Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 1.6e-169 599.4 299 100.0
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 2.3e-96 356.3 323 62.5
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 6.3e-94 348.2 324 59.3
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 3.1e-93 345.9 324 59.6
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 3.8e-83 312.4 308 58.4
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 2.7e-36 156.8 330 34.5
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 6.0e-36 155.6 331 35.6
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 4.3e-34 149.4 329 36.8
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.1e-32 144.8 337 32.9
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.4e-32 144.4 312 34.6
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.4e-32 144.4 331 33.5
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.4e-32 144.4 336 32.1
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 2.3e-32 143.7 335 31.9
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 8.9e-32 141.7 312 34.3
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 2.6e-31 140.2 336 32.4
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.4e-31 139.4 334 31.7
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 7.5e-31 138.7 317 34.4
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 2.9e-30 136.7 302 34.1
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 4.9e-30 136.0 319 32.6
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 2.4e-29 133.7 330 33.9
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 3.2e-29 133.3 335 32.2
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 1.2e-28 131.3 319 34.2
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 1.6e-28 131.0 311 31.8
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 3.5e-28 129.8 322 34.8
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.3e-27 127.9 297 32.0
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.3e-27 127.9 325 31.4
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.3e-27 127.9 298 31.5
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 1.7e-27 127.5 329 29.5
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 6.6e-27 125.6 325 31.1
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 8.6e-27 125.2 330 29.7
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.1e-26 124.8 313 30.4
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 5.6e-26 122.5 325 29.8
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 7.3e-26 122.1 329 29.8
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 1.6e-25 120.9 329 29.8
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 1.6e-25 120.9 316 33.5
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 6.2e-25 119.0 308 32.1
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 6.2e-25 119.0 327 29.1
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 6.2e-25 119.0 306 30.7
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 6.2e-25 119.0 317 29.3
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 8.1e-25 118.6 309 31.4
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 1.1e-24 118.2 307 30.3
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 1.1e-24 118.2 326 33.4
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.3e-24 117.1 333 28.8
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 8.9e-24 115.2 328 29.3
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.5e-23 114.4 315 33.3
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 2.0e-23 114.0 231 32.9
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 2.6e-23 113.6 323 31.0
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 2.6e-23 113.6 309 32.0
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 3.4e-23 113.2 303 29.7
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 3.4e-23 113.2 311 29.3
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 3.4e-23 113.2 326 29.8
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 4.4e-23 112.8 333 30.6
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 5.8e-23 112.5 312 31.7
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 1.3e-22 111.3 308 30.2
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 6.4e-22 109.0 330 28.5
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 8.3e-22 108.6 323 31.3
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 1.1e-21 108.2 313 30.7
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 1.4e-21 107.8 319 27.6
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 5.4e-21 105.9 307 29.3
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.2e-20 104.8 317 29.3
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.1e-20 104.0 328 28.7
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 2.1e-20 104.0 317 29.3
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 3.5e-20 103.2 311 30.9
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 4.6e-20 102.8 214 32.2
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 4.6e-20 102.8 322 33.5
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 6.0e-20 102.4 320 30.9
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 7.8e-20 102.1 317 29.0
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.0e-19 101.7 320 29.4
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.3e-19 101.3 320 29.4
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 1.3e-19 101.3 325 28.0
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 1.7e-19 100.9 320 27.5
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 1.7e-19 100.9 316 29.4
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 2.3e-19 100.5 289 29.1
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 3.0e-19 100.1 320 30.9
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 5.1e-19 99.4 294 28.6
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 5.1e-19 99.4 293 31.1
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 6.6e-19 99.0 328 28.0
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 6.6e-19 99.0 315 28.9
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 1.1e-18 98.2 322 30.1
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.5e-18 97.8 321 29.6
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 3.3e-18 96.7 320 29.4
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 3.3e-18 96.7 309 31.7
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 2.8e-17 93.6 326 29.4
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.8e-17 93.6 295 27.8
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 3.6e-17 93.2 318 30.8
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 4.7e-17 92.8 323 31.6
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 4.7e-17 92.8 323 31.6
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 8.1e-17 92.0 319 29.8
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 8.1e-17 92.0 322 30.4
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 8.1e-17 92.0 318 30.8
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 8.1e-17 92.0 313 26.5
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.4e-16 91.3 325 30.8
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 1.4e-16 91.3 315 30.8
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 1.4e-16 91.3 315 30.8
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.4e-16 91.3 333 27.0
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.4e-16 91.3 288 28.8
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 1.8e-16 90.9 315 30.8
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 6.8e-16 89.0 319 30.4
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 6.8e-16 89.0 318 30.2
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 8.9e-16 88.6 323 31.0
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 8.9e-16 88.6 323 31.0
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 8.9e-16 88.6 318 29.6
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 1.2e-15 88.2 318 25.8
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 3.4e-15 86.7 313 32.6
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 7.6e-15 85.5 313 31.6
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 2.2e-14 84.0 298 29.9
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 3.8e-14 83.2 259 29.0
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 3.8e-14 83.2 309 29.4
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 4.9e-14 82.8 318 28.6
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 4.9e-14 82.8 323 26.3
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 4.9e-14 82.8 313 25.9
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 8.4e-14 82.0 266 30.8
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.4e-13 81.3 307 30.6
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 2.4e-13 80.5 320 27.8
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 3.2e-13 80.1 307 28.7
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.6e-12 77.8 282 26.6
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.6e-12 77.8 324 27.8
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 3.5e-12 76.6 301 28.2
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 1.3e-11 74.7 292 28.4
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 1.7e-11 74.3 315 27.9
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 1.7e-11 74.3 176 31.2
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 1.7e-11 74.3 317 26.2
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 2.3e-11 73.9 153 33.3
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 3.9e-11 73.2 311 28.6
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 5.1e-11 72.8 307 28.3
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 2.5e-10 70.5 311 28.0
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 9.6e-10 68.6 312 26.0
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.3e-09 68.2 142 32.4
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 1.3e-09 68.2 134 32.8
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 3.6e-09 66.6 283 29.7
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 3.6e-09 66.6 160 31.2
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.8e-09 66.2 259 26.6
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 1.4e-08 64.7 141 29.8
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.4e-08 63.9 143 34.3
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 1.5e-07 61.2 274 28.5
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 3.4e-07 60.1 299 22.7
ECA234G4300 Erigeron canadensis HOM05D004679 ORTHO05D005524 7.6e-07 58.9 100 35.0
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 1.7e-06 57.8 73 42.5
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 1.7e-06 57.8 300 25.0
ATR1125G023 Amborella trichopoda HOM05D004679 ORTHO05D005524 2.2e-06 57.4 288 28.1
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 2.9e-06 57.0 256 27.7
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 3.8e-06 56.6 135 28.9
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 8.4e-06 55.5 263 26.2


User provided reference genes

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