Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 0.0e+00 1692.2 906 100.0
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 0.0e+00 1442.2 905 85.1
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 0.0e+00 1438.3 905 84.9
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 0.0e+00 1435.2 905 85.9
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 4.0e-309 1064.7 918 65.4
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 1.1e-303 1046.6 914 64.6
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 1.2e-302 1043.1 916 65.7
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 3.0e-301 1038.5 915 65.8
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 5.7e-300 1034.2 916 63.2
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 2.7e-297 1025.4 906 65.8
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 6.2e-294 1014.2 916 63.1
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.8e-293 1012.7 915 61.5
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 8.9e-293 1010.4 915 61.4
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 2.6e-292 1008.8 914 63.1
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 4.4e-292 1008.1 919 63.2
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 1.3e-291 1006.5 914 64.9
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 3.7e-291 1005.0 916 63.8
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 8.3e-291 1003.8 915 63.5
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 9.2e-290 1000.3 915 63.4
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 4.3e-287 991.5 913 61.4
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 8.3e-283 977.2 919 60.4
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 1.4e-282 976.5 870 64.6
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 2.8e-278 962.2 915 62.0
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 2.6e-276 955.7 919 61.0
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 4.4e-276 954.9 917 61.5
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 1.3e-275 953.4 910 63.4
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 4.9e-275 951.4 921 60.2
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 8.4e-275 950.7 915 60.4
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 1.9e-274 949.5 921 59.9
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 6.0e-273 944.5 921 58.6
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 3.0e-272 942.2 915 61.5
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 3.9e-272 941.8 874 63.7
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 2.5e-271 939.1 901 58.7
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 5.6e-271 937.9 918 59.7
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 1.2e-270 936.8 927 58.0
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 2.1e-270 936.0 919 60.4
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 8.9e-269 930.6 917 59.1
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.4e-266 923.3 917 59.3
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 4.2e-266 921.8 912 60.9
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 1.5e-263 913.3 914 59.2
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 1.9e-263 912.9 920 57.0
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 9.6e-263 910.6 920 56.8
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.3e-262 910.2 901 60.4
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 1.6e-262 909.8 912 58.8
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 2.8e-262 909.1 908 60.5
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 6.2e-262 907.9 901 60.4
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 1.2e-260 903.7 913 60.5
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 2.0e-260 902.9 901 60.4
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 4.4e-260 901.7 925 57.4
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 5.8e-260 901.4 902 59.8
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 7.6e-260 901.0 913 59.9
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 1.3e-259 900.2 927 60.4
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 4.9e-259 898.3 912 58.8
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 6.4e-259 897.9 925 57.2
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 1.1e-258 897.1 927 60.2
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 3.2e-258 895.6 905 59.0
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.7e-256 889.8 926 56.4
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 2.3e-256 889.4 898 58.7
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 8.7e-256 887.5 793 64.8
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 4.3e-255 885.2 923 57.4
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 2.1e-254 882.9 913 59.5
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 5.3e-253 878.2 912 59.6
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 1.2e-252 877.1 819 63.2
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 1.7e-251 873.2 806 63.3
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 6.4e-251 871.3 806 63.2
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 5.1e-248 861.7 914 56.5
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 5.1e-248 861.7 914 57.2
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 5.1e-248 861.7 913 57.3
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 6.7e-248 861.3 892 56.5
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 9.6e-247 857.4 903 56.5
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 2.1e-246 856.3 874 60.1
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 1.1e-245 854.0 911 57.5
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 2.2e-243 846.3 872 58.4
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 5.5e-242 841.6 906 54.6
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 7.1e-242 841.3 930 54.1
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 1.0e-240 837.4 912 56.8
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 6.7e-240 834.7 914 56.5
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 1.1e-239 833.9 917 53.5
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 7.4e-239 831.2 919 53.4
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 2.4e-237 826.2 914 57.8
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 4.1e-237 825.5 917 55.1
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 4.1e-237 825.5 919 55.9
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 9.3e-234 814.3 917 56.6
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 1.8e-232 810.1 915 53.0
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 1.9e-231 806.6 912 56.2
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 2.2e-230 803.1 872 56.1
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 8.2e-230 801.2 920 55.4
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 1.4e-229 800.4 880 56.8
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 2.9e-227 792.7 914 53.4
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 3.2e-226 789.3 928 52.9
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 1.4e-221 773.9 918 55.0
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 2.0e-220 770.0 884 53.4
