Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011170 Sechium edule HOM05D001953 ORTHO05D001904 4.0e-35 151.0 82 100.0
ClCG03G007330 Citrullus lanatus HOM05D001953 ORTHO05D001904 2.4e-11 72.0 42 76.2
AUR62036611 Chenopodium quinoa HOM05D001953 ORTHO05D001904 1.2e-10 69.7 44 68.2
AUR62044340 Chenopodium quinoa HOM05D001953 ORTHO05D001904 1.2e-10 69.7 44 68.2
AUR62044500 Chenopodium quinoa HOM05D001953 ORTHO05D001904 1.2e-10 69.7 44 68.2
Ciclev10018023m.g Citrus clementina HOM05D001953 ORTHO05D001904 2.6e-10 68.6 41 68.3
Eucgr.D00412 Eucalyptus grandis HOM05D001953 ORTHO05D001904 4.5e-10 67.8 41 68.3
FAN25G2512 Fragaria x ananassa HOM05D001953 ORTHO05D001904 5.8e-10 67.4 41 68.3
Gorai.010G163400 Gossypium raimondii HOM05D001953 ORTHO05D001904 5.8e-10 67.4 44 63.6
PGR101G0004 Punica granatum HOM05D001953 ORTHO05D001904 5.8e-10 67.4 41 68.3
Migut.M00988 Erythranthe guttata HOM05D001953 ORTHO05D001904 7.6e-10 67.0 42 64.3
FvH4_3g06760 Fragaria vesca HOM05D001953 ORTHO05D001904 7.6e-10 67.0 41 65.9
FAN11G0802 Fragaria x ananassa HOM05D001953 ORTHO05D001904 7.6e-10 67.0 41 65.9
Gohir.D06G140000 Gossypium hirsutum HOM05D001953 ORTHO05D001904 7.6e-10 67.0 41 65.9
Dinv12723 Davidia involucrata HOM05D001953 ORTHO05D001904 1.0e-09 66.6 41 65.9
Peaxi162Scf00958g00014 Petunia axillaris HOM05D001953 ORTHO05D001904 1.3e-09 66.2 41 65.9
Rhsim02G0150200 Rhododendron simsii HOM05D001953 ORTHO05D001904 1.3e-09 66.2 41 65.9
SalBow7G3946 Salvia bowleyana HOM05D001953 ORTHO05D001904 1.3e-09 66.2 41 65.9
SalBow7G4535 Salvia bowleyana HOM05D001953 ORTHO05D001904 1.3e-09 66.2 41 65.9
vmacro10934 Vaccinium macrocarpon HOM05D001953 ORTHO05D001904 1.7e-09 65.9 41 65.9
Atru.chr10.1488 Acer truncatum HOM05D001953 ORTHO05D001904 2.2e-09 65.5 41 61.0
Nitab4.5_0013017g0020 Nicotiana tabacum HOM05D001953 ORTHO05D001904 2.2e-09 65.5 44 61.4
Phvul.006G170000 Phaseolus vulgaris HOM05D001953 ORTHO05D001904 2.2e-09 65.5 41 63.4
Thecc.06G161200 Theobroma cacao HOM05D001953 ORTHO05D001904 2.2e-09 65.5 41 65.9
Gohir.A06G123200 Gossypium hirsutum HOM05D001953 ORTHO05D001904 2.9e-09 65.1 41 63.4
TPR.G4533 Trifolium pratense HOM05D001953 ORTHO05D001904 2.9e-09 65.1 41 63.4
Cfa001067 Carpinus fangiana HOM05D001953 ORTHO05D001904 3.8e-09 64.7 41 63.4
COL.COLO4_22832 Corchorus olitorius HOM05D001953 ORTHO05D001904 3.8e-09 64.7 41 63.4
Medtr2g017440 Medicago truncatula HOM05D001953 ORTHO05D001904 3.8e-09 64.7 41 61.0
RcHm_v2.0_Chr5g0012391 Rosa chinensis HOM05D001953 ORTHO05D001904 3.8e-09 64.7 41 61.0
PGSC0003DMG400027817 Solanum tuberosum HOM05D000012 ORTHO05D001372 3.8e-09 64.7 41 63.4
