Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 1.6e-89 332.8 175 100.0
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 2.2e-51 206.1 188 68.6
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 1.2e-47 193.7 186 65.1
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 4.1e-45 185.3 126 81.0
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.6e-36 156.8 125 70.4
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 2.0e-36 156.4 125 68.8
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 3.5e-36 155.6 125 71.2
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.5e-36 155.6 125 71.2
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 4.6e-36 155.2 123 70.7
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 5.9e-36 154.8 125 69.6
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.3e-35 153.7 125 70.4
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.7e-35 153.3 123 69.9
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.3e-35 152.9 124 71.0
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 5.0e-35 151.8 124 70.2
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.0e-35 151.8 124 70.2
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.6e-35 151.4 125 68.8
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.6e-35 151.4 124 70.2
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 6.6e-35 151.4 125 69.6
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 8.6e-35 151.0 125 72.0
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 8.6e-35 151.0 121 69.4
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.1e-34 150.6 125 69.6
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.1e-34 150.6 123 69.1
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.1e-34 150.6 125 68.0
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 1.5e-34 150.2 121 68.6
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.9e-34 149.8 124 68.5
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 3.3e-34 149.1 124 67.7
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 5.6e-34 148.3 125 68.0
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 5.6e-34 148.3 125 67.2
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 1.2e-33 147.1 129 68.2
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 2.1e-33 146.4 122 67.2
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 2.8e-33 146.0 124 67.7
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 3.6e-33 145.6 126 66.7
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 3.6e-33 145.6 126 66.7
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.6e-33 145.6 124 67.7
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.6e-33 145.6 124 67.7
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 4.7e-33 145.2 127 63.8
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.7e-33 145.2 124 67.7
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 4.7e-33 145.2 124 67.7
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.4e-32 143.7 124 67.7
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.4e-32 143.7 128 68.0
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 2.3e-32 142.9 124 66.9
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.0e-32 142.1 124 66.9
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 5.2e-32 141.7 127 64.6
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 6.8e-32 141.4 125 65.6
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 8.9e-32 141.0 123 65.9
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 8.9e-32 141.0 154 54.5
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 8.9e-32 141.0 123 65.0
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 8.9e-32 141.0 128 64.8
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 1.2e-31 140.6 128 64.8
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 2.0e-31 139.8 127 66.1
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 2.6e-31 139.4 128 61.7
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 3.4e-31 139.0 127 64.6
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 5.8e-31 138.3 126 62.7
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 7.5e-31 137.9 105 69.5
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 7.5e-31 137.9 122 62.3
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.3e-30 137.1 124 66.9
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 1.3e-30 137.1 125 65.6
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 1.3e-30 137.1 127 63.8
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 1.7e-30 136.7 123 61.8
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 1.7e-30 136.7 125 61.6
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 2.2e-30 136.3 127 64.6
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 2.9e-30 136.0 127 66.9
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 3.7e-30 135.6 126 61.9
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 4.9e-30 135.2 124 62.1
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 6.4e-30 134.8 126 65.1
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 6.4e-30 134.8 160 56.9
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 8.3e-30 134.4 120 62.5
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 8.3e-30 134.4 124 62.9
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.1e-29 134.0 130 61.5
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 1.4e-29 133.7 128 60.2
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 1.4e-29 133.7 129 61.2
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 1.4e-29 133.7 134 61.9
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 3.2e-29 132.5 127 65.4
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 3.2e-29 132.5 127 65.4
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 4.1e-29 132.1 126 61.9
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 1.6e-28 130.2 126 57.9
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 1.6e-28 130.2 125 62.4
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 2.0e-28 129.8 122 59.8
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 3.5e-28 129.0 129 62.0
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 6.0e-28 128.3 94 73.4
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 6.0e-28 128.3 126 62.7
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 7.8e-28 127.9 122 62.3
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 7.8e-28 127.9 127 59.1
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 1.0e-27 127.5 126 57.1
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 1.0e-27 127.5 103 67.0
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 1.7e-27 126.7 125 59.2
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 1.7e-27 126.7 125 59.2
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 2.3e-27 126.3 120 63.3
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 3.0e-27 125.9 120 60.8
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.0e-27 125.2 101 68.3
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 6.6e-27 124.8 121 61.2
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 6.6e-27 124.8 122 59.0
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 6.6e-27 124.8 123 58.5
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 6.6e-27 124.8 129 56.6
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 8.6e-27 124.4 126 61.9
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 8.6e-27 124.4 128 55.5
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 8.6e-27 124.4 131 53.4
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 1.1e-26 124.0 127 59.1
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 1.5e-26 123.6 125 59.2
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 1.5e-26 123.6 120 59.2
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.9e-26 123.2 130 58.5
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 2.5e-26 122.9 127 55.9
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 2.5e-26 122.9 126 61.1
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 3.3e-26 122.5 125 56.8
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 3.3e-26 122.5 125 56.8
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 7.3e-26 121.3 130 57.7
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 1.2e-25 120.6 123 57.7
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 1.2e-25 120.6 123 56.9
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 1.6e-25 120.2 123 57.7
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 2.8e-25 119.4 138 58.0
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 4.7e-25 118.6 112 61.6
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 4.7e-25 118.6 127 55.9
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 4.7e-25 118.6 126 57.1
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 6.2e-25 118.2 126 55.6
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 6.2e-25 118.2 123 59.3
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 6.2e-25 118.2 126 59.5
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.4e-24 117.1 127 55.1
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 4.0e-24 115.5 123 56.9
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 4.0e-24 115.5 128 57.0
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 5.2e-24 115.2 98 68.4
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 5.2e-24 115.2 98 68.4
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 6.8e-24 114.8 143 52.4
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 6.8e-24 114.8 129 56.6
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 8.9e-24 114.4 131 51.9
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 8.9e-24 114.4 129 55.0
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 8.9e-24 114.4 97 64.9
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 8.9e-24 114.4 129 57.4
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 8.9e-24 114.4 129 57.4
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 8.9e-24 114.4 129 57.4
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 8.9e-24 114.4 123 58.5
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 2.0e-23 113.2 128 50.8
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 2.6e-23 112.8 124 54.8
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 7.5e-23 111.3 123 55.3
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 9.8e-23 110.9 109 56.9
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 1.7e-22 110.2 128 55.5
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 2.9e-22 109.4 125 53.6
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 2.9e-22 109.4 123 54.5
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 2.9e-22 109.4 125 53.6
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 3.7e-22 109.0 125 53.6
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 3.7e-22 109.0 124 54.8
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 3.2e-21 105.9 135 51.9
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 5.4e-21 105.1 131 52.7
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 5.4e-21 105.1 122 51.6
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 7.1e-21 104.8 130 54.6
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 1.6e-20 103.6 133 54.9
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 2.1e-20 103.2 123 52.0
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 2.1e-20 103.2 123 52.8
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 6.2e-17 91.7 126 48.4
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 3.1e-16 89.4 73 65.8
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 4.0e-16 89.0 125 43.2
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 4.0e-16 89.0 123 46.3
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 7.6e-15 84.7 115 49.6
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 9.9e-15 84.3 125 40.8
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 1.7e-14 83.6 90 51.1
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 3.2e-13 79.3 55 83.6
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 7.1e-13 78.2 54 77.8
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 1.6e-12 77.0 132 40.9
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 1.6e-12 77.0 117 42.7
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 2.1e-12 76.6 82 57.3
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 3.9e-11 72.4 125 40.8
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.5e-10 70.5 106 43.4
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 4.7e-09 65.5 110 45.5


User provided reference genes

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