Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 5.3e-60 234.2 120 100.0
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 2.4e-52 208.8 120 88.3
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 6.3e-45 184.1 122 84.4
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 5.1e-39 164.5 153 68.0
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 5.7e-38 161.0 120 68.3
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 5.7e-38 161.0 118 68.6
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.4e-36 156.4 118 68.6
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 5.3e-36 154.5 118 66.9
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 5.3e-36 154.5 118 66.9
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 2.6e-35 152.1 120 69.2
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 3.5e-35 151.8 120 66.7
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 3.5e-35 151.8 118 65.3
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 4.5e-35 151.4 120 67.5
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.0e-34 150.2 118 66.1
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 1.3e-34 149.8 121 67.8
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.3e-34 149.8 120 65.8
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 1.7e-34 149.4 120 68.3
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 1.7e-34 149.4 120 68.3
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 2.9e-34 148.7 120 65.8
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 2.9e-34 148.7 119 64.7
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 2.9e-34 148.7 122 68.0
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 3.8e-34 148.3 120 65.0
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 6.5e-34 147.5 120 69.2
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 3.2e-33 145.2 120 66.7
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 3.2e-33 145.2 115 68.7
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 4.2e-33 144.8 114 68.4
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 5.5e-33 144.4 120 65.0
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 7.2e-33 144.1 120 63.3
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 9.4e-33 143.7 120 64.2
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 9.4e-33 143.7 113 68.1
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 9.4e-33 143.7 120 65.8
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.6e-32 142.9 118 64.4
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 3.6e-32 141.7 120 64.2
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 6.1e-32 141.0 103 68.0
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 8.0e-32 140.6 122 62.3
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 8.0e-32 140.6 120 60.8
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.0e-31 140.2 118 63.6
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 1.0e-31 140.2 122 63.9
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.0e-31 140.2 118 63.6
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.3e-31 139.0 120 63.3
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 3.0e-31 138.7 120 62.5
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 3.0e-31 138.7 119 59.7
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 3.9e-31 138.3 114 66.7
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 5.2e-31 137.9 120 62.5
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 5.2e-31 137.9 120 64.2
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 6.7e-31 137.5 120 62.5
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 6.7e-31 137.5 123 60.2
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 1.1e-30 136.7 75 86.7
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 1.5e-30 136.3 118 60.2
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 2.0e-30 136.0 121 59.5
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 2.6e-30 135.6 123 64.2
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.6e-30 135.6 127 63.8
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 5.7e-30 134.4 120 63.3
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 9.7e-30 133.7 123 62.6
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 9.7e-30 133.7 82 78.0
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 2.2e-29 132.5 86 77.9
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 2.8e-29 132.1 98 68.4
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 2.8e-29 132.1 90 73.3
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 3.7e-29 131.7 80 81.2
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 4.8e-29 131.3 119 61.3
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 4.8e-29 131.3 82 73.2
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 4.8e-29 131.3 122 58.2
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 8.2e-29 130.6 120 60.0
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.1e-28 130.2 126 61.9
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.1e-28 130.2 134 57.5
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 1.1e-28 130.2 87 72.4
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 1.1e-28 130.2 87 72.4
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 1.8e-28 129.4 123 63.4
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 2.4e-28 129.0 77 77.9
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 3.1e-28 128.6 75 82.7
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 5.3e-28 127.9 119 57.1
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 7.0e-28 127.5 113 61.1
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 7.0e-28 127.5 81 76.5
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 2.0e-27 125.9 119 58.8
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 2.0e-27 125.9 90 71.1
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 3.5e-27 125.2 119 58.0
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 4.5e-27 124.8 74 82.4
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 5.9e-27 124.4 73 84.9
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 5.9e-27 124.4 118 60.2
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 5.9e-27 124.4 121 59.5
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 7.7e-27 124.0 113 62.8
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 7.7e-27 124.0 120 62.5
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 1.3e-26 123.2 125 64.8
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 1.3e-26 123.2 125 64.8
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 1.3e-26 123.2 125 64.8
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.3e-26 123.2 120 55.8
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.3e-26 123.2 117 59.0
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 1.7e-26 122.9 126 60.3
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 2.9e-26 122.1 120 57.5
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 3.8e-26 121.7 122 60.7
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 5.0e-26 121.3 113 59.3
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 8.5e-26 120.6 78 74.4
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 1.5e-25 119.8 73 83.6
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 1.5e-25 119.8 73 83.6
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 1.9e-25 119.4 127 59.8
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.9e-25 119.4 66 86.4
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 3.2e-25 118.6 78 73.1
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 3.2e-25 118.6 78 73.1
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 4.2e-25 118.2 120 58.3
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 4.2e-25 118.2 120 56.7
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 4.2e-25 118.2 117 57.3
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 5.5e-25 117.9 118 57.6
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 5.5e-25 117.9 118 57.6
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 5.5e-25 117.9 118 57.6
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 5.5e-25 117.9 120 59.2
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 5.5e-25 117.9 74 79.7
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 7.2e-25 117.5 117 57.3
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 7.2e-25 117.5 117 57.3
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 1.2e-24 116.7 120 53.3
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.2e-24 116.7 82 68.3
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 2.7e-24 115.5 81 74.1
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 2.7e-24 115.5 120 57.5
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 6.1e-24 114.4 117 58.1
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 5.2e-23 111.3 64 81.2
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 8.8e-23 110.5 96 59.4
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 1.2e-22 110.2 64 81.2
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 1.5e-22 109.8 91 61.5
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.5e-22 109.8 66 80.3
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 2.6e-22 109.0 121 53.7
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.7e-22 107.8 111 55.9
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.4e-20 103.2 97 58.8
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 5.3e-20 101.3 73 67.1
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 9.1e-20 100.5 59 79.7
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 9.1e-20 100.5 119 47.9
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 1.6e-19 99.8 75 64.0
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 5.9e-19 97.8 94 56.4
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 6.5e-18 94.4 117 49.6
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.5e-17 92.4 51 84.3
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 3.2e-17 92.0 96 55.2
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 4.2e-17 91.7 54 77.8
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 9.4e-17 90.5 84 59.5
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.2e-14 83.6 97 52.6
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 1.2e-14 83.6 109 45.9
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 5.7e-14 81.3 73 54.8
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 6.3e-13 77.8 137 41.6
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 5.4e-12 74.7 103 43.7
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 4.7e-08 61.6 111 34.2
MCO09G323 Micromonas commoda HOM05D005845 ORTHO05D007067 5.7e-06 54.7 70 40.0


User provided reference genes

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