Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011106 Sechium edule HOM05D004353 ORTHO05D004989 1.4e-130 469.9 295 100.0
ClCG03G006580 Citrullus lanatus HOM05D004353 ORTHO05D004989 9.8e-100 367.5 273 79.9
MELO3C002758.2 Cucumis melo HOM05D004353 ORTHO05D004989 1.6e-89 333.6 281 74.0
CsaV3_1G036770 Cucumis sativus L. HOM05D004353 ORTHO05D004989 1.9e-82 310.1 276 70.7
Sed0022603 Sechium edule HOM05D004353 ORTHO05D004989 7.8e-81 304.7 276 70.3
Prupe.1G205800 Prunus persica HOM05D004353 ORTHO05D004989 1.2e-49 201.1 263 54.8
QL10p054510 Quercus lobata HOM05D004353 ORTHO05D004989 1.2e-49 201.1 266 51.5
QL10p053348 Quercus lobata HOM05D004353 ORTHO05D004989 1.6e-49 200.7 273 50.5
Cfa015265 Carpinus fangiana HOM05D004353 ORTHO05D004989 1.1e-47 194.5 256 43.8
MD08G1231200 Malus domestica HOM05D004353 ORTHO05D004989 8.2e-46 188.3 277 47.3
Gohir.D10G228800 Gossypium hirsutum HOM05D004353 ORTHO05D004989 1.4e-45 187.6 233 48.9
FAN22G0682 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.8e-45 187.2 251 48.6
Eucgr.A01325 Eucalyptus grandis HOM05D004353 ORTHO05D004989 2.4e-45 186.8 242 50.8
FAN07G2673 Fragaria x ananassa HOM05D004353 ORTHO05D004989 2.4e-45 186.8 254 50.0
FAN17G1422 Fragaria x ananassa HOM05D004353 ORTHO05D004989 5.3e-45 185.7 254 50.0
Gohir.A13G222400 Gossypium hirsutum HOM05D004353 ORTHO05D004989 5.3e-45 185.7 264 46.2
Gorai.013G257700 Gossypium raimondii HOM05D004353 ORTHO05D004989 6.9e-45 185.3 262 46.2
Gorai.011G261300 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.0e-44 183.7 264 46.6
PGR031G1729 Punica granatum HOM05D004353 ORTHO05D004989 2.0e-44 183.7 263 49.0
FAN12G3936 Fragaria x ananassa HOM05D004353 ORTHO05D004989 3.4e-44 183.0 254 49.2
Prupe.1G570000 Prunus persica HOM05D004353 ORTHO05D004989 1.3e-43 181.0 211 61.6
FvH4_4g10550 Fragaria vesca HOM05D004353 ORTHO05D004989 1.7e-43 180.6 253 49.0
CiPaw.02G101000 Carya illinoinensis HOM05D004353 ORTHO05D004989 1.1e-42 177.9 214 53.7
FAN12G4128 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.1e-42 177.9 254 48.8
Sc05g0005560 Simmondsia chinensis HOM05D004353 ORTHO05D004989 1.1e-42 177.9 205 55.1
Thecc.09G282100 Theobroma cacao HOM05D004353 ORTHO05D004989 1.1e-42 177.9 229 49.3
RcHm_v2.0_Chr4g0406201 Rosa chinensis HOM05D004353 ORTHO05D004989 4.2e-42 176.0 267 46.4
Gorai.012G140500 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.1e-41 173.7 198 52.5
MD15G1424100 Malus domestica HOM05D004353 ORTHO05D004989 2.7e-41 173.3 277 45.8
Glyma.07G165200 Glycine max HOM05D004353 ORTHO05D004989 4.6e-41 172.6 264 46.2
Gohir.D13G227200 Gossypium hirsutum HOM05D004353 ORTHO05D004989 1.5e-39 167.5 235 48.1
CANSAT54G2783 Cannabis sativa HOM05D004353 ORTHO05D004989 3.7e-38 162.9 212 51.4
Atru.chr6.1925 Acer truncatum HOM05D004353 ORTHO05D004989 8.2e-38 161.8 233 45.1
Glyma.09G118100 Glycine max HOM05D004353 ORTHO05D004989 1.1e-37 161.4 256 48.0
Carub.0004s2616 Capsella rubella HOM05D004353 ORTHO05D004989 2.4e-37 160.2 255 43.5
Lj2g0015848 Lotus japonicus HOM05D004353 ORTHO05D004989 2.4e-37 160.2 279 43.7
CARHR138810 Cardamine hirsuta HOM05D004353 ORTHO05D004989 4.1e-37 159.5 242 43.8
Hma1.2p1_0017F.1_g011670 Hydrangea macrophylla HOM05D004353 ORTHO05D004989 5.3e-37 159.1 259 45.6
Sp4g25730 Schrenkiella parvula HOM05D004353 ORTHO05D004989 5.3e-37 159.1 247 46.6