Ca_00491_v3 Cicer arietinum L. HOM05D001953 ORTHO05D001904 5.0e-09 64.3 41 63.4
Hma1.2p1_0336F.1_g128960 Hydrangea macrophylla HOM05D001953 ORTHO05D001904 5.0e-09 64.3 35 65.7
Lj2A314T78 Lonicera japonica HOM05D001953 ORTHO05D001904 5.0e-09 64.3 41 63.4
CSS0000734 Camellia sinensis var. sinensis HOM05D001953 ORTHO05D001904 8.4e-09 63.5 41 61.0
FAN16G3101 Fragaria x ananassa HOM05D001953 ORTHO05D001904 8.4e-09 63.5 41 65.9
MD10G1271700 Malus domestica HOM05D001953 ORTHO05D001904 8.4e-09 63.5 41 61.0
Nitab4.5_0014978g0010 Nicotiana tabacum HOM05D001953 ORTHO05D001904 8.4e-09 63.5 42 59.5
Peaxi162Scf00780g01021 Petunia axillaris HOM05D001953 ORTHO05D001904 8.4e-09 63.5 44 59.1
Sed0002519 Sechium edule HOM05D001953 ORTHO05D001904 8.4e-09 63.5 41 68.3
Solyc03g005940.4 Solanum lycopersicum HOM05D001953 ORTHO05D001904 8.4e-09 63.5 42 59.5
Sopen03g001950 Solanum pennellii HOM05D001953 ORTHO05D001904 8.4e-09 63.5 42 59.5
MELO3C007184.2 Cucumis melo HOM05D001953 ORTHO05D001904 1.1e-08 63.2 44 65.9
PGSC0003DMG400028445 Solanum tuberosum HOM05D001953 ORTHO05D001904 1.1e-08 63.2 41 65.9
CDE02G0623 Ceratophyllum demersum HOM05D001953 ORTHO05D001904 1.4e-08 62.8 41 58.5
TAR629G0875 Trochodendron aralioides HOM05D001953 ORTHO05D001904 1.4e-08 62.8 41 61.0
MSTRG.7445 Avicennia marina HOM05D001953 ORTHO05D001904 1.9e-08 62.4 41 61.0
Cpa.g.sc17.153 Carica papaya HOM05D001953 ORTHO05D001904 1.9e-08 62.4 41 58.5
Peaxi162Scf01055g00116 Petunia axillaris HOM05D001953 ORTHO05D001904 1.9e-08 62.4 42 57.1
CiPaw.10G098800 Carya illinoinensis HOM05D001953 ORTHO05D001904 2.5e-08 62.0 41 58.5
DCAR_031429 Daucus carota HOM05D001953 ORTHO05D001904 2.5e-08 62.0 41 58.5
Migut.H01400 Erythranthe guttata HOM05D001953 ORTHO05D001904 2.5e-08 62.0 41 63.4
Lj1C1178G5 Lonicera japonica HOM05D001953 ORTHO05D001904 2.5e-08 62.0 46 52.2
Lj6g0020497 Lotus japonicus HOM05D001953 ORTHO05D001904 3.2e-08 61.6 41 58.5
Sc24g0001320 Simmondsia chinensis HOM05D001953 ORTHO05D001904 3.2e-08 61.6 41 61.0
Solyc02g071760.4 Solanum lycopersicum HOM05D001953 ORTHO05D001904 3.2e-08 61.6 41 63.4
Sopen02g020750 Solanum pennellii HOM05D001953 ORTHO05D001904 3.2e-08 61.6 41 63.4
GSVIVG01021299001 Vitis vinifera HOM05D001953 ORTHO05D001904 3.2e-08 61.6 41 58.5
Aqoxy1G01910 Aquilegia oxysepala HOM05D001953 ORTHO05D001904 4.2e-08 61.2 41 56.1
Carub.0001s2789 Capsella rubella HOM05D001953 ORTHO05D001904 4.2e-08 61.2 41 65.9
CAN.G411.6 Capsicum annuum HOM05D001953 ORTHO05D001904 4.2e-08 61.2 43 58.1
Cc02_g16050 Coffea canephora HOM05D001953 ORTHO05D001904 4.2e-08 61.2 41 58.5
