Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 1.9e-153 545.8 272 100.0
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 1.8e-100 369.8 281 68.0
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 2.6e-99 365.9 274 67.2
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 4.5e-99 365.2 275 66.9
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 4.5e-99 365.2 270 72.6
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 2.3e-66 256.5 282 48.9
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 1.8e-63 246.9 251 51.0
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 2.7e-59 233.0 278 46.4
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 2.7e-59 233.0 278 46.4
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 5.9e-59 231.9 278 46.0
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 3.0e-58 229.6 237 50.2
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.8e-55 220.3 251 46.6
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 1.8e-55 220.3 257 45.9
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 2.3e-55 219.9 252 47.2
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 4.0e-55 219.2 249 45.8
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 3.4e-54 216.1 236 46.6
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 9.8e-54 214.5 251 45.4
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 4.1e-52 209.1 252 44.4
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 4.1e-52 209.1 238 45.0
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 6.0e-51 205.3 253 43.5
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 1.3e-50 204.1 255 43.9
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 2.3e-50 203.4 255 43.5
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 6.6e-50 201.8 247 48.2
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 6.6e-50 201.8 254 47.6
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 8.6e-50 201.4 251 45.0
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 3.3e-49 199.5 270 40.4
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 4.7e-48 195.7 257 42.8
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 6.2e-48 195.3 250 43.6
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 6.2e-48 195.3 250 42.4
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 1.1e-47 194.5 285 38.6
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 3.1e-47 193.0 244 41.0
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 4.0e-47 192.6 240 45.0
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 5.2e-47 192.2 267 39.3
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 2.6e-46 189.9 248 41.1
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 7.5e-46 188.3 261 41.4
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 7.5e-46 188.3 250 46.4
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 9.8e-46 188.0 286 40.2
Hma1.2p1_0529F.1_g173240 Hydrangea macrophylla HOM05D002705 ORTHO05D009765 3.7e-45 186.0 234 45.3
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 3.7e-45 186.0 258 42.2
Thecc.01G162500 Theobroma cacao HOM05D002705 ORTHO05D009765 4.9e-45 185.7 288 42.4
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 1.6e-43 180.6 267 38.2
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 3.5e-43 179.5 285 38.2
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 1.7e-42 177.2 292 41.1
