Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 3.1e-87 325.1 166 100.0
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 9.2e-63 243.8 166 77.7
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.4e-58 229.2 171 75.4
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.4e-58 229.2 171 75.4
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 9.3e-55 217.2 169 73.4
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 3.9e-53 211.8 172 70.3
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 4.8e-43 178.3 130 76.2
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.3e-37 159.5 125 72.8
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.3e-37 159.5 125 72.8
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.3e-37 159.5 125 72.8
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 2.3e-37 159.5 149 59.7
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 2.3e-37 159.5 149 59.7
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 1.9e-36 156.4 149 58.4
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 2.5e-36 156.0 147 58.5
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 2.5e-36 156.0 161 55.9
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 5.6e-36 154.8 147 57.8
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 5.6e-36 154.8 167 58.7
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 3.7e-35 152.1 147 58.5
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 1.1e-34 150.6 163 55.2
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 4.0e-34 148.7 173 56.1
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 5.3e-34 148.3 156 58.3
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 5.3e-34 148.3 160 55.0
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 5.3e-34 148.3 152 57.9
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 6.9e-34 147.9 146 58.2
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.4e-33 145.6 153 57.5
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 1.0e-32 144.1 157 56.1
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.3e-32 143.7 158 55.7
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.3e-32 143.7 158 55.7
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.2e-32 142.9 158 55.7
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 4.9e-32 141.7 158 55.1
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 4.9e-32 141.7 149 55.0
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 8.4e-32 141.0 158 54.4
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 1.4e-31 140.2 165 50.3
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 3.2e-31 139.0 186 51.6
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 5.5e-31 138.3 151 54.3
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 7.1e-31 137.9 152 55.9
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.2e-30 137.1 147 55.1
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 4.6e-30 135.2 151 57.0
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 1.0e-29 134.0 169 47.9
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.0e-29 134.0 147 54.4
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.0e-29 134.0 147 54.4
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 1.3e-29 133.7 156 53.8
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 3.0e-29 132.5 153 52.3
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 3.0e-29 132.5 153 52.3
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 5.1e-29 131.7 140 54.3
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 6.7e-29 131.3 153 54.9
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 6.7e-29 131.3 159 54.7
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 1.5e-28 130.2 173 52.0
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 1.5e-28 130.2 154 51.3
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 1.9e-28 129.8 163 51.5
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 4.3e-28 128.6 165 54.5
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 4.3e-28 128.6 149 52.3
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 7.4e-28 127.9 152 52.0
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 7.4e-28 127.9 145 52.4
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 9.6e-28 127.5 170 48.8
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.3e-27 127.1 164 47.6
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 2.1e-27 126.3 174 49.4
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 3.7e-27 125.6 156 53.8
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 3.7e-27 125.6 170 46.5
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.1e-26 124.0 147 51.7
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.1e-26 124.0 147 51.7
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 1.1e-26 124.0 156 50.6
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 4.0e-26 122.1 155 50.3
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 6.9e-26 121.3 170 49.4
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 6.9e-26 121.3 170 48.2
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 9.0e-26 120.9 171 48.5
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 1.2e-25 120.6 136 53.7
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 1.5e-25 120.2 149 53.7
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 1.5e-25 120.2 168 47.6
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 2.6e-25 119.4 179 48.6
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 3.4e-25 119.0 169 50.9
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 3.4e-25 119.0 162 48.1
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 4.5e-25 118.6 149 49.0
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 5.8e-25 118.2 184 45.1
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 7.6e-25 117.9 166 46.4
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 2.2e-24 116.3 174 44.3
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 3.8e-24 115.5 145 51.0
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 6.5e-24 114.8 190 44.2
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 6.5e-24 114.8 190 44.2
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 6.5e-24 114.8 171 49.1
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 8.4e-24 114.4 165 49.1
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 1.9e-23 113.2 171 46.8
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 1.9e-23 113.2 182 44.0
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 1.9e-23 113.2 149 49.0
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 2.5e-23 112.8 169 46.7
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 2.5e-23 112.8 171 46.2
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 5.5e-23 111.7 187 42.2
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 9.3e-23 110.9 155 47.1
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 9.3e-23 110.9 153 49.0
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 1.6e-22 110.2 163 47.9
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 7.9e-22 107.8 163 46.6
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 1.0e-21 107.5 181 44.8
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 2.3e-21 106.3 179 44.7
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 5.1e-21 105.1 180 43.9
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 5.1e-21 105.1 190 41.6
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 8.7e-21 104.4 163 44.2
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 8.7e-21 104.4 150 51.3
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 1.5e-20 103.6 175 44.0
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 1.5e-20 103.6 146 47.3
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 2.5e-20 102.8 178 43.3
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 4.3e-20 102.1 155 47.1
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 7.4e-20 101.3 179 42.5
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 7.4e-20 101.3 186 43.5
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 7.4e-20 101.3 148 48.6
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 9.7e-20 100.9 166 44.6
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 9.7e-20 100.9 171 45.0
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 9.7e-20 100.9 168 45.8
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 9.7e-20 100.9 157 45.9
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 1.3e-19 100.5 169 45.0
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 1.3e-19 100.5 158 44.3
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 2.2e-19 99.8 168 44.0
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 4.8e-19 98.6 160 43.8
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 6.3e-19 98.2 171 45.0
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 6.3e-19 98.2 171 45.0
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 6.3e-19 98.2 170 43.5
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 8.2e-19 97.8 165 44.2
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.4e-18 97.1 167 42.5
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 2.4e-18 96.3 160 41.9
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 4.1e-18 95.5 167 39.5
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 4.1e-18 95.5 163 42.3
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 2.0e-17 93.2 163 42.3
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 5.9e-17 91.7 155 43.2
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 1.3e-16 90.5 165 44.8
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 8.5e-16 87.8 157 40.8
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 3.3e-12 75.9 88 56.8
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 4.3e-12 75.5 165 36.4
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 9.7e-12 74.3 169 36.7
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 9.7e-12 74.3 169 36.7
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.3e-11 73.9 117 42.7
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.7e-11 72.4 143 38.5
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 1.1e-10 70.9 141 39.7
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 2.4e-10 69.7 61 59.0
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.3e-10 68.6 120 41.7
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 9.1e-10 67.8 99 43.4
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.2e-09 67.4 123 41.5
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.2e-09 67.4 129 41.9
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.2e-09 67.4 90 45.6
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.2e-09 67.4 129 41.9
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.2e-09 67.4 90 45.6
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 1.2e-09 67.4 128 42.2
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 1.5e-09 67.0 148 39.2
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 1.5e-09 67.0 79 49.4
SalBow1G2562 Salvia bowleyana HOM05D005006 ORTHO05D005903 2.0e-09 66.6 112 42.0
SalBow1G1740 Salvia bowleyana HOM05D005006 ORTHO05D005903 2.6e-09 66.2 112 42.0
CSS0044713 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.1e-07 60.8 146 37.7
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 4.2e-07 58.9 85 50.6
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 1.2e-06 57.4 151 35.1
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 1.6e-06 57.0 65 53.8
Os06g0525200 Oryza sativa ssp. japonica HOM05D005006 ORTHO05D005903 3.6e-06 55.8 154 32.5


User provided reference genes

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