Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 0.0e+00 1964.9 1013 100.0
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 0.0e+00 1742.2 1013 86.5
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1722.2 1013 86.0
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1719.9 1013 85.6
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1324.3 1008 67.6
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1316.2 1013 66.1
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1315.1 1007 67.1
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1300.0 1008 66.8
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1296.6 1021 65.5
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1285.8 1013 66.4
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1285.0 1016 64.0
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1274.6 1021 64.8
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1270.8 998 64.6
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1266.5 1027 63.0
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1265.0 1008 64.9
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1263.4 1008 65.1
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1254.6 1009 63.6
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1252.7 1028 64.6
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1251.5 1007 64.6
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1246.9 1028 64.4
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1238.4 1007 63.0
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1238.4 1049 61.0
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1237.2 1029 62.3
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1236.1 1024 64.0
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1229.2 1023 61.7
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1228.8 1016 61.0
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1227.6 990 63.8
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1226.8 1029 63.4
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1225.3 1008 62.2
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1223.8 1012 63.7
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1222.2 1014 63.2
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1221.5 1010 61.8
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 0.0e+00 1207.2 1019 62.7
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 0.0e+00 1201.4 1008 62.8
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 0.0e+00 1201.0 1007 62.3
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 0.0e+00 1196.4 1009 63.4
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1195.3 1014 60.3
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1189.5 1010 62.3
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 0.0e+00 1172.9 1011 60.4
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1163.3 1016 58.8
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 0.0e+00 1160.6 1045 59.4
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 0.0e+00 1157.5 1039 58.9
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 0.0e+00 1154.4 1063 58.2
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 0.0e+00 1153.7 988 60.9
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 0.0e+00 1146.7 895 66.8
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1139.8 1027 57.4
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 0.0e+00 1139.8 1036 58.5
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 0.0e+00 1135.9 1014 58.4
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 0.0e+00 1115.5 1007 57.1
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 0.0e+00 1115.1 1012 57.6
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 0.0e+00 1101.3 1015 56.5
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1097.0 1008 56.7
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 0.0e+00 1095.9 1014 57.6
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 0.0e+00 1087.4 1023 56.6
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 0.0e+00 1086.2 1010 56.6
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 0.0e+00 1084.7 1013 56.9
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 0.0e+00 1081.6 1016 56.7
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 0.0e+00 1081.6 1013 56.9
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 0.0e+00 1078.9 1014 56.8
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 0.0e+00 1078.9 1007 55.9
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 6.2e-311 1070.8 1016 55.1
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 2.0e-309 1065.8 1020 56.3
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 5.8e-309 1064.3 1020 56.1
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 7.6e-309 1063.9 1019 55.9
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 2.2e-308 1062.4 895 61.1
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 3.8e-308 1061.6 1018 55.7
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 2.4e-307 1058.9 839 66.5
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 1.2e-306 1056.6 1020 54.7
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 2.1e-306 1055.8 1019 54.5
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 3.5e-306 1055.0 1011 54.4
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 1.0e-305 1053.5 1030 55.5
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 3.3e-304 1048.5 1007 55.0
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 5.6e-304 1047.7 1026 55.2
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 7.3e-304 1047.3 1012 55.7
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 7.3e-304 1047.3 1005 55.0
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 1.3e-303 1046.6 1001 55.7
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 1.3e-303 1046.6 1007 55.3
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 6.2e-303 1044.3 1040 54.9
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 7.8e-298 1027.3 1052 52.0
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 3.0e-297 1025.4 1023 54.4
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 1.9e-296 1022.7 1017 54.7
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 7.3e-296 1020.8 961 55.2
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 1.1e-288 996.9 1009 52.3
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 1.1e-288 996.9 1034 52.8
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 5.1e-281 971.5 1009 52.8
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 5.1e-281 971.5 975 52.5
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 4.3e-280 968.4 1019 51.7
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 1.2e-274 950.3 778 64.1
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 1.3e-271 940.3 735 65.3
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 1.3e-263 913.7 999 48.9
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 3.8e-260 902.1 1011 49.9
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 8.5e-260 901.0 1012 49.2
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 1.3e-252 877.1 1023 48.4
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 7.3e-195 685.3 687 55.2
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 2.2e-191 673.7 661 55.1
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.9e-190 670.6 661 54.9
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 8.1e-178 628.6 628 55.1
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 4.0e-177 626.3 553 60.6
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 7.1e-174 615.5 580 54.3
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 5.5e-166 589.3 1078 34.9
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 4.6e-149 533.1 1096 33.5
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 6.9e-145 519.2 531 54.4
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 5.2e-132 476.5 953 35.0
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 1.2e-131 475.3 348 67.8
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 3.2e-97 360.9 380 50.0
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 5.4e-97 360.1 431 45.0
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 9.2e-97 359.4 1148 27.8
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 1.6e-96 358.6 330 59.7
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 7.3e-94 349.7 1131 27.9
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 1.3e-74 285.8 352 46.3
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 2.2e-66 258.5 258 54.3
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 2.0e-51 208.8 559 32.4
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 1.0e-47 196.4 217 49.8
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.5e-46 192.6 146 61.6
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 3.8e-42 177.9 149 63.1
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 2.2e-37 162.2 230 45.7
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 1.9e-33 149.1 149 47.0
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 2.0e-27 129.0 171 46.8
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 7.7e-27 127.1 423 28.6
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.9e-25 122.5 103 56.3
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 9.4e-25 120.2 222 36.9
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 3.3e-22 111.7 79 63.3
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 6.3e-21 107.5 158 41.1
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.0e-19 102.4 67 67.2
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.0e-18 100.1 67 65.7
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 1.3e-18 99.8 218 35.3
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 1.6e-16 92.8 97 44.3
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 2.1e-16 92.4 128 39.8
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 5.2e-15 87.8 104 48.1
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 2.8e-13 82.0 58 63.8
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 2.8e-13 82.0 58 63.8
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 8.2e-13 80.5 62 59.7
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 7.0e-12 77.4 149 40.3
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 1.0e-10 73.6 50 64.0
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 1.3e-10 73.2 233 28.3
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 8.5e-10 70.5 62 54.8
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 2.0e-06 59.3 33 78.8
Actinidia19388 Actinidia chinensis HOM05D005223 ORTHO05D006449 4.4e-06 58.2 57 50.9
MD00G1179800 Malus domestica HOM05D005223 ORTHO05D006449 4.4e-06 58.2 52 53.8


User provided reference genes

Program Settings