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 1.7e-42 177.2 290 39.7
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 2.3e-42 176.8 258 38.8
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 6.6e-42 175.3 253 41.9
Duzib264G0970 Durio zibethinus HOM05D002705 ORTHO05D009765 1.2e-40 171.0 256 39.1
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 2.8e-40 169.9 269 39.8
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 8.1e-40 168.3 255 41.2
FAN02G0759 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.2e-38 164.5 199 47.2
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 2.0e-38 163.7 219 40.6
BcaC02g12424 Brassica carinata HOM05D002705 ORTHO05D009765 9.9e-38 161.4 259 39.0
BolC4t22036H Brassica oleracea HOM05D002705 ORTHO05D009765 9.9e-38 161.4 259 39.0
DCAR_009797 Daucus carota HOM05D002705 ORTHO05D009765 1.3e-37 161.0 261 38.3
Gohir.D04G036300 Gossypium hirsutum HOM05D002705 ORTHO05D009765 2.9e-37 159.8 308 37.7
Gorai.012G041100 Gossypium raimondii HOM05D002705 ORTHO05D009765 2.9e-37 159.8 308 37.7
C04p04000 Brassica napus HOM05D002705 ORTHO05D009765 6.4e-37 158.7 259 37.8
CARHR137970 Cardamine hirsuta HOM05D002705 ORTHO05D009765 8.4e-37 158.3 255 38.0
Gohir.A05G379200 Gossypium hirsutum HOM05D002705 ORTHO05D009765 8.4e-37 158.3 261 39.5
PSO675G7613 Papaver somniferum HOM05D002705 ORTHO05D009765 8.4e-37 158.3 253 37.2
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 1.1e-36 157.9 270 37.0
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 1.1e-36 157.9 251 37.8
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.4e-36 157.5 252 34.5
AT2G42900 Arabidopsis thaliana HOM05D002705 ORTHO05D009765 1.9e-36 157.1 266 37.6
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 1.9e-36 157.1 259 37.8
Thhalv10017067m.g Eutrema salsugineum HOM05D002705 ORTHO05D009765 1.9e-36 157.1 258 38.8
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 5.4e-36 155.6 206 43.2
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 9.2e-36 154.8 251 35.5
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 1.2e-35 154.5 254 38.2
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.6e-35 154.1 252 34.5
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 3.5e-35 152.9 239 38.5
MBI10_g34778_MAGBIO Magnolia biondii HOM05D002705 ORTHO05D009765 1.7e-34 150.6 181 43.6
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 3.3e-33 146.4 206 40.3
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 4.3e-33 146.0 202 38.1
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 6.2e-32 142.1 195 39.0
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 4.9e-29 132.5 255 30.6
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 4.9e-29 132.5 236 33.5
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 6.4e-29 132.1 247 33.6
Zm00001eb297100 Zea mays HOM05D002705 ORTHO05D009765 1.4e-28 131.0 260 32.7
CDE09G0375 Ceratophyllum demersum HOM05D002705 ORTHO05D009765 1.2e-27 127.9 227 33.5
Zm00001eb344730 Zea mays HOM05D002705 ORTHO05D009765 1.3e-26 124.4 255 32.9
RcHm_v2.0_Chr2g0151591 Rosa chinensis HOM05D002705 ORTHO05D009765 8.7e-26 121.7 174 42.0
PSO017G2465 Papaver somniferum HOM05D002705 ORTHO05D009765 1.5e-25 120.9 249 30.9
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 2.5e-25 120.2 128 45.3
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 1.3e-24 117.9 247 32.0
AL4G41540 Arabidopsis lyrata HOM05D002705 ORTHO05D009765 9.9e-22 108.2 179 38.0
