Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011128 Sechium edule HOM05D006875 ORTHO05D008416 1.4e-87 326.2 169 100.0
CsaV3_3G030390 Cucumis sativus L. HOM05D006875 ORTHO05D008416 1.8e-66 256.1 169 80.5
MELO3C022766.2 Cucumis melo HOM05D006875 ORTHO05D008416 5.9e-65 251.1 169 79.3
ClCG07G002300 Citrullus lanatus HOM05D006875 ORTHO05D008416 5.0e-56 221.5 139 82.0
CiPaw.12G070200 Carya illinoinensis HOM05D006875 ORTHO05D008416 3.6e-46 188.7 174 63.2
Lalb_Chr05g0215561 Lupinus albus HOM05D006875 ORTHO05D008416 2.0e-41 172.9 170 64.1
Lalb_Chr16g0380861 Lupinus albus HOM05D006875 ORTHO05D008416 1.0e-40 170.6 171 64.3
Duzib205G1866 Durio zibethinus HOM05D006875 ORTHO05D008416 1.5e-39 166.8 173 61.3
Prupe.5G024300 Prunus persica HOM05D006875 ORTHO05D008416 1.5e-39 166.8 171 61.4
CSS0027486 Camellia sinensis var. sinensis HOM05D006875 ORTHO05D008416 2.1e-38 162.9 184 56.0
Actinidia18144 Actinidia chinensis HOM05D006875 ORTHO05D008416 2.8e-38 162.5 178 57.9
Actinidia14761 Actinidia chinensis HOM05D006875 ORTHO05D008416 4.7e-38 161.8 177 55.4
Potri.001G133600 Populus trichocarpa HOM05D006875 ORTHO05D008416 4.7e-38 161.8 176 58.0
Cfa012555 Carpinus fangiana HOM05D006875 ORTHO05D008416 6.1e-38 161.4 171 60.2
arahy.Tifrunner.gnm1.ann1.7H2E39 Arachis hypogaea HOM05D006875 ORTHO05D008416 1.0e-37 160.6 173 59.0
arahy.Tifrunner.gnm1.ann1.J2I619 Arachis hypogaea HOM05D006875 ORTHO05D008416 1.0e-37 160.6 173 59.0
Dinv29039 Davidia involucrata HOM05D006875 ORTHO05D008416 2.3e-37 159.5 172 57.0
Solyc06g066190.3 Solanum lycopersicum HOM05D006875 ORTHO05D008416 2.6e-36 156.0 177 55.9
Sopen06g024670 Solanum pennellii HOM05D006875 ORTHO05D008416 4.4e-36 155.2 176 54.5
PGSC0003DMG400020470 Solanum tuberosum HOM05D006875 ORTHO05D008416 4.4e-36 155.2 179 55.9
Duzib068G0693 Durio zibethinus HOM05D006875 ORTHO05D008416 5.7e-36 154.8 170 55.3
Medtr5g027470 Medicago truncatula HOM05D006875 ORTHO05D008416 9.8e-36 154.1 169 58.6
Peaxi162Scf00185g01627 Petunia axillaris HOM05D006875 ORTHO05D008416 1.3e-35 153.7 177 56.5
TPR.G9090 Trifolium pratense HOM05D006875 ORTHO05D008416 1.3e-35 153.7 170 54.7
Ca_25148_v3 Cicer arietinum L. HOM05D006875 ORTHO05D008416 2.2e-35 152.9 170 58.2
RcHm_v2.0_Chr7g0212891 Rosa chinensis HOM05D006875 ORTHO05D008416 2.2e-35 152.9 176 57.4
Nitab4.5_0000109g0180 Nicotiana tabacum HOM05D006875 ORTHO05D008416 2.8e-35 152.5 182 53.3
VMungo1215G2146 Vigna mungo HOM05D006875 ORTHO05D008416 4.9e-35 151.8 169 59.2
Phvul.002G132700 Phaseolus vulgaris HOM05D006875 ORTHO05D008416 1.4e-34 150.2 166 60.8
Gohir.D08G173100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 1.8e-34 149.8 168 57.1
Cc08_g04080 Coffea canephora HOM05D006875 ORTHO05D008416 7.0e-34 147.9 178 50.6
Glyma.01G009800 Glycine max HOM05D006875 ORTHO05D008416 9.2e-34 147.5 167 58.1
Nitab4.5_0005761g0030 Nicotiana tabacum HOM05D006875 ORTHO05D008416 5.9e-33 144.8 193 50.8
MSTRG.13901 Avicennia marina HOM05D006875 ORTHO05D008416 2.9e-32 142.5 184 50.5
Glyma.09G211300 Glycine max HOM05D006875 ORTHO05D008416 5.0e-32 141.7 167 57.5
GSVIVG01011544001 Vitis vinifera HOM05D006875 ORTHO05D008416 1.1e-31 140.6 145 60.0
Hund14386 Selenicereus undatus HOM05D006875 ORTHO05D008416 5.6e-31 138.3 180 52.2