AT2G43630 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 6.9e-37 158.7 243 44.0
Oeu043896.1 Olea europaea HOM05D004353 ORTHO05D004989 6.9e-37 158.7 231 41.1
THA.LOC104803988 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 9.1e-37 158.3 232 48.3
C04p70590 Brassica napus HOM05D004353 ORTHO05D004989 1.2e-36 157.9 242 47.5
THA.LOC104802322 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 1.5e-36 157.5 250 51.6
BcaC02g07160 Brassica carinata HOM05D004353 ORTHO05D004989 2.0e-36 157.1 247 46.6
A04p32910 Brassica napus HOM05D004353 ORTHO05D004989 2.0e-36 157.1 248 46.4
BraA04t18750Z Brassica rapa HOM05D004353 ORTHO05D004989 2.0e-36 157.1 247 43.7
AL4G42450 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 2.6e-36 156.8 242 42.6
BolC4t28561H Brassica oleracea HOM05D004353 ORTHO05D004989 2.6e-36 156.8 247 46.6
BcaB06g29332 Brassica carinata HOM05D004353 ORTHO05D004989 3.4e-36 156.4 241 46.9
GSVIVG01038129001 Vitis vinifera HOM05D004353 ORTHO05D004989 4.5e-36 156.0 204 53.4
Cpa.g.sc9.354 Carica papaya HOM05D004353 ORTHO05D004989 1.3e-35 154.5 227 46.7
Manes.11G130500 Manihot esculenta HOM05D004353 ORTHO05D004989 1.7e-35 154.1 250 42.0
AUR62025025 Chenopodium quinoa HOM05D004353 ORTHO05D004989 2.9e-35 153.3 193 48.7
Atru.chr4.1388 Acer truncatum HOM05D004353 ORTHO05D004989 5.0e-35 152.5 184 51.6
Thhalv10001554m.g Eutrema salsugineum HOM05D004353 ORTHO05D004989 5.0e-35 152.5 266 40.2
TWI63G0567 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 1.1e-34 151.4 198 46.0
AUR62006505 Chenopodium quinoa HOM05D004353 ORTHO05D004989 1.4e-34 151.0 207 40.1
VMungo1215G1727 Vigna mungo HOM05D004353 ORTHO05D004989 5.5e-34 149.1 264 43.6
Aa31LG1G25350 Aethionema arabicum HOM05D004353 ORTHO05D004989 2.1e-33 147.1 228 42.1
Gorai.012G140700 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.1e-33 147.1 112 60.7
arahy.Tifrunner.gnm1.ann1.ZXP0UV Arachis hypogaea HOM05D004353 ORTHO05D004989 3.6e-33 146.4 212 42.5
Phvul.003G023800 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 7.9e-33 145.2 262 45.4
Ciclev10021938m.g Citrus clementina HOM05D004353 ORTHO05D004989 1.8e-32 144.1 214 44.9
arahy.Tifrunner.gnm1.ann1.WL5XYL Arachis hypogaea HOM05D004353 ORTHO05D004989 3.9e-32 142.9 208 46.6
Lalb_Chr10g0096191 Lupinus albus HOM05D004353 ORTHO05D004989 5.1e-32 142.5 277 46.6
COL.COLO4_19851 Corchorus olitorius HOM05D004353 ORTHO05D004989 6.7e-32 142.1 239 47.7
TAR362G0930 Trochodendron aralioides HOM05D004353 ORTHO05D004989 5.7e-31 139.0 185 52.4
Haze_01374 Corylus avellana HOM05D004353 ORTHO05D004989 1.3e-30 137.9 336 38.1
Potri.006G123800 Populus trichocarpa HOM05D004353 ORTHO05D004989 1.3e-30 137.9 243 40.3
Atru.chr6.1923 Acer truncatum HOM05D004353 ORTHO05D004989 1.7e-30 137.5 120 58.3
Ah.03g147060 Amaranthus hybridus HOM05D004353 ORTHO05D004989 2.8e-30 136.7 192 46.9
RcHm_v2.0_Chr2g0115921 Rosa chinensis HOM05D004353 ORTHO05D004989 6.3e-30 135.6 235 47.2
TAR633G2112 Trochodendron aralioides HOM05D004353 ORTHO05D004989 8.2e-30 135.2 257 42.0
EL10Ac6g15412 Beta vulgaris HOM05D004353 ORTHO05D004989 1.4e-29 134.4 231 51.1
MSTRG.16235 Avicennia marina HOM05D004353 ORTHO05D004989 1.8e-29 134.0 187 51.9
Sabra06G0098000 Salix brachista HOM05D004353 ORTHO05D004989 2.4e-29 133.7 245 38.8
