Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010994 Sechium edule HOM05D007041 ORTHO05D008036 6.4e-44 180.6 111 100.0
CsaV3_3G008250 Cucumis sativus L. HOM05D007041 ORTHO05D008036 3.5e-26 121.7 113 56.6
MELO3C006045.2 Cucumis melo HOM05D007041 ORTHO05D008036 4.3e-24 114.8 114 59.6
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 3.0e-09 65.5 122 38.5
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 3.0e-09 65.5 35 74.3
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 3.0e-09 65.5 119 38.7
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 3.9e-09 65.1 123 39.8
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 8.8e-09 63.9 122 37.7
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 1.5e-08 63.2 111 36.0
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 1.9e-08 62.8 32 78.1
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 3.3e-08 62.0 31 77.4
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 4.3e-08 61.6 31 80.6
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 4.3e-08 61.6 31 80.6
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 7.4e-08 60.8 30 80.0
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 9.7e-08 60.5 122 36.9
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 9.7e-08 60.5 29 82.8
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 9.7e-08 60.5 34 70.6
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 9.7e-08 60.5 31 77.4
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.3e-07 60.1 128 31.2
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.3e-07 60.1 31 74.2
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.3e-07 60.1 31 74.2
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.7e-07 59.7 31 74.2
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 2.2e-07 59.3 34 67.6
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 2.2e-07 59.3 33 69.7
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 2.2e-07 59.3 29 79.3
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 2.8e-07 58.9 31 74.2
Nn2g15118 Nelumbo nucifera HOM05D007041 ORTHO05D008036 3.7e-07 58.5 34 70.6
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 3.7e-07 58.5 34 67.6
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 4.8e-07 58.2 29 79.3
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 4.8e-07 58.2 31 71.0
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 4.8e-07 58.2 29 79.3
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 4.8e-07 58.2 29 79.3
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 4.8e-07 58.2 29 79.3
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 4.8e-07 58.2 29 79.3
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 6.3e-07 57.8 28 82.1
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 6.3e-07 57.8 29 79.3
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 8.2e-07 57.4 29 72.4
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 1.1e-06 57.0 31 71.0
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 1.4e-06 56.6 29 79.3
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 1.4e-06 56.6 29 72.4
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.8e-06 56.2 33 60.6
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 1.8e-06 56.2 28 78.6
Sopen08g030330 Solanum pennellii HOM05D002045 ORTHO05D002014 1.8e-06 56.2 29 75.9
PGSC0003DMG400012302 Solanum tuberosum HOM05D007041 ORTHO05D008036 1.8e-06 56.2 29 75.9
Thhalv10001747m.g Eutrema salsugineum HOM05D010682 ORTHO05D012785 2.4e-06 55.8 30 70.0
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 2.4e-06 55.8 29 75.9
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 2.4e-06 55.8 29 72.4
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 2.4e-06 55.8 33 66.7
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 3.1e-06 55.5 29 69.0
Haze_08658 Corylus avellana HOM05D007041 ORTHO05D008036 3.1e-06 55.5 29 72.4
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 3.1e-06 55.5 28 78.6
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 3.1e-06 55.5 29 65.5
Medtr8g027305 Medicago truncatula HOM05D007041 ORTHO05D008036 3.1e-06 55.5 29 79.3
Medtr8g027905 Medicago truncatula HOM05D001941 ORTHO05D008036 3.1e-06 55.5 29 79.3
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 3.1e-06 55.5 29 72.4
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 3.1e-06 55.5 29 69.0
BcaB01g03218 Brassica carinata HOM05D010682 ORTHO05D012785 4.1e-06 55.1 30 70.0
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 4.1e-06 55.1 31 67.7
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 4.1e-06 55.1 29 72.4
HPP92_007621 Vanilla planifolia HOM05D007041 ORTHO05D008036 4.1e-06 55.1 30 66.7
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 6.9e-06 54.3 29 72.4
BcaC02g12691 Brassica carinata HOM05D010682 ORTHO05D012785 6.9e-06 54.3 30 70.0
BcaC04g19548 Brassica carinata HOM05D010682 ORTHO05D012785 6.9e-06 54.3 30 70.0
A05p01410 Brassica napus HOM05D010682 ORTHO05D012785 6.9e-06 54.3 30 70.0
C04p01580 Brassica napus HOM05D010682 ORTHO05D012785 6.9e-06 54.3 30 70.0
BolC4t21810H Brassica oleracea HOM05D010682 ORTHO05D012785 6.9e-06 54.3 30 70.0
BolC9t58317H Brassica oleracea HOM05D010682 ORTHO05D012785 6.9e-06 54.3 30 70.0
BraA05t19138Z Brassica rapa HOM05D010682 ORTHO05D012785 6.9e-06 54.3 30 70.0
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 6.9e-06 54.3 29 69.0
Nitab4.5_0000223g0230 Nicotiana tabacum HOM05D007041 ORTHO05D008036 6.9e-06 54.3 30 73.3
Nitab4.5_0004161g0040 Nicotiana tabacum HOM05D007041 ORTHO05D008036 6.9e-06 54.3 30 73.3
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 6.9e-06 54.3 29 69.0
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 9.1e-06 53.9 32 65.6
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 9.1e-06 53.9 29 69.0
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 9.1e-06 53.9 29 69.0
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 9.1e-06 53.9 29 72.4
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 9.1e-06 53.9 29 72.4
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 9.1e-06 53.9 29 69.0
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 9.1e-06 53.9 29 69.0
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 9.1e-06 53.9 29 69.0
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 9.1e-06 53.9 103 32.0
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 9.1e-06 53.9 29 69.0


User provided reference genes

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