TWI59G0299 Tripterygium wilfordii HOM05D002705 ORTHO05D009765 1.1e-20 104.8 170 37.1
unitig_62.g23106 Utricularia gibba HOM05D002705 ORTHO05D009765 2.8e-16 90.1 175 37.1
SalBow5G4254 Salvia bowleyana HOM05D002705 ORTHO05D009765 6.2e-16 89.0 314 29.0
RcHm_v2.0_Chr2g0151581 Rosa chinensis HOM05D002705 ORTHO05D009765 4.5e-14 82.8 91 44.0
CAN.G1546.3 Capsicum annuum HOM05D000541 ORTHO05D000137 2.2e-13 80.5 133 41.4
ECA248G0079 Erigeron canadensis HOM05D002705 ORTHO05D009765 6.4e-13 79.0 115 36.5
Glyma.10G261200 Glycine max HOM05D001524 ORTHO05D001392 2.1e-11 73.9 215 24.7
Ca_11066_v3 Cicer arietinum L. HOM05D001524 ORTHO05D001392 4.6e-11 72.8 219 27.4
Lj9P323T45 Lonicera japonica HOM05D001524 ORTHO05D001392 5.1e-10 69.3 202 26.7
Peaxi162Scf00016g02428 Petunia axillaris HOM05D001524 ORTHO05D001392 5.1e-10 69.3 202 26.7
AUR62010321 Chenopodium quinoa HOM05D001524 ORTHO05D001392 6.7e-10 68.9 201 26.4
Glyma.16G214300 Glycine max HOM05D000005 ORTHO05D001392 6.7e-10 68.9 216 23.6
SMO144G0101 Selaginella moellendorffii HOM05D001524 ORTHO05D001392 6.7e-10 68.9 206 26.2
SMO144G0004 Selaginella moellendorffii HOM05D001524 ORTHO05D001392 8.7e-10 68.6 203 25.6
CiPaw.05G012600 Carya illinoinensis HOM05D001524 ORTHO05D001392 1.5e-09 67.8 221 22.6
Cc02_g19330 Coffea canephora HOM05D001524 ORTHO05D001392 1.9e-09 67.4 241 24.9
CsaV3_7G008230 Cucumis sativus L. HOM05D001524 ORTHO05D001392 1.9e-09 67.4 209 25.4
Glyma.20G130000 Glycine max HOM05D001524 ORTHO05D001392 1.9e-09 67.4 229 26.2
Cc03_g14200 Coffea canephora HOM05D001524 ORTHO05D001392 2.5e-09 67.0 227 25.1
AUR62010320 Chenopodium quinoa HOM05D001524 ORTHO05D001392 4.3e-09 66.2 200 25.0
Zm00001eb044960 Zea mays HOM05D001524 ORTHO05D001392 4.3e-09 66.2 230 26.1
Nn3g18309 Nelumbo nucifera HOM05D001524 ORTHO05D001392 5.6e-09 65.9 240 24.6
Oeu018582.1 Olea europaea HOM05D001524 ORTHO05D001392 5.6e-09 65.9 206 24.8
SalBow6G1183 Salvia bowleyana HOM05D001524 ORTHO05D001392 7.4e-09 65.5 228 25.4
Lj5g0022504 Lotus japonicus HOM05D001524 ORTHO05D001392 9.6e-09 65.1 220 25.9
MELO3C018483.2 Cucumis melo HOM05D001524 ORTHO05D001392 1.3e-08 64.7 192 28.1
Solyc01g107540.4 Solanum lycopersicum HOM05D001524 ORTHO05D001392 1.3e-08 64.7 202 22.3
Prupe.8G136200 Prunus persica HOM05D001524 ORTHO05D001392 1.6e-08 64.3 202 24.8
Ah.01g018330 Amaranthus hybridus HOM05D001524 ORTHO05D001392 2.1e-08 63.9 200 26.0
ClCG02G006440 Citrullus lanatus HOM05D001524 ORTHO05D001392 2.1e-08 63.9 197 26.4
MD05G1090800 Malus domestica HOM05D001524 ORTHO05D001392 2.1e-08 63.9 201 25.4
Cfa004595 Carpinus fangiana HOM05D001524 ORTHO05D001392 2.8e-08 63.5 211 23.7
FvH4_2g05010 Fragaria vesca HOM05D001524 ORTHO05D001392 2.8e-08 63.5 226 25.7
PGR042G1104 Punica granatum HOM05D001524 ORTHO05D001392 2.8e-08 63.5 228 23.7
PGSC0003DMG400025765 Solanum tuberosum HOM05D001524 ORTHO05D001392 3.7e-08 63.2 204 23.5
CsaV3_7G008220 Cucumis sativus L. HOM05D001524 ORTHO05D001392 4.8e-08 62.8 243 24.7
CsaV3_7G008240 Cucumis sativus L. HOM05D001524 ORTHO05D001392 4.8e-08 62.8 210 24.8
ATR0796G232 Amborella trichopoda HOM05D001524 ORTHO05D001392 6.2e-08 62.4 218 24.3
Cfa021156 Carpinus fangiana HOM05D001524 ORTHO05D001392 6.2e-08 62.4 218 23.9
Lsat_1_v5_gn_9_112100 Lactuca sativa HOM05D001524 ORTHO05D001392 6.2e-08 62.4 208 22.6
Lj1g0018373 Lotus japonicus HOM05D001524 ORTHO05D001392 6.2e-08 62.4 207 25.6
