Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011000 Sechium edule HOM05D007551 ORTHO05D009424 1.0e-154 551.6 274 100.0
ClCG07G011220 Citrullus lanatus HOM05D007551 ORTHO05D009424 4.2e-132 476.5 274 85.8
MELO3C016242.2 Cucumis melo HOM05D007551 ORTHO05D009424 8.5e-125 452.2 273 82.1
Sed0007434 Sechium edule HOM05D007551 ORTHO05D009424 2.5e-124 450.7 273 83.2
CsaV3_4G007030 Cucumis sativus L. HOM05D007551 ORTHO05D009424 9.7e-121 438.7 274 79.6
CiPaw.12G053700 Carya illinoinensis HOM05D007551 ORTHO05D009424 1.0e-77 295.8 279 55.9
Prupe.3G018200 Prunus persica HOM05D007551 ORTHO05D009424 3.9e-77 293.9 281 56.9
FvH4_5g24430 Fragaria vesca HOM05D007551 ORTHO05D009424 1.7e-72 278.5 282 53.5
FAN13G0867 Fragaria x ananassa HOM05D007551 ORTHO05D009424 6.4e-72 276.6 290 51.7
QL11p054679 Quercus lobata HOM05D007551 ORTHO05D009424 1.4e-71 275.4 292 53.4
Dinv37453 Davidia involucrata HOM05D007551 ORTHO05D009424 1.9e-71 275.0 286 53.1
MD06G1022200 Malus domestica HOM05D007551 ORTHO05D009424 2.4e-71 274.6 278 55.0
Cfa012637 Carpinus fangiana HOM05D007551 ORTHO05D009424 7.0e-71 273.1 287 50.9
GSVIVG01036918001 Vitis vinifera HOM05D007551 ORTHO05D009424 6.0e-70 270.0 274 54.7
Ciclev10000274m.g Citrus clementina HOM05D007551 ORTHO05D009424 1.7e-69 268.5 229 61.1
Hma1.2p1_0294F.1_g116420 Hydrangea macrophylla HOM05D007551 ORTHO05D009424 5.0e-69 266.9 290 52.8
RcHm_v2.0_Chr7g0214821 Rosa chinensis HOM05D007551 ORTHO05D009424 7.3e-68 263.1 246 57.3
TAR633G1897 Trochodendron aralioides HOM05D007551 ORTHO05D009424 8.9e-66 256.1 275 50.9
TAR362G0203 Trochodendron aralioides HOM05D007551 ORTHO05D009424 1.2e-65 255.8 276 53.6
Rhsim04G0146500 Rhododendron simsii HOM05D007551 ORTHO05D009424 4.1e-63 247.3 241 54.4
TWI60G1073 Tripterygium wilfordii HOM05D007551 ORTHO05D009424 5.4e-63 246.9 268 51.5
TWI34G0706 Tripterygium wilfordii HOM05D007551 ORTHO05D009424 9.2e-63 246.1 254 53.9
Atru.chr6.2125 Acer truncatum HOM05D007551 ORTHO05D009424 6.0e-62 243.4 228 54.8
EL10Ac5g11872 Beta vulgaris HOM05D007551 ORTHO05D009424 6.0e-62 243.4 272 50.0
Nn6g33703 Nelumbo nucifera HOM05D007551 ORTHO05D009424 7.8e-62 243.0 228 57.5
RcHm_v2.0_Chr7g0219861 Rosa chinensis HOM05D007551 ORTHO05D009424 2.3e-61 241.5 285 49.8
COL.COLO4_16723 Corchorus olitorius HOM05D007551 ORTHO05D009424 3.9e-61 240.7 287 50.2
Sc07g0008330 Simmondsia chinensis HOM05D007551 ORTHO05D009424 1.9e-60 238.4 229 53.3
Thecc.03G322800 Theobroma cacao HOM05D007551 ORTHO05D009424 3.3e-60 237.7 296 45.9
PGR042G1889 Punica granatum HOM05D007551 ORTHO05D009424 4.3e-60 237.3 275 49.5
VMungo0251G2062 Vigna mungo HOM05D007551 ORTHO05D009424 6.2e-59 233.4 293 46.8
Ah.12g056170 Amaranthus hybridus HOM05D000351 ORTHO05D009424 8.1e-59 233.0 275 49.5
Peaxi162Scf00619g00022 Petunia axillaris HOM05D007551 ORTHO05D009424 1.2e-57 229.2 277 47.3
RcHm_v2.0_Chr4g0405931 Rosa chinensis HOM05D007551 ORTHO05D009424 3.4e-57 227.6 279 48.4
Lalb_Chr09g0334421 Lupinus albus HOM05D007551 ORTHO05D009424 5.8e-57 226.9 266 48.9
Gorai.N026600 Gossypium raimondii HOM05D007551 ORTHO05D009424 7.6e-57 226.5 276 47.1
Nn1g00676 Nelumbo nucifera HOM05D007551 ORTHO05D009424 7.6e-57 226.5 272 48.5
FvH4_4g10440 Fragaria vesca HOM05D007551 ORTHO05D009424 1.3e-56 225.7 279 47.3
