Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 5.7e-138 494.2 241 100.0
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 2.1e-108 396.0 246 80.1
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 6.6e-102 374.4 237 79.3
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 1.2e-100 370.2 232 78.9
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 1.9e-93 346.3 241 73.9
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 3.6e-92 342.0 241 72.6
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 4.0e-91 338.6 241 72.2
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 4.0e-91 338.6 241 72.2
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 2.9e-89 332.4 240 72.1
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 1.4e-88 330.1 241 71.4
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 2.4e-88 329.3 242 72.7
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 3.2e-88 328.9 241 72.2
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 7.1e-88 327.8 242 70.7
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 1.2e-87 327.0 211 79.1
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.7e-87 325.9 241 70.5
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 4.6e-87 325.1 240 71.7
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 1.0e-86 323.9 239 72.4
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 1.3e-86 323.6 244 70.9
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 1.3e-86 323.6 244 72.1
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 1.3e-86 323.6 242 69.8
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 1.7e-86 323.2 246 70.7
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 6.6e-86 321.2 244 70.9
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 8.6e-86 320.9 242 69.8
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 1.5e-85 320.1 243 72.4
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 2.5e-85 319.3 240 70.4
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 5.6e-85 318.2 242 68.2
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 9.5e-85 317.4 243 67.9
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 2.1e-84 316.2 242 69.4
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 8.1e-84 314.3 250 68.0
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 1.8e-83 313.2 242 69.8
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 1.8e-83 313.2 257 66.9
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 4.0e-83 312.0 245 68.6
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.0e-83 312.0 245 68.6
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.0e-83 312.0 245 68.6
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 6.8e-83 311.2 244 69.3
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 1.2e-82 310.5 239 69.0
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.2e-82 310.5 243 67.9
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 1.2e-82 310.5 247 67.6
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 2.0e-82 309.7 244 67.2
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 2.6e-82 309.3 243 67.5
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 2.6e-82 309.3 243 67.5
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 3.4e-82 308.9 246 68.7
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 4.4e-82 308.5 242 66.9
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 4.4e-82 308.5 243 67.5
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 5.8e-82 308.1 227 70.5
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 7.6e-82 307.8 240 67.5
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 9.9e-82 307.4 241 68.0
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 9.9e-82 307.4 243 66.7
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 3.7e-81 305.4 243 66.7
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.1e-80 303.9 244 64.8
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 1.4e-80 303.5 242 65.3
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 2.4e-80 302.8 242 66.5
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 4.1e-80 302.0 241 67.6
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 4.1e-80 302.0 246 66.3
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 4.1e-80 302.0 247 66.4
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 7.1e-80 301.2 242 65.3
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 1.6e-79 300.1 217 70.0
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 2.1e-79 299.7 251 63.7
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 3.5e-79 298.9 234 65.4
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 4.6e-79 298.5 234 65.4
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 7.8e-79 297.7 238 65.1
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 1.0e-78 297.4 253 64.8
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.7e-78 296.6 199 72.9
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 1.7e-78 296.6 241 65.6
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 2.3e-78 296.2 241 64.7
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 3.0e-78 295.8 188 77.1
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 5.1e-78 295.0 240 64.6
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 8.6e-78 294.3 195 76.4
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 2.5e-77 292.7 243 64.6
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 1.6e-76 290.0 246 63.8
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.1e-76 289.7 193 74.1
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 3.6e-76 288.9 246 64.2
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 3.6e-76 288.9 218 67.9
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 4.7e-76 288.5 243 64.2
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 6.2e-76 288.1 255 61.2
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 6.2e-76 288.1 235 65.5
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 1.4e-75 287.0 220 66.8
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 3.1e-75 285.8 193 75.1
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 4.0e-75 285.4 195 75.9
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 5.2e-75 285.0 246 61.0
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 2.0e-74 283.1 193 73.6
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 2.0e-74 283.1 237 62.9
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 5.8e-74 281.6 188 73.9
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 7.6e-74 281.2 191 74.3
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.3e-73 280.4 201 70.1
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 4.9e-73 278.5 242 61.6
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 1.4e-72 276.9 189 73.0
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 1.4e-72 276.9 228 64.5
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 3.2e-72 275.8 237 60.3
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 7.1e-72 274.6 188 71.8
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 9.3e-72 274.2 232 60.8
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 1.6e-71 273.5 243 60.9
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 6.0e-71 271.6 240 59.6
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 1.3e-70 270.4 240 59.6
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 1.3e-70 270.4 240 59.6
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 1.7e-70 270.0 193 72.5
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 5.1e-70 268.5 252 58.3
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 8.7e-70 267.7 251 57.4
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 1.1e-69 267.3 240 58.8
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 1.9e-69 266.5 233 58.4
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.3e-68 263.8 199 66.8
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 1.3e-68 263.8 244 58.6
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 1.6e-68 263.5 202 70.8
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 4.8e-68 261.9 248 58.1
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 8.1e-68 261.2 241 58.1
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 3.1e-67 259.2 250 57.2
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 3.1e-67 259.2 243 57.6
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 9.0e-67 257.7 242 58.3
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 9.0e-67 257.7 242 58.3
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 2.0e-66 256.5 245 56.7
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 1.3e-65 253.8 166 76.5
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 1.4e-64 250.4 189 64.6
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 1.2e-63 247.3 247 55.9
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 4.6e-63 245.4 190 66.3
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 5.3e-59 231.9 199 66.8
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 4.8e-52 208.8 184 60.3
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 4.0e-51 205.7 121 80.2
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 2.9e-49 199.5 121 77.7
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 4.9e-49 198.7 120 78.3
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 3.3e-45 186.0 181 53.0
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 2.8e-44 183.0 161 55.3
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 4.8e-44 182.2 166 59.6
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 1.4e-43 180.6 182 46.7
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 3.8e-41 172.6 111 70.3
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 1.1e-40 171.0 177 48.6
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 9.7e-37 157.9 159 47.2
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 4.5e-34 149.1 226 40.3
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 3.3e-29 132.9 174 36.2
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 2.9e-25 119.8 68 82.4
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 2.4e-19 100.1 151 33.1
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 5.0e-17 92.4 115 52.2
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 3.6e-15 86.3 122 45.9
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 4.7e-15 85.9 207 30.4
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 4.0e-06 56.2 102 42.2


User provided reference genes

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