Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 2.4e-231 805.1 387 100.0
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 6.2e-187 657.5 377 83.8
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 1.1e-186 656.8 377 83.6
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 1.9e-159 566.2 378 71.2
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 7.2e-151 537.7 379 67.8
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 9.7e-148 527.3 378 64.6
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 2.4e-146 522.7 375 65.9
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 1.6e-145 520.0 377 65.3
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 2.7e-145 519.2 378 65.1
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 4.2e-143 511.9 377 65.5
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 1.7e-139 500.0 376 63.0
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 4.8e-139 498.4 378 62.4
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 8.3e-139 497.7 377 62.9
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 8.3e-139 497.7 379 62.3
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 2.7e-137 492.7 376 63.0
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 4.5e-137 491.9 376 63.3
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 5.5e-135 485.0 382 60.2
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 1.2e-134 483.8 361 61.5
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 4.7e-134 481.9 382 59.9
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 4.7e-134 481.9 379 61.2
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 6.1e-134 481.5 380 59.2
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 6.1e-134 481.5 379 62.5
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 6.1e-134 481.5 393 59.8
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 6.1e-134 481.5 388 59.8
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 8.0e-134 481.1 393 59.8
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 1.8e-133 479.9 386 60.6
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 1.2e-132 477.2 377 62.1
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 3.4e-132 475.7 393 58.5
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 7.5e-132 474.6 378 60.1
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 1.7e-131 473.4 386 59.6
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 1.7e-131 473.4 377 59.7
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 2.8e-131 472.6 352 64.8
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 1.8e-130 469.9 379 60.7
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 3.1e-130 469.2 379 59.4
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 5.4e-130 468.4 377 59.4
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 7.0e-130 468.0 393 58.0
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 2.0e-129 466.5 376 59.0
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 2.7e-129 466.1 377 58.9
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 4.5e-129 465.3 381 59.3
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 5.9e-129 464.9 354 64.1
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 1.3e-128 463.8 383 59.5
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 1.3e-128 463.8 376 58.8
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 2.9e-128 462.6 379 59.4
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 1.9e-127 459.9 358 61.2
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 3.3e-127 459.1 379 58.8
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 1.6e-126 456.8 377 59.2
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 3.6e-126 455.7 409 56.2
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 1.4e-125 453.8 381 58.8
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 1.8e-125 453.4 381 58.8
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 2.6e-124 449.5 377 58.9
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 7.5e-124 448.0 419 54.9
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 2.2e-123 446.4 530 44.7
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 3.7e-123 445.7 379 55.9
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 8.3e-123 444.5 380 56.1
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 4.6e-121 438.7 382 55.5
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 6.0e-121 438.3 382 55.5
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 1.0e-120 437.6 346 60.1
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 1.3e-120 437.2 380 56.3
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 1.3e-120 437.2 380 56.3
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 1.3e-120 437.2 378 55.6
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 3.9e-120 435.6 382 55.0
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 6.6e-120 434.9 395 55.2
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 1.9e-119 433.3 379 55.4
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 2.5e-119 433.0 377 54.4
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 1.2e-118 430.6 386 55.4