Nitab4.5_0002667g0100 Nicotiana tabacum HOM05D007551 ORTHO05D009424 1.3e-56 225.7 289 44.3
FvH4_4g10410 Fragaria vesca HOM05D007551 ORTHO05D009424 1.7e-56 225.3 279 47.3
Gohir.A12G200366 Gossypium hirsutum HOM05D007551 ORTHO05D009424 1.7e-56 225.3 276 47.1
Phvul.003G277400 Phaseolus vulgaris HOM05D007551 ORTHO05D009424 3.8e-56 224.2 228 52.2
Haze_08024 Corylus avellana HOM05D007551 ORTHO05D009424 8.4e-56 223.0 206 54.4
Nitab4.5_0000856g0020 Nicotiana tabacum HOM05D007551 ORTHO05D009424 1.1e-55 222.6 289 44.3
Solyc11g005940.3 Solanum lycopersicum HOM05D007551 ORTHO05D009424 1.4e-55 222.2 289 43.6
Sopen11g001880 Solanum pennellii HOM05D007551 ORTHO05D009424 1.9e-55 221.9 289 43.6
PGSC0003DMG402028683 Solanum tuberosum HOM05D007551 ORTHO05D009424 4.1e-55 220.7 289 44.3
Lsat_1_v5_gn_6_75081 Lactuca sativa HOM05D007551 ORTHO05D009424 4.6e-54 217.2 281 47.7
AT4G19440 Arabidopsis thaliana HOM05D007551 ORTHO05D009424 7.8e-54 216.5 239 48.1
Carub.0007s2177 Capsella rubella HOM05D007551 ORTHO05D009424 1.7e-53 215.3 227 51.5
Gohir.D12G203200 Gossypium hirsutum HOM05D007551 ORTHO05D009424 2.3e-53 214.9 276 45.3
AL7G34670 Arabidopsis lyrata HOM05D007551 ORTHO05D009424 3.9e-53 214.2 227 50.7
BcaB03g11619 Brassica carinata HOM05D007551 ORTHO05D009424 8.6e-53 213.0 226 52.2
Thhalv10024401m.g Eutrema salsugineum HOM05D007551 ORTHO05D009424 1.5e-52 212.2 224 51.3
Eucgr.E01036 Eucalyptus grandis HOM05D007551 ORTHO05D009424 2.5e-52 211.5 228 50.9
Manes.17G006200 Manihot esculenta HOM05D007551 ORTHO05D009424 4.3e-52 210.7 240 53.8
CAN.G652.9 Capsicum annuum HOM05D007551 ORTHO05D009424 1.2e-51 209.1 290 43.1
Aa31LG6G2050 Aethionema arabicum HOM05D007551 ORTHO05D009424 4.7e-51 207.2 225 49.3
Oeu040609.1 Olea europaea HOM05D007551 ORTHO05D009424 4.7e-51 207.2 249 47.8
Glyma.16G058700 Glycine max HOM05D007551 ORTHO05D009424 6.2e-51 206.8 231 48.5
Lj4g0019089 Lotus japonicus HOM05D007551 ORTHO05D009424 1.4e-50 205.7 222 51.4
Oeu029773.2 Olea europaea HOM05D007551 ORTHO05D009424 1.4e-50 205.7 229 50.7
Potri.003G105700 Populus trichocarpa HOM05D007551 ORTHO05D009424 1.4e-50 205.7 247 48.2
PSO210G4217 Papaver somniferum HOM05D007551 ORTHO05D009424 2.4e-50 204.9 287 45.6
Sp7g18060 Schrenkiella parvula HOM05D007551 ORTHO05D009424 9.0e-50 203.0 271 43.9
Sabra03G0072700 Salix brachista HOM05D007551 ORTHO05D009424 7.6e-49 199.9 246 48.0
MSTRG.1750 Avicennia marina HOM05D007551 ORTHO05D009424 1.3e-48 199.1 254 45.7
PSO210G5788 Papaver somniferum HOM05D007551 ORTHO05D009424 3.8e-48 197.6 238 50.0
Cc00_g20060 Coffea canephora HOM05D007551 ORTHO05D009424 1.1e-47 196.1 319 40.1
Migut.E01387 Erythranthe guttata HOM05D007551 ORTHO05D009424 7.8e-46 189.9 227 45.8
MBI13_g36729_MAGBIO Magnolia biondii HOM05D007551 ORTHO05D009424 3.3e-44 184.5 224 46.4
SalBow1G3247 Salvia bowleyana HOM05D007551 ORTHO05D009424 7.3e-44 183.3 227 44.5
SalBow8G4006 Salvia bowleyana HOM05D007551 ORTHO05D009424 7.3e-44 183.3 227 44.5
ECA240G1023 Erigeron canadensis HOM05D000046 ORTHO05D000457 3.6e-43 181.0 201 48.8
SGA_v2.0_scaffold121G33050 Striga asiatica HOM05D007551 ORTHO05D009424 5.3e-42 177.2 228 44.7
FAN04G0939 Fragaria x ananassa HOM05D007551 ORTHO05D009424 2.0e-41 175.3 289 38.1