Duzib168G0981 Durio zibethinus HOM05D004353 ORTHO05D004989 1.2e-28 131.3 261 38.3
Sp5g03540 Schrenkiella parvula HOM05D004353 ORTHO05D004989 1.5e-28 131.0 238 44.5
Hund04296 Selenicereus undatus HOM05D004353 ORTHO05D004989 2.0e-28 130.6 188 44.7
MBI08_g25559_MAGBIO Magnolia biondii HOM05D004353 ORTHO05D004989 4.5e-28 129.4 162 54.3
Peaxi162Scf00008g03715 Petunia axillaris HOM05D004353 ORTHO05D004989 5.9e-28 129.0 187 47.6
Cc04_g05110 Coffea canephora HOM05D004353 ORTHO05D004989 1.0e-27 128.3 265 39.6
FAN19G0170 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.7e-27 127.5 241 45.6
Nitab4.5_0000518g0010 Nicotiana tabacum HOM05D004353 ORTHO05D004989 1.7e-27 127.5 233 45.1
Nitab4.5_0000214g0170 Nicotiana tabacum HOM05D004353 ORTHO05D004989 2.9e-27 126.7 222 45.5
Aqoxy3G00280 Aquilegia oxysepala HOM05D004353 ORTHO05D004989 1.1e-26 124.8 184 45.7
CAN.G162.60 Capsicum annuum HOM05D004353 ORTHO05D004989 1.1e-26 124.8 225 46.7
Migut.M00919 Erythranthe guttata HOM05D004353 ORTHO05D004989 1.1e-26 124.8 201 45.8
BcaC07g40471 Brassica carinata HOM05D004353 ORTHO05D004989 1.5e-26 124.4 217 42.9
FAN28G0555 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.2e-25 121.3 228 47.8
Duzib150G0228 Durio zibethinus HOM05D004353 ORTHO05D004989 2.7e-25 120.2 232 39.7
TWI15G0091 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 2.7e-25 120.2 194 43.3
A09p51910 Brassica napus HOM05D004353 ORTHO05D004989 6.1e-25 119.0 207 45.9
BraA09t40627Z Brassica rapa HOM05D004353 ORTHO05D004989 1.0e-24 118.2 207 45.4
Lalb_Chr02g0158251 Lupinus albus HOM05D004353 ORTHO05D004989 1.0e-24 118.2 266 41.7
BcaC07g40494 Brassica carinata HOM05D004353 ORTHO05D004989 8.8e-24 115.2 181 48.6
C08p34630 Brassica napus HOM05D004353 ORTHO05D004989 8.8e-24 115.2 181 48.6
BolC8t51065H Brassica oleracea HOM05D004353 ORTHO05D004989 8.8e-24 115.2 181 48.6
PSO017G5600 Papaver somniferum HOM05D004353 ORTHO05D004989 8.8e-24 115.2 252 40.1
PSO675G4101 Papaver somniferum HOM05D004353 ORTHO05D004989 8.8e-24 115.2 254 41.3
Solyc04g054460.3 Solanum lycopersicum HOM05D004353 ORTHO05D004989 1.1e-23 114.8 189 51.9
HanXRQChr10g0307981 Helianthus annuus HOM05D004353 ORTHO05D004989 2.6e-23 113.6 208 41.3
FvH4_1g21910 Fragaria vesca HOM05D004353 ORTHO05D004989 3.3e-23 113.2 171 49.7
Lalb_Chr22g0353411 Lupinus albus HOM05D004353 ORTHO05D004989 3.3e-23 113.2 218 39.4
Sopen04g024280 Solanum pennellii HOM05D004353 ORTHO05D004989 4.4e-23 112.8 237 45.1
ECA248G0230 Erigeron canadensis HOM05D004353 ORTHO05D004989 5.7e-23 112.5 202 45.0
AT3G59640 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 4.8e-22 109.4 193 47.2
FAN26G0137 Fragaria x ananassa HOM05D004353 ORTHO05D004989 6.3e-22 109.0 166 48.2
Ca_17991_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 8.2e-22 108.6 264 34.5
MSTRG.19791 Avicennia marina HOM05D004353 ORTHO05D004989 1.8e-21 107.5 102 48.0
AL5G41660 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 3.1e-21 106.7 152 53.3
SalBow8G1390 Salvia bowleyana HOM05D004353 ORTHO05D004989 5.3e-21 105.9 279 39.1
Lsat_1_v5_gn_5_149741 Lactuca sativa HOM05D004353 ORTHO05D004989 9.1e-21 105.1 183 44.3
Lalb_Chr21g0317861 Lupinus albus HOM05D004353 ORTHO05D004989 9.1e-21 105.1 226 42.0
DCAR_005473 Daucus carota HOM05D004353 ORTHO05D004989 4.5e-20 102.8 202 45.5