ClCG01G024050 Citrullus lanatus HOM05D001953 ORTHO05D001904 5.5e-08 60.8 35 71.4
CsaV3_6G051190 Cucumis sativus L. HOM05D001953 ORTHO05D001904 5.5e-08 60.8 41 63.4
Lsat_1_v5_gn_7_26941 Lactuca sativa HOM05D001953 ORTHO05D001904 5.5e-08 60.8 41 65.9
Nitab4.5_0005453g0020 Nicotiana tabacum HOM05D001953 ORTHO05D001904 5.5e-08 60.8 41 63.4
VMungo0720G0255 Vigna mungo HOM05D001953 ORTHO05D001904 7.1e-08 60.5 41 63.4
CARHR029010 Cardamine hirsuta HOM05D001953 ORTHO05D001904 9.3e-08 60.1 41 63.4
Glyma.13G223700 Glycine max HOM05D001953 ORTHO05D001904 9.3e-08 60.1 41 61.0
Nn6g34425 Nelumbo nucifera HOM05D001953 ORTHO05D001904 9.3e-08 60.1 41 58.5
Aa31LG6G6000 Aethionema arabicum HOM05D001953 ORTHO05D001904 1.2e-07 59.7 41 63.4
ATR0213G020 Amborella trichopoda HOM05D001953 ORTHO05D001904 1.2e-07 59.7 40 62.5
AT1G29680 Arabidopsis thaliana HOM05D001953 ORTHO05D001904 1.2e-07 59.7 41 63.4
EL10Ac8g19857 Beta vulgaris HOM05D001953 ORTHO05D001904 1.2e-07 59.7 40 55.0
BcaB07g32556 Brassica carinata HOM05D001953 ORTHO05D001904 1.2e-07 59.7 41 63.4
CAN.G411.5 Capsicum annuum HOM05D001953 ORTHO05D001904 1.2e-07 59.7 41 58.5
Haze_05443 Corylus avellana HOM05D001953 ORTHO05D001904 1.2e-07 59.7 41 61.0
ECA236G3293 Erigeron canadensis HOM05D001953 ORTHO05D001904 1.2e-07 59.7 41 63.4
Sp1g25560 Schrenkiella parvula HOM05D001953 ORTHO05D001904 1.2e-07 59.7 41 63.4
TWI53G0491 Tripterygium wilfordii HOM05D001953 ORTHO05D001904 1.2e-07 59.7 41 58.5
unitig_0.g938 Utricularia gibba HOM05D001953 ORTHO05D001904 1.2e-07 59.7 41 61.0
EL10Ac8g19858 Beta vulgaris HOM05D001953 ORTHO05D001904 1.6e-07 59.3 44 56.8
HanXRQChr02g0055381 Helianthus annuus HOM05D001953 ORTHO05D001904 1.6e-07 59.3 41 56.1
Oeu040941.1 Olea europaea HOM05D001953 ORTHO05D001904 1.6e-07 59.3 41 56.1
ECA248G2162 Erigeron canadensis HOM05D001953 ORTHO05D001904 2.1e-07 58.9 41 61.0
Migut.M00989 Erythranthe guttata HOM05D001953 ORTHO05D001904 2.1e-07 58.9 42 54.8
Thhalv10009988m.g Eutrema salsugineum HOM05D001953 ORTHO05D001904 2.1e-07 58.9 41 63.4
HanXRQChr04g0112251 Helianthus annuus HOM05D001953 ORTHO05D001904 2.1e-07 58.9 41 58.5
Lj2C314T10 Lonicera japonica HOM05D001953 ORTHO05D001904 2.1e-07 58.9 42 57.1
MBI07_g00480_MAGBIO Magnolia biondii HOM05D001953 ORTHO05D001904 2.1e-07 58.9 41 56.1
Psat1g193720 Pisum sativum HOM05D001953 ORTHO05D001904 2.1e-07 58.9 41 56.1
SEGI_30879 Sequoiadendron giganteum HOM05D001953 ORTHO05D001904 2.1e-07 58.9 42 54.8
Sc17g0005520 Simmondsia chinensis HOM05D001953 ORTHO05D001904 2.1e-07 58.9 41 58.5
SGA_v2.0_scaffold123G33472 Striga asiatica HOM05D001953 ORTHO05D001904 2.1e-07 58.9 41 58.5
