Chr7g0229651 Rosa chinensis HOM05D006911 ORTHO05D006663 5.9e-07 57.4 72 45.8
Prupe.4G077900 Prunus persica HOM05D006911 ORTHO05D006663 7.7e-07 57.0 71 49.3
Thhalv10001093m.g Eutrema salsugineum HOM05D010376 ORTHO05D006663 1.0e-06 56.6 63 50.8
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.0e-06 56.6 55 49.1
Nn3g20669 Nelumbo nucifera HOM05D006911 ORTHO05D006663 1.0e-06 56.6 68 44.1
Gorai.010G239100 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.3e-06 56.2 55 50.9
BcaC03g16845 Brassica carinata HOM05D010376 ORTHO05D006663 2.2e-06 55.5 63 49.2
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 2.2e-06 55.5 76 47.4
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 2.9e-06 55.1 63 44.4
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 2.9e-06 55.1 63 44.4
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 2.9e-06 55.1 63 44.4
MD09G1150000 Malus domestica HOM05D006911 ORTHO05D006663 2.9e-06 55.1 76 42.1
BcaB07g30843 Brassica carinata HOM05D010376 ORTHO05D006663 3.8e-06 54.7 69 46.4
A06p46010 Brassica napus HOM05D010376 ORTHO05D006663 3.8e-06 54.7 63 49.2
BraA06t27465Z Brassica rapa HOM05D010376 ORTHO05D006663 3.8e-06 54.7 63 49.2
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 3.8e-06 54.7 60 51.7
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 3.8e-06 54.7 60 51.7
QL08p044828 Quercus lobata HOM05D006911 ORTHO05D006663 3.8e-06 54.7 46 54.3
C02p47270 Brassica napus HOM05D010376 ORTHO05D006663 5.0e-06 54.3 79 43.0
MD05G1287000 Malus domestica HOM05D006911 ORTHO05D006663 5.0e-06 54.3 71 47.9
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 6.5e-06 53.9 68 39.7
CARHR175490 Cardamine hirsuta HOM05D010376 ORTHO05D006663 8.5e-06 53.5 72 48.6


User provided reference genes

Program Settings