SalBow4G1271 Salvia bowleyana HOM05D006875 ORTHO05D008416 7.3e-31 137.9 174 51.7
A06p46520 Brassica napus HOM05D006875 ORTHO05D008416 9.5e-31 137.5 173 51.4
BraA06t27526Z Brassica rapa HOM05D006875 ORTHO05D008416 9.5e-31 137.5 173 51.4
THA.LOC104806179 Tarenaya hassleriana HOM05D006875 ORTHO05D008416 1.2e-30 137.1 181 49.7
CDE05G0418 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 2.8e-30 136.0 169 50.9
Sabra01G0103300 Salix brachista HOM05D006875 ORTHO05D008416 4.7e-30 135.2 216 46.8
BolC7t43404H Brassica oleracea HOM05D006875 ORTHO05D008416 8.0e-30 134.4 175 49.7
Migut.E01333 Erythranthe guttata HOM05D006875 ORTHO05D008416 8.0e-30 134.4 180 48.3
Eucgr.D02619 Eucalyptus grandis HOM05D006875 ORTHO05D008416 1.0e-29 134.0 174 54.0
BcaC06g34424 Brassica carinata HOM05D006875 ORTHO05D008416 1.8e-29 133.3 173 49.7
C07p28660 Brassica napus HOM05D006875 ORTHO05D008416 1.8e-29 133.3 173 49.7
Thhalv10001052m.g Eutrema salsugineum HOM05D006875 ORTHO05D008416 1.8e-29 133.3 174 50.0
TAR629G1490 Trochodendron aralioides HOM05D006875 ORTHO05D008416 1.8e-29 133.3 169 49.7
Hma1.2p1_0979F.1_g243510 Hydrangea macrophylla HOM05D006875 ORTHO05D008416 2.3e-29 132.9 177 49.7
AL8G13090 Arabidopsis lyrata HOM05D006875 ORTHO05D008416 3.1e-29 132.5 174 49.4
Sp2g10480 Schrenkiella parvula HOM05D006875 ORTHO05D008416 3.1e-29 132.5 177 48.6
EL10Ac5g11986 Beta vulgaris HOM05D006875 ORTHO05D008416 4.0e-29 132.1 174 50.6
Potri.003G099900 Populus trichocarpa HOM05D006875 ORTHO05D008416 4.0e-29 132.1 176 52.8
Thecc.03G314400 Theobroma cacao HOM05D006875 ORTHO05D008416 4.0e-29 132.1 170 53.5
AT5G45590 Arabidopsis thaliana HOM05D006875 ORTHO05D008416 6.8e-29 131.3 176 49.4
Carub.0008s0244 Capsella rubella HOM05D006875 ORTHO05D008416 6.8e-29 131.3 175 48.6
Sc01g0006090 Simmondsia chinensis HOM05D006875 ORTHO05D008416 2.0e-28 129.8 185 45.9
Lj2g0021598 Lotus japonicus HOM05D006875 ORTHO05D008416 2.6e-28 129.4 101 73.3
BcaC03g16779 Brassica carinata HOM05D006875 ORTHO05D008416 4.4e-28 128.6 173 48.6
BolC2t10706H Brassica oleracea HOM05D006875 ORTHO05D008416 4.4e-28 128.6 173 48.6
SGA_v2.0_scaffold144G35866 Striga asiatica HOM05D006875 ORTHO05D008416 5.8e-28 128.3 172 48.8
CARHR176440 Cardamine hirsuta HOM05D006875 ORTHO05D008416 9.8e-28 127.5 176 49.4
FAN04G1681 Fragaria x ananassa HOM05D006875 ORTHO05D008416 9.8e-28 127.5 170 50.0
Nn1g01960 Nelumbo nucifera HOM05D006875 ORTHO05D008416 9.8e-28 127.5 169 49.1
HanXRQChr16g0510981 Helianthus annuus HOM05D006875 ORTHO05D008416 1.3e-27 127.1 172 49.4
BcaC06g31539 Brassica carinata HOM05D006875 ORTHO05D008416 1.7e-27 126.7 173 48.6
Atru.chr6.1576 Acer truncatum HOM05D006875 ORTHO05D008416 2.2e-27 126.3 179 48.6
Aa31LG9G7450 Aethionema arabicum HOM05D006875 ORTHO05D008416 3.7e-27 125.6 173 48.0
FAN13G1224 Fragaria x ananassa HOM05D006875 ORTHO05D008416 3.7e-27 125.6 170 50.0
TWI23G0606 Tripterygium wilfordii HOM05D006875 ORTHO05D008416 3.7e-27 125.6 175 50.3
Ah.12g055650 Amaranthus hybridus HOM05D006875 ORTHO05D008416 4.9e-27 125.2 172 48.8
CANSAT21G2454 Cannabis sativa HOM05D006875 ORTHO05D008416 6.4e-27 124.8 169 50.9
Oeu044464.1 Olea europaea HOM05D006875 ORTHO05D008416 6.4e-27 124.8 95 71.6
FAN08G3065 Fragaria x ananassa HOM05D006875 ORTHO05D008416 8.3e-27 124.4 170 51.2