AL1G43500 Arabidopsis lyrata HOM05D001953 ORTHO05D001904 2.7e-07 58.5 41 61.0
BcaC05g26986 Brassica carinata HOM05D001953 ORTHO05D001904 2.7e-07 58.5 41 61.0
C05p28460 Brassica napus HOM05D001953 ORTHO05D001904 2.7e-07 58.5 41 61.0
BolC5t31571H Brassica oleracea HOM05D001953 ORTHO05D001904 2.7e-07 58.5 41 61.0
Lsat_1_v5_gn_1_112740 Lactuca sativa HOM05D001953 ORTHO05D001904 2.7e-07 58.5 41 56.1
Lalb_Chr07g0189021 Lupinus albus HOM05D001953 ORTHO05D001904 2.7e-07 58.5 41 58.5
Prupe.4G070200 Prunus persica HOM05D001953 ORTHO05D001904 2.7e-07 58.5 41 53.7
A09p36750 Brassica napus HOM05D001953 ORTHO05D001904 3.5e-07 58.2 41 61.0
BraA09t39192Z Brassica rapa HOM05D001953 ORTHO05D001904 3.5e-07 58.2 41 61.0
CSS0033507 Camellia sinensis var. sinensis HOM05D001953 ORTHO05D001904 3.5e-07 58.2 41 58.5
CANSAT35G1269 Cannabis sativa HOM05D001953 ORTHO05D001904 3.5e-07 58.2 41 61.0
PSO675G2422 Papaver somniferum HOM05D001953 ORTHO05D001904 3.5e-07 58.2 41 53.7
Hund01883 Selenicereus undatus HOM05D001953 ORTHO05D001904 4.6e-07 57.8 45 55.6
Aa31LG6G1600 Aethionema arabicum HOM05D003032 ORTHO05D003456 6.1e-07 57.4 39 61.5
Oeu004268.2 Olea europaea HOM05D001953 ORTHO05D001904 6.1e-07 57.4 36 63.9
SalBow8G1016 Salvia bowleyana HOM05D001953 ORTHO05D001904 6.1e-07 57.4 41 56.1
A03p51610 Brassica napus HOM05D001953 ORTHO05D001904 7.9e-07 57.0 42 59.5
BraA03t14250Z Brassica rapa HOM05D001953 ORTHO05D001904 7.9e-07 57.0 42 59.5
Cc02_g16040 Coffea canephora HOM05D001953 ORTHO05D001904 7.9e-07 57.0 41 53.7
SGA_v2.0_scaffold16G07718 Striga asiatica HOM05D001953 ORTHO05D001904 7.9e-07 57.0 41 58.5
THA.LOC104820627 Tarenaya hassleriana HOM05D001953 ORTHO05D001904 7.9e-07 57.0 41 56.1
arahy.Tifrunner.gnm1.ann1.S82CNL Arachis hypogaea HOM05D001953 ORTHO05D001904 1.0e-06 56.6 41 56.1
BcaC06g31527 Brassica carinata HOM05D001953 ORTHO05D001904 1.0e-06 56.6 41 58.5
BcaC06g31528 Brassica carinata HOM05D001953 ORTHO05D001904 1.0e-06 56.6 41 58.5
BcaC06g31529 Brassica carinata HOM05D001953 ORTHO05D001904 1.0e-06 56.6 41 58.5
Carub.0008s0232 Capsella rubella HOM05D001953 ORTHO05D001904 1.0e-06 56.6 41 58.5
Lsat_1_v5_gn_7_26920 Lactuca sativa HOM05D001953 ORTHO05D001904 1.0e-06 56.6 42 54.8
Manes.15G115300 Manihot esculenta HOM05D001953 ORTHO05D001904 1.0e-06 56.6 41 53.7
Sp2g10580 Schrenkiella parvula HOM05D001953 ORTHO05D001904 1.0e-06 56.6 41 58.5
AL8G12960 Arabidopsis lyrata HOM05D001953 ORTHO05D001904 1.3e-06 56.2 41 56.1
arahy.Tifrunner.gnm1.ann1.1FZ4R6 Arachis hypogaea HOM05D001953 ORTHO05D001904 1.3e-06 56.2 42 54.8