arahy.Tifrunner.gnm1.ann1.I4T7AK Arachis hypogaea HOM05D004353 ORTHO05D004989 7.7e-20 102.1 194 45.4
Nn1g09685 Nelumbo nucifera HOM05D004353 ORTHO05D004989 1.0e-19 101.7 82 56.1
Carub.0005s2635 Capsella rubella HOM05D004353 ORTHO05D004989 1.3e-19 101.3 193 45.6
Psat1g079080 Pisum sativum HOM05D004353 ORTHO05D004989 3.8e-19 99.8 96 51.0
Medtr8g077030 Medicago truncatula HOM05D000149 ORTHO05D004989 5.0e-19 99.4 95 52.6
Nitab4.5_0001095g0110 Nicotiana tabacum HOM05D004353 ORTHO05D004989 5.0e-19 99.4 94 50.0
arahy.Tifrunner.gnm1.ann1.35HMJH Arachis hypogaea HOM05D004353 ORTHO05D004989 1.1e-18 98.2 191 45.0
TPR.G36930 Trifolium pratense HOM05D004353 ORTHO05D004989 1.9e-18 97.4 167 43.7
TPR.G8801 Trifolium pratense HOM05D004353 ORTHO05D004989 1.9e-18 97.4 96 50.0
Ca_02292_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 3.2e-18 96.7 96 49.0
PGSC0003DMG400005514 Solanum tuberosum HOM05D004353 ORTHO05D004989 4.2e-18 96.3 95 50.5
SHI23072 Sapria himalayana HOM05D004353 ORTHO05D004989 1.2e-17 94.7 153 51.0
AUR62039440 Chenopodium quinoa HOM05D004353 ORTHO05D004989 1.6e-17 94.4 66 59.1
Ca_13736_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 1.6e-17 94.4 100 46.0
Medtr1g030860 Medicago truncatula HOM05D004353 ORTHO05D004989 2.7e-17 93.6 258 38.0
ATR0743G161 Amborella trichopoda HOM05D004353 ORTHO05D004989 6.1e-17 92.4 192 40.1
Gorai.013G194600 Gossypium raimondii HOM05D004353 ORTHO05D004989 8.0e-17 92.0 277 32.9
unitig_61.g26169 Utricularia gibba HOM05D004353 ORTHO05D004989 1.0e-16 91.7 216 37.5
Medtr6g012760 Medicago truncatula HOM05D004353 ORTHO05D004989 4.0e-16 89.7 96 46.9
SGA_v2.0_scaffold1G00163 Striga asiatica HOM05D004353 ORTHO05D004989 4.0e-16 89.7 212 34.9
Psat6g042920 Pisum sativum HOM05D004353 ORTHO05D004989 6.8e-16 89.0 181 42.5
C04p04620 Brassica napus HOM05D004353 ORTHO05D004989 3.4e-15 86.7 101 42.6
Phvul.006G120600 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 5.7e-15 85.9 180 41.1
Lj2g0004083 Lotus japonicus HOM05D004353 ORTHO05D004989 9.7e-15 85.1 200 41.0
Os02g0606000 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 1.3e-14 84.7 89 43.8
VMungo0540G0595 Vigna mungo HOM05D004353 ORTHO05D004989 4.8e-14 82.8 180 41.1
Zm00001eb246630 Zea mays HOM05D004353 ORTHO05D004989 6.3e-14 82.4 89 41.6
Zm00001eb184150 Zea mays HOM05D004353 ORTHO05D004989 1.1e-13 81.6 86 47.7
CDE05G3235 Ceratophyllum demersum HOM05D004353 ORTHO05D004989 1.4e-13 81.3 127 50.4
BcaB02g08913 Brassica carinata HOM05D004353 ORTHO05D004989 5.3e-13 79.3 100 42.0
BolC4t22093H Brassica oleracea HOM05D004353 ORTHO05D004989 5.3e-13 79.3 101 41.6
Os04g0493300 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 1.6e-12 77.8 90 44.4
HPP92_005578 Vanilla planifolia HOM05D004353 ORTHO05D004989 5.9e-12 75.9 118 40.7
BcaC02g12375 Brassica carinata HOM05D004353 ORTHO05D004989 3.8e-11 73.2 91 39.6
Glyma.09G032300 Glycine max HOM05D004353 ORTHO05D004989 6.5e-11 72.4 198 39.9
Atru.chr4.262 Acer truncatum HOM05D004353 ORTHO05D004989 1.5e-10 71.2 101 62.4
HPP92_005597 Vanilla planifolia HOM05D004353 ORTHO05D004989 7.2e-10 68.9 97 43.3
Glyma.15G137300 Glycine max HOM05D004353 ORTHO05D004989 2.1e-09 67.4 73 46.6
MD10G1168700 Malus domestica HOM05D004353 ORTHO05D004989 2.3e-08 63.9 120 39.2


User provided reference genes

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