AUR62044750 Chenopodium quinoa HOM05D007551 ORTHO05D009424 1.3e-37 162.5 169 50.9
Cpa.g.c44844 Carica papaya HOM05D007551 ORTHO05D009424 5.6e-36 157.1 217 46.1
Psat4g109680 Pisum sativum HOM05D007551 ORTHO05D009424 1.6e-35 155.6 181 50.3
BolC3t20473H Brassica oleracea HOM05D007551 ORTHO05D009424 8.1e-35 153.3 196 44.4
Medtr8g071970 Medicago truncatula HOM05D007551 ORTHO05D009424 1.4e-34 152.5 247 40.1
Aqoxy2G03897 Aquilegia oxysepala HOM05D007551 ORTHO05D009424 4.0e-34 151.0 177 49.2
TPR.G16813 Trifolium pratense HOM05D007551 ORTHO05D009424 1.2e-33 149.4 194 45.9
C03p81990 Brassica napus HOM05D007551 ORTHO05D009424 2.6e-33 148.3 196 43.4
CSS0048505 Camellia sinensis var. sinensis HOM05D007551 ORTHO05D009424 2.2e-32 145.2 135 54.1
CSS0008559 Camellia sinensis var. sinensis HOM05D007551 ORTHO05D009424 6.4e-32 143.7 135 53.3
CARHR226230 Cardamine hirsuta HOM05D007551 ORTHO05D009424 4.6e-30 137.5 229 40.2
Cpa.g.sc3.432 Carica papaya HOM05D007551 ORTHO05D009424 1.5e-28 132.5 99 60.6
Oeu044967.1 Olea europaea HOM05D007551 ORTHO05D009424 1.3e-27 129.4 132 47.7
Lalb_Chr05g0229381 Lupinus albus HOM05D007551 ORTHO05D009424 1.5e-25 122.5 102 54.9
Lj8C372G5 Lonicera japonica HOM05D007551 ORTHO05D009424 4.5e-25 120.9 101 50.5
HPP92_013860 Vanilla planifolia HOM05D007551 ORTHO05D009424 1.7e-24 119.0 232 36.6
MD16G1287400 Malus domestica HOM05D007551 ORTHO05D009424 1.5e-17 95.9 71 64.8
SalBow8G0178 Salvia bowleyana HOM05D007551 ORTHO05D009424 3.0e-13 81.6 76 50.0
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 6.7e-13 80.5 244 28.3
ATR0626G221 Amborella trichopoda HOM05D007551 ORTHO05D009424 9.7e-12 76.6 213 33.8
Ca_22472_v3 Cicer arietinum L. HOM05D007551 ORTHO05D009424 1.3e-11 76.3 96 44.8
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 2.2e-11 75.5 216 29.2
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 2.8e-11 75.1 195 31.3
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 2.4e-10 72.0 195 28.7
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 5.3e-10 70.9 188 27.1
HPP92_013845 Vanilla planifolia HOM05D007551 ORTHO05D009424 1.2e-09 69.7 102 38.2
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 1.5e-09 69.3 189 32.8
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 1.5e-09 69.3 184 29.9
FAN17G3133 Fragaria x ananassa HOM05D007551 ORTHO05D009424 2.0e-09 68.9 101 35.6
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 3.4e-09 68.2 196 25.5
PSO017G0179 Papaver somniferum HOM05D005764 ORTHO05D006600 7.7e-09 67.0 182 29.1
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 7.7e-09 67.0 194 27.3
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 1.0e-08 66.6 188 31.9
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 1.3e-08 66.2 231 28.1
Eucgr.J02064 Eucalyptus grandis HOM05D007212 ORTHO05D009094 2.9e-08 65.1 208 30.3
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 2.9e-08 65.1 194 26.8
CARHR058230 Cardamine hirsuta HOM05D007291 ORTHO05D009038 3.8e-08 64.7 251 25.9
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 3.8e-08 64.7 189 29.6
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 6.5e-08 63.9 188 29.8
TWI14G0891 Tripterygium wilfordii HOM05D005764 ORTHO05D006600 6.5e-08 63.9 190 28.9
Ah.02g128350 Amaranthus hybridus HOM05D007212 ORTHO05D009094 8.5e-08 63.5 190 30.0