FvH4_5g23590 Fragaria vesca HOM05D006875 ORTHO05D008416 1.1e-26 124.0 170 50.0
FAN18G3946 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.1e-26 124.0 170 50.0
Psat2g139680 Pisum sativum HOM05D006875 ORTHO05D008416 1.1e-26 124.0 140 57.1
FAN18G3512 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.4e-26 123.6 170 50.0
C02p46480 Brassica napus HOM05D006875 ORTHO05D008416 3.2e-26 122.5 173 47.4
Gohir.A08G152100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 5.4e-26 121.7 167 49.1
Manes.17G011100 Manihot esculenta HOM05D006875 ORTHO05D008416 9.2e-26 120.9 179 50.3
PSO063G1678 Papaver somniferum HOM05D006875 ORTHO05D008416 9.2e-26 120.9 166 49.4
vmacro14218 Vaccinium macrocarpon HOM05D006875 ORTHO05D008416 1.2e-25 120.6 250 38.8
Ciclev10002495m.g Citrus clementina HOM05D006875 ORTHO05D008416 2.3e-24 116.3 174 47.1
QL12p000430 Quercus lobata HOM05D006875 ORTHO05D008416 2.3e-24 116.3 146 52.1
Haze_08111 Corylus avellana HOM05D006875 ORTHO05D008416 3.0e-24 115.9 142 53.5
PSO782G2435 Papaver somniferum HOM05D006875 ORTHO05D008416 3.0e-24 115.9 166 48.2
A02p29280 Brassica napus HOM05D006875 ORTHO05D008416 8.6e-24 114.4 80 75.0
BraA02t07958Z Brassica rapa HOM05D006875 ORTHO05D008416 8.6e-24 114.4 80 75.0
Cpa.g.c33846 Carica papaya HOM05D006875 ORTHO05D008416 1.5e-23 113.6 139 51.8
unitig_0.g2213 Utricularia gibba HOM05D006875 ORTHO05D008416 9.5e-23 110.9 91 63.7
Zm00001eb025290 Zea mays HOM05D006875 ORTHO05D008416 2.1e-22 109.8 151 52.3
Aqoxy3G02082 Aquilegia oxysepala HOM05D006875 ORTHO05D008416 3.6e-22 109.0 167 47.9
MD00G1000200 Malus domestica HOM05D006875 ORTHO05D008416 3.6e-22 109.0 172 46.5
Gorai.004G180500 Gossypium raimondii HOM05D006875 ORTHO05D008416 1.4e-21 107.1 163 47.2
Haze_08105 Corylus avellana HOM05D006875 ORTHO05D008416 2.6e-20 102.8 63 85.7
Os10g0579500 Oryza sativa ssp. japonica HOM05D006875 ORTHO05D008416 2.6e-20 102.8 91 63.7
Sabra03G0067900 Salix brachista HOM05D006875 ORTHO05D008416 7.5e-20 101.3 157 43.9
Rhsim07G0136500 Rhododendron simsii HOM05D006875 ORTHO05D008416 3.7e-19 99.0 150 48.0
COL.COLO4_16883 Corchorus olitorius HOM05D006875 ORTHO05D008416 7.3e-15 84.7 55 80.0
Pp3c9_12060 Physcomitrium patens HOM05D006875 ORTHO05D008416 3.6e-14 82.4 81 59.3
CDE11G0569 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 4.7e-14 82.0 152 42.8
Mapoly0025s0027 Marchantia polymorpha HOM05D006875 ORTHO05D008416 4.7e-14 82.0 70 65.7
Lsat_1_v5_gn_3_43041 Lactuca sativa HOM05D006875 ORTHO05D008416 2.3e-13 79.7 190 37.9
PGR031G1815 Punica granatum HOM05D006875 ORTHO05D008416 2.3e-13 79.7 137 44.5
HPP92_025490 Vanilla planifolia HOM05D006875 ORTHO05D008416 4.0e-13 79.0 158 41.8
ATR0829G201 Amborella trichopoda HOM05D006875 ORTHO05D008416 1.5e-12 77.0 120 45.8
AagrBONN_evm.TU.Sc2ySwM_362.254 Anthoceros agrestis HOM05D006875 ORTHO05D008416 9.2e-10 67.8 70 58.6
ECA233G1303 Erigeron canadensis HOM05D000321 ORTHO05D000204 1.2e-09 67.4 66 56.1
MD06G1023100 Malus domestica HOM05D006875 ORTHO05D008416 1.6e-09 67.0 142 39.4
SEGI_22250 Sequoiadendron giganteum HOM05D006875 ORTHO05D008416 3.0e-08 62.8 71 52.1
SHI45156 Sapria himalayana HOM05D006875 ORTHO05D008416 3.9e-08 62.4 76 48.7
RcHm_v2.0_Chr1g0382651 Rosa chinensis HOM05D006875 ORTHO05D008416 1.1e-07 60.8 45 68.9


User provided reference genes

Program Settings