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 2.1e-118 429.9 406 53.9
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 1.8e-117 426.8 378 55.8
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 8.9e-117 424.5 402 53.5
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 2.6e-116 422.9 405 53.1
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 1.9e-114 416.8 359 55.7
CSS0012450 Camellia sinensis var. sinensis HOM05D006254 ORTHO05D007409 3.4e-108 396.0 258 70.2
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 7.5e-108 394.8 468 45.9
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 9.9e-108 394.4 391 51.4
Manes.12G085200 Manihot esculenta HOM05D006254 ORTHO05D007409 1.1e-106 391.0 258 69.8
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 9.2e-106 387.9 377 51.5
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 2.3e-104 383.3 424 46.9
Psat7g040840 Pisum sativum HOM05D006254 ORTHO05D007409 7.3e-103 378.3 312 56.7
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 1.7e-99 367.1 432 47.0
Rhsim09G0131600 Rhododendron simsii HOM05D006254 ORTHO05D007409 7.8e-97 358.2 265 63.8
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 8.7e-96 354.8 495 41.6
Migut.H00777 Erythranthe guttata HOM05D006254 ORTHO05D007409 1.4e-93 347.4 312 55.1
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 3.1e-93 346.3 376 49.2
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 4.0e-93 345.9 244 68.0
AL1G53850 Arabidopsis lyrata HOM05D006254 ORTHO05D007409 3.4e-92 342.8 256 59.8
HanXRQChr01g0017751 Helianthus annuus HOM05D006254 ORTHO05D007409 6.4e-91 338.6 360 47.8
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 3.2e-90 336.3 264 59.8
Actinidia34771 Actinidia chinensis HOM05D000969 ORTHO05D000899 2.8e-86 323.2 218 66.5
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 3.2e-82 309.7 212 69.3
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 7.6e-76 288.5 297 51.2
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 4.6e-73 279.3 382 43.7
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 6.0e-73 278.9 377 42.4
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 1.9e-66 257.3 231 59.7
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 7.9e-65 251.9 374 40.6
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 8.2e-62 241.9 205 56.6
vmacro10394 Vaccinium macrocarpon HOM05D006254 ORTHO05D007409 1.8e-56 224.2 218 53.7
ATR0584G026 Amborella trichopoda HOM05D006254 ORTHO05D007409 9.4e-50 201.8 188 52.1
Aa31LG5G9250 Aethionema arabicum HOM05D006254 ORTHO05D007409 4.4e-47 193.0 180 50.6
Hund06901 Selenicereus undatus HOM05D006254 ORTHO05D007409 7.4e-47 192.2 187 50.8
SEGI_09568 Sequoiadendron giganteum HOM05D006254 ORTHO05D007409 5.3e-45 186.0 234 42.7
Mapoly0003s0196 Marchantia polymorpha HOM05D006254 ORTHO05D007409 7.7e-44 182.2 415 27.5
MD00G1120300 Malus domestica HOM05D006254 ORTHO05D007409 3.2e-42 176.8 175 51.4
Haze_25431 Corylus avellana HOM05D006254 ORTHO05D007409 1.6e-41 174.5 139 61.2
Haze_25432 Corylus avellana HOM05D006254 ORTHO05D007409 1.6e-41 174.5 139 61.2
Hma1.2p1_0057F.1_g032170 Hydrangea macrophylla HOM05D006254 ORTHO05D007409 1.4e-40 171.4 113 64.6
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 1.1e-39 168.3 374 33.2
ClCG04G002460 Citrullus lanatus HOM05D006254 ORTHO05D007409 1.3e-38 164.9 104 80.8
AagrBONN_evm.TU.Sc2ySwM_117.2849 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.4e-37 161.4 257 32.7
AagrBONN_evm.TU.Sc2ySwM_228.4097 Anthoceros agrestis HOM05D006254 ORTHO05D007409 2.4e-37 160.6 255 34.1
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 2.7e-33 147.1 408 30.4
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 1.3e-30 138.3 145 51.7
Nn1g08418 Nelumbo nucifera HOM05D006254 ORTHO05D007409 1.6e-28 131.3 86 69.8
GSVIVG01038034001 Vitis vinifera HOM05D001605 ORTHO05D007409 2.0e-28 131.0 68 77.9
Cpa.g.sc138.23 Carica papaya HOM05D006254 ORTHO05D007409 3.2e-26 123.6 84 66.7
Actinidia38917 Actinidia chinensis HOM05D006254 ORTHO05D007409 9.4e-26 122.1 123 50.4
Glyma.08G005450 Glycine max HOM05D006254 ORTHO05D007409 1.3e-22 111.7 99 54.5
MD11G1077000 Malus domestica HOM05D006254 ORTHO05D007409 4.8e-22 109.8 104 53.8
AagrBONN_evm.TU.Sc2ySwM_228.4094 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.0e-19 102.1 264 25.0
MD00G1120800 Malus domestica HOM05D006254 ORTHO05D007409 3.8e-19 100.1 74 62.2
MD11G1078400 Malus domestica HOM05D006254 ORTHO05D007409 3.8e-19 100.1 74 62.2
HanXRQChr02g0035161 Helianthus annuus HOM05D006254 ORTHO05D007409 6.6e-19 99.4 123 43.9
CBR_g38543 Chara braunii HOM05D006254 ORTHO05D007409 2.5e-18 97.4 459 22.4
PSO170G1462 Papaver somniferum HOM05D006254 ORTHO05D007409 3.0e-16 90.5 83 53.0
HanXRQChr13g0399511 Helianthus annuus HOM05D006254 ORTHO05D007409 2.2e-14 84.3 92 50.0
BolC4t22791H Brassica oleracea HOM05D006254 ORTHO05D007409 8.3e-14 82.4 53 66.0
Os08g0123300 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 2.0e-07 61.2 93 36.6
AL1G53840 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 6.4e-06 56.2 103 38.8


User provided reference genes

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