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 8.5e-219 764.6 919 51.5
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 2.0e-212 743.4 881 55.4
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 5.9e-212 741.9 900 51.3
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.4e-208 730.7 912 50.8
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 1.4e-208 730.7 874 52.9
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 3.3e-207 726.1 916 49.3
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 4.8e-206 722.2 783 54.0
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 3.8e-203 712.6 916 52.8
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 5.5e-202 708.8 922 50.9
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 6.1e-201 705.3 905 50.7
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 1.0e-200 704.5 910 50.8
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 1.2e-199 701.0 910 50.5
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 7.5e-199 698.4 877 51.7
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 1.7e-198 697.2 909 49.3
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 2.4e-197 693.3 861 48.2
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 2.4e-197 693.3 898 51.4
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 1.2e-196 691.0 909 48.3
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 2.0e-196 690.3 858 53.4
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 1.2e-193 681.0 898 51.1
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 3.6e-193 679.5 897 50.8
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 6.1e-193 678.7 879 52.8
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 1.8e-192 677.2 914 47.6
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 1.2e-191 674.5 857 50.5
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 3.4e-191 672.9 852 52.2
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.7e-190 670.6 892 48.4
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 1.8e-189 667.2 910 49.0
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 3.1e-189 666.4 742 56.2
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.6e-188 664.1 890 49.7
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 7.3e-186 655.2 859 50.8
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 6.1e-185 652.1 862 48.4
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 1.2e-183 647.9 888 49.2
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 1.5e-183 647.5 874 49.2
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 2.0e-183 647.1 890 49.3
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 5.7e-183 645.6 885 48.8
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 9.8e-183 644.8 871 49.1
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 2.4e-181 640.2 888 48.2
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 3.2e-181 639.8 885 48.6
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 4.6e-180 636.0 927 45.7
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 1.3e-179 634.4 816 53.2
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 8.9e-176 621.7 923 48.2
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 7.5e-175 618.6 945 46.1
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 1.3e-174 617.8 923 48.3
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 9.2e-173 611.7 498 69.3
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 4.3e-170 602.8 906 46.0
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 7.3e-170 602.1 770 53.0
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 2.1e-169 600.5 909 45.8
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 6.4e-166 589.0 771 51.9
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 2.4e-165 587.0 931 45.6
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 8.9e-160 568.5 790 47.5
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 2.9e-158 563.5 930 45.3
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 6.4e-158 562.4 927 44.6
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 6.4e-158 562.4 888 44.9
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.1e-154 551.6 927 43.5
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 4.5e-143 513.1 861 45.6
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 2.1e-140 504.2 762 47.2
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 5.1e-139 499.6 858 42.8
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 2.8e-129 467.2 860 41.9
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 2.4e-128 464.2 913 40.6
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 1.6e-124 451.4 902 41.7
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 1.4e-117 428.3 776 42.3
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 2.7e-116 424.1 921 39.7
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 1.1e-114 418.7 655 48.5
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 4.8e-113 413.3 932 38.7
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 3.4e-111 407.1 929 38.8
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 9.4e-109 399.1 920 38.0
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 2.3e-107 394.4 403 58.1
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 4.8e-105 386.7 917 37.3
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 1.4e-101 375.2 927 36.4
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 2.5e-101 374.4 927 38.0
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 4.7e-100 370.2 926 37.5
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 5.3e-88 330.1 881 34.5
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.6e-79 302.0 1013 33.7
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 1.7e-78 298.5 911 33.2
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 2.8e-73 281.2 309 50.5
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 7.3e-69 266.5 381 47.5
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 2.2e-65 255.0 377 46.2
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 3.9e-62 244.2 298 48.0
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 2.1e-60 238.4 355 43.1
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 3.1e-59 234.6 444 41.2
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 2.6e-58 231.5 299 47.5
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 4.3e-53 214.2 363 38.8
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 1.5e-45 189.1 525 33.3
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 2.5e-45 188.3 228 48.2
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 5.6e-45 187.2 260 60.4
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 8.1e-44 183.3 343 37.0
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 3.1e-43 181.4 322 37.3
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 1.5e-42 179.1 97 94.8
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.1e-40 172.9 251 41.4
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.2e-39 169.5 183 53.0
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 2.5e-37 161.8 312 35.3
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 2.4e-16 92.0 215 32.6
SEGI_26240 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 7.1e-08 63.9 301 25.2


User provided reference genes

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