Dinv32318 Davidia involucrata HOM05D001953 ORTHO05D001904 1.3e-06 56.2 41 53.7
HanXRQChr15g0472271 Helianthus annuus HOM05D001953 ORTHO05D001904 1.3e-06 56.2 42 54.8
Hund21458 Selenicereus undatus HOM05D001953 ORTHO05D001904 1.3e-06 56.2 41 56.1
TAR627G0273 Trochodendron aralioides HOM05D001953 ORTHO05D001904 1.3e-06 56.2 42 54.8
CSS0001520 Camellia sinensis var. sinensis HOM05D001953 ORTHO05D001904 1.8e-06 55.8 41 56.1
CARHR176280 Cardamine hirsuta HOM05D001953 ORTHO05D001904 1.8e-06 55.8 41 58.5
PSO675G0397 Papaver somniferum HOM05D001953 ORTHO05D001904 1.8e-06 55.8 41 53.7
Solyc02g071770.3 Solanum lycopersicum HOM05D001953 ORTHO05D001904 1.8e-06 55.8 41 56.1
PGSC0003DMG400028447 Solanum tuberosum HOM05D001953 ORTHO05D001904 1.8e-06 55.8 43 53.5
BcaC06g34411 Brassica carinata HOM05D001953 ORTHO05D001904 2.3e-06 55.5 41 56.1
A06p46450 Brassica napus HOM05D001953 ORTHO05D001904 2.3e-06 55.5 41 56.1
C07p28800 Brassica napus HOM05D001953 ORTHO05D001904 2.3e-06 55.5 41 56.1
BolC7t43416H Brassica oleracea HOM05D001953 ORTHO05D001904 2.3e-06 55.5 41 56.1
BraA06t27518Z Brassica rapa HOM05D001953 ORTHO05D001904 2.3e-06 55.5 41 56.1
Carub.0007s2227 Capsella rubella HOM05D001953 ORTHO05D001904 2.3e-06 55.5 41 56.1
SMO367G0134 Selaginella moellendorffii HOM05D001953 ORTHO05D001904 2.3e-06 55.5 44 52.3
Thhalv10001190m.g Eutrema salsugineum HOM05D001953 ORTHO05D001904 3.9e-06 54.7 41 58.5
Peaxi162Scf00958g00512 Petunia axillaris HOM05D001953 ORTHO05D001904 3.9e-06 54.7 33 60.6
Pp3c6_9820 Physcomitrium patens HOM05D001953 ORTHO05D001904 3.9e-06 54.7 41 53.7
Sopen02g020760 Solanum pennellii HOM05D001953 ORTHO05D001904 3.9e-06 54.7 41 53.7
vmacro03997 Vaccinium macrocarpon HOM05D001953 ORTHO05D001904 3.9e-06 54.7 41 51.2
AT5G45690 Arabidopsis thaliana HOM05D001953 ORTHO05D001904 5.1e-06 54.3 41 56.1
arahy.Tifrunner.gnm1.ann1.4ED2BY Arachis hypogaea HOM05D001953 ORTHO05D001904 5.1e-06 54.3 41 53.7
arahy.Tifrunner.gnm1.ann1.DCJ783 Arachis hypogaea HOM05D001953 ORTHO05D001904 5.1e-06 54.3 41 53.7
Nitab4.5_0002507g0080 Nicotiana tabacum HOM05D001953 ORTHO05D001904 5.1e-06 54.3 34 52.9
Glyma.15G088300 Glycine max HOM05D001953 ORTHO05D001904 6.7e-06 53.9 41 53.7
Pp3c25_4290 Physcomitrium patens HOM05D001953 ORTHO05D001904 6.7e-06 53.9 37 51.4
Thhalv10027129m.g Eutrema salsugineum HOM05D001953 ORTHO05D001904 8.7e-06 53.5 41 53.7
Sp7g17630 Schrenkiella parvula HOM05D001953 ORTHO05D001904 8.7e-06 53.5 41 53.7
HPP92_007775 Vanilla planifolia HOM05D001953 ORTHO05D001904 8.7e-06 53.5 41 48.8


User provided reference genes

Program Settings