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 8.5e-08 63.5 189 28.6
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 1.1e-07 63.2 267 25.5
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.4e-07 62.8 181 27.1
AUR62040786 Chenopodium quinoa HOM05D001653 ORTHO05D001751 1.9e-07 62.4 207 28.5
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 2.5e-07 62.0 128 32.0
MBI04_g37009_MAGBIO Magnolia biondii HOM05D006694 ORTHO05D008240 3.2e-07 61.6 94 34.0
THA.LOC104805375 Tarenaya hassleriana HOM05D007358 ORTHO05D009117 3.2e-07 61.6 212 26.9
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 5.5e-07 60.8 194 28.4
Migut.G01143 Erythranthe guttata HOM05D007212 ORTHO05D009094 7.2e-07 60.5 212 28.8
Lj1A1039T30 Lonicera japonica HOM05D005764 ORTHO05D006600 7.2e-07 60.5 195 27.7
Migut.L00762 Erythranthe guttata HOM05D007639 ORTHO05D009509 9.4e-07 60.1 195 27.2
Gorai.003G135500 Gossypium raimondii HOM05D007212 ORTHO05D009094 9.4e-07 60.1 184 29.9
Cpa.g.sc190.19 Carica papaya HOM05D007212 ORTHO05D009094 1.2e-06 59.7 185 31.9
Gohir.D08G049200 Gossypium hirsutum HOM05D007545 ORTHO05D009579 1.2e-06 59.7 240 25.4
SHI16405 Sapria himalayana HOM05D007358 ORTHO05D009117 1.2e-06 59.7 243 25.9
Migut.D02115 Erythranthe guttata HOM05D007212 ORTHO05D009094 2.1e-06 58.9 212 28.3
TWI77G0027 Tripterygium wilfordii HOM05D007545 ORTHO05D009579 2.1e-06 58.9 244 26.2
TAR623G1496 Trochodendron aralioides HOM05D007750 ORTHO05D009803 2.1e-06 58.9 191 28.3
CsaV3_5G006140 Cucumis sativus L. HOM05D005764 ORTHO05D006600 2.7e-06 58.5 180 31.1
FAN18G4460 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.7e-06 58.5 125 31.2
Gorai.004G065800 Gossypium raimondii HOM05D007893 ORTHO05D010042 2.7e-06 58.5 110 37.3
vmacro04826 Vaccinium macrocarpon HOM05D007639 ORTHO05D009509 2.7e-06 58.5 144 30.6
vmacro04988 Vaccinium macrocarpon HOM05D007639 ORTHO05D009509 2.7e-06 58.5 144 30.6
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 3.6e-06 58.2 212 25.5
ClCG02G002730 Citrullus lanatus HOM05D003210 ORTHO05D000001 3.6e-06 58.2 259 25.9
MBI16_g10987_MAGBIO Magnolia biondii HOM05D007639 ORTHO05D009509 3.6e-06 58.2 144 35.4
QL05p074803 Quercus lobata HOM05D007956 ORTHO05D010152 3.6e-06 58.2 244 27.9
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 4.7e-06 57.8 106 35.8
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 4.7e-06 57.8 190 23.7
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 4.7e-06 57.8 226 27.4
GSVIVG01013113001 Vitis vinifera HOM05D007893 ORTHO05D010042 4.7e-06 57.8 92 41.3
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 6.1e-06 57.4 106 35.8
COL.COLO4_16973 Corchorus olitorius HOM05D000070 ORTHO05D007358 6.1e-06 57.4 84 38.1
MD11G1144200 Malus domestica HOM05D007212 ORTHO05D009094 6.1e-06 57.4 184 29.3
Potri.001G236800 Populus trichocarpa HOM05D007212 ORTHO05D009094 6.1e-06 57.4 183 28.4
QL11p027136 Quercus lobata HOM05D005764 ORTHO05D006600 6.1e-06 57.4 179 30.7
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 6.1e-06 57.4 106 32.1
Rhsim13G0082600 Rhododendron simsii HOM05D007750 ORTHO05D009803 7.9e-06 57.0 72 37.5
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 7.9e-06 57.0 195 27.7


User provided reference genes

Program Settings