SEGI_18471 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 6.2e-08 62.4 232 24.6
Zm00001eb221080 Zea mays HOM05D001524 ORTHO05D001392 8.1e-08 62.0 228 27.6
CiPaw.05G012500 Carya illinoinensis HOM05D001524 ORTHO05D001392 1.1e-07 61.6 230 23.0
ClCG02G006460 Citrullus lanatus HOM05D001524 ORTHO05D001392 1.1e-07 61.6 211 24.6
Oeu044279.1 Olea europaea HOM05D001524 ORTHO05D001392 1.1e-07 61.6 228 21.9
Prupe.8G136100 Prunus persica HOM05D001524 ORTHO05D001392 1.1e-07 61.6 224 23.2
RcHm_v2.0_Chr6g0254831 Rosa chinensis HOM05D001524 ORTHO05D001392 1.1e-07 61.6 211 23.7
SEGI_17993 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 1.1e-07 61.6 215 23.7
Sopen01g030690 Solanum pennellii HOM05D001524 ORTHO05D001392 1.1e-07 61.6 202 23.3
Migut.B00394 Erythranthe guttata HOM05D001524 ORTHO05D001392 1.4e-07 61.2 227 23.3
Sed0022824 Sechium edule HOM05D001524 ORTHO05D001392 1.4e-07 61.2 200 25.5
ECA240G1859 Erigeron canadensis HOM05D001524 ORTHO05D001392 1.8e-07 60.8 205 24.9
Zm00001eb221040 Zea mays HOM05D001524 ORTHO05D001392 1.8e-07 60.8 203 26.1
MD10G1098800 Malus domestica HOM05D001524 ORTHO05D001392 2.4e-07 60.5 204 25.0
Nitab4.5_0004326g0040 Nicotiana tabacum HOM05D001524 ORTHO05D001392 2.4e-07 60.5 204 24.5
VMungo0720G2083 Vigna mungo HOM05D001524 ORTHO05D001392 2.4e-07 60.5 211 26.1
EL10Ac9g22263 Beta vulgaris HOM05D001524 ORTHO05D001392 3.1e-07 60.1 179 26.3
ECA240G3237 Erigeron canadensis HOM05D001524 ORTHO05D001392 3.1e-07 60.1 234 22.2
Sp3g28460 Schrenkiella parvula HOM05D001524 ORTHO05D001392 3.1e-07 60.1 216 20.8
AL3G46920 Arabidopsis lyrata HOM05D001524 ORTHO05D001392 4.0e-07 59.7 208 23.6
Eucgr.G01335 Eucalyptus grandis HOM05D001524 ORTHO05D001392 4.0e-07 59.7 226 24.3
Eucgr.H03199 Eucalyptus grandis HOM05D001524 ORTHO05D001392 4.0e-07 59.7 209 25.8
MD10G1147400 Malus domestica HOM05D001524 ORTHO05D001392 4.0e-07 59.7 204 25.0
Oeu037254.1 Olea europaea HOM05D001524 ORTHO05D001392 4.0e-07 59.7 202 23.3
Atru.chr5.2558 Acer truncatum HOM05D001524 ORTHO05D001392 5.3e-07 59.3 219 23.3
Potri.001G299400 Populus trichocarpa HOM05D001524 ORTHO05D001392 5.3e-07 59.3 223 24.7
SEGI_18619 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 9.0e-07 58.5 222 20.7
Lsat_1_v5_gn_9_112160 Lactuca sativa HOM05D001524 ORTHO05D001392 1.2e-06 58.2 229 21.8
Nitab4.5_0011634g0010 Nicotiana tabacum HOM05D001524 ORTHO05D001392 1.2e-06 58.2 204 22.1
CAN.G606.6 Capsicum annuum HOM05D001524 ORTHO05D001392 1.5e-06 57.8 202 23.3
THA.LOC104819552 Tarenaya hassleriana HOM05D001524 ORTHO05D001392 1.5e-06 57.8 204 22.5
AT2G15220 Arabidopsis thaliana HOM05D001524 ORTHO05D001392 2.0e-06 57.4 202 22.3
Nitab4.5_0001143g0020 Nicotiana tabacum HOM05D001524 ORTHO05D001392 2.0e-06 57.4 197 23.4
HanXRQChr03g0070331 Helianthus annuus HOM05D001524 ORTHO05D001392 2.6e-06 57.0 218 21.6
Sabra09G0073000 Salix brachista HOM05D001524 ORTHO05D001392 2.6e-06 57.0 204 22.5
PGSC0003DMG400006276 Solanum tuberosum HOM05D001524 ORTHO05D001392 2.6e-06 57.0 202 22.3
Sopen01g049740 Solanum pennellii HOM05D000002 ORTHO05D000001 7.6e-06 55.5 170 22.4
Eucgr.G01330 Eucalyptus grandis HOM05D001524 ORTHO05D001392 1.0e-05 55.1 209 25.8
Peaxi162Scf00016g02429 Petunia axillaris HOM05D001524 ORTHO05D001392 1.0e-05 55.1 204 23.5
PGR042G2205 Punica granatum HOM05D001524 ORTHO05D001392 1.0e-05 55.1 233 23.6


User provided reference genes

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