Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 0.0e+00 1327.0 685 100.0
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 0.0e+00 1131.3 688 85.5
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 0.0e+00 1086.2 688 82.4
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 2.2e-259 899.0 690 67.4
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 1.2e-257 893.3 589 80.5
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 2.3e-256 889.0 678 66.5
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 1.7e-251 872.8 734 62.8
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 2.0e-249 865.9 698 64.0
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 5.0e-248 861.3 680 64.9
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 5.6e-247 857.8 686 65.5
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 7.3e-247 857.4 689 64.3
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 2.8e-246 855.5 690 65.1
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 3.2e-242 842.0 679 65.5
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.3e-240 836.6 683 63.0
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 1.3e-240 836.6 682 64.8
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 3.3e-239 832.0 690 62.9
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 4.7e-238 828.2 690 62.8
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 3.1e-237 825.5 680 63.1
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 3.1e-237 825.5 694 63.0
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 4.0e-237 825.1 690 62.6
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 4.9e-235 818.1 690 62.0
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 6.4e-235 817.8 687 62.2
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 3.0e-232 808.9 692 62.0
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 3.9e-232 808.5 682 62.5
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 1.9e-231 806.2 686 62.2
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 3.3e-231 805.4 683 61.5
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 2.4e-229 799.3 681 61.4
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 3.1e-229 798.9 684 63.5
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 1.2e-228 797.0 683 62.1
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 9.9e-228 793.9 683 61.5
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 1.3e-227 793.5 671 62.3
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 6.4e-227 791.2 683 61.8
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 2.1e-225 786.2 675 61.2
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 4.6e-225 785.0 688 60.6
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 1.3e-224 783.5 673 59.7
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 4.3e-223 778.5 682 60.0
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 5.6e-223 778.1 681 60.6
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 7.3e-223 777.7 682 60.7
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 3.1e-221 772.3 675 61.6
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 9.0e-221 770.8 682 59.1
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 4.4e-220 768.5 680 58.7
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 5.8e-220 768.1 694 59.2
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 1.3e-219 766.9 715 58.5
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 1.3e-219 766.9 682 58.8
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 1.4e-218 763.5 675 61.3
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 4.2e-218 761.9 724 55.7
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 4.2e-218 761.9 684 60.2
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 5.4e-218 761.5 688 59.9
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 4.6e-217 758.4 703 58.0
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 2.1e-214 749.6 602 64.5
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 4.8e-214 748.4 692 57.4
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 1.8e-213 746.5 700 56.1
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 3.1e-213 745.7 680 59.9
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 3.8e-211 738.8 691 57.6
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 1.9e-210 736.5 689 57.2
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.3e-206 723.8 729 53.8
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 6.4e-203 711.4 684 57.9
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 7.1e-202 708.0 685 56.1
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 2.1e-201 706.4 643 58.3
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 7.9e-201 704.5 684 55.4
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 2.3e-200 703.0 671 56.5
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 1.9e-199 699.9 692 54.8
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 2.5e-199 699.5 688 55.7
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 5.6e-199 698.4 684 55.6
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 9.6e-199 697.6 681 55.5
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 1.3e-198 697.2 693 55.0
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 1.6e-198 696.8 684 55.4
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 1.4e-197 693.7 682 55.1
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 1.8e-197 693.3 604 60.1
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 1.5e-196 690.3 684 55.0
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 5.8e-196 688.3 488 70.1
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 1.7e-195 686.8 684 55.0
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 2.9e-195 686.0 677 54.8
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 4.2e-194 682.2 639 58.2
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 7.1e-194 681.4 676 53.7
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 7.9e-193 677.9 686 55.4
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 1.3e-192 677.2 685 53.9
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 1.1e-191 674.1 689 53.1
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 5.3e-189 665.2 689 54.1
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 9.0e-189 664.5 686 53.6
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 2.6e-188 662.9 601 58.4
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 1.1e-186 657.5 672 53.9
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 2.3e-184 649.8 682 52.6
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 1.1e-181 641.0 671 52.8
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 5.3e-181 638.6 648 54.6
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 1.5e-180 637.1 608 56.6
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 9.4e-178 627.9 617 53.6
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 1.4e-168 597.4 684 50.4
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 8.8e-168 594.7 704 49.1
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 5.7e-167 592.0 691 49.3
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 7.0e-165 585.1 674 49.1
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 1.1e-157 561.2 614 51.5
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 5.9e-156 555.4 645 49.6
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 2.7e-148 530.0 672 48.2
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 1.7e-134 484.2 708 42.5
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 2.4e-125 453.8 476 48.5
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 4.6e-124 449.5 302 70.2
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 5.1e-123 446.0 614 44.3
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 6.6e-115 419.1 713 40.1
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 1.4e-112 411.4 271 70.1
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 2.4e-109 400.6 353 54.4
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 6.5e-62 243.0 310 50.6
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 1.8e-56 224.9 219 54.3
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.1e-40 170.6 110 70.0
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.5e-39 167.5 104 73.1
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.2e-38 164.9 104 71.2
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.2e-36 159.1 100 72.0
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 1.2e-31 142.5 404 30.2
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.4e-27 129.0 85 68.2
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 8.9e-27 126.3 85 67.1
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 2.0e-26 125.2 206 45.1
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 6.4e-17 93.6 340 25.9
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 4.3e-13 80.9 47 74.5
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 5.8e-10 70.5 180 31.1
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.7e-07 61.6 59 50.8


User provided reference genes

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