Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 3.0e-145 518.5 259 100.0
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 3.1e-113 412.1 297 73.4
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.4e-102 376.7 297 68.7
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 5.5e-70 268.5 284 54.6
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 4.0e-65 252.3 291 50.9
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 5.3e-65 251.9 297 50.5
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 6.9e-65 251.5 298 50.0
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 4.5e-64 248.8 297 50.2
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 1.0e-63 247.7 264 54.2
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 4.2e-62 242.3 291 49.1
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 5.5e-62 241.9 266 51.9
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 6.0e-61 238.4 291 49.5
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 1.8e-60 236.9 298 48.7
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 6.7e-60 235.0 291 49.5
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 1.9e-59 233.4 291 47.8
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 3.3e-59 232.6 282 49.6
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.3e-58 230.7 291 48.1
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.6e-58 230.3 293 48.5
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 4.8e-58 228.8 298 48.0
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 2.4e-57 226.5 291 48.5
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.1e-57 225.7 291 47.4
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 4.1e-57 225.7 291 47.4
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.3e-57 225.3 277 48.4
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 1.2e-56 224.2 291 46.4
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.5e-56 223.8 293 48.1
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 2.6e-56 223.0 273 48.4
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 5.9e-56 221.9 282 48.6
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.7e-55 220.3 293 46.8
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 2.9e-55 219.5 284 48.6
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 3.8e-55 219.2 295 46.8
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 2.5e-54 216.5 279 46.2
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 4.2e-54 215.7 265 48.3
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 2.1e-53 213.4 286 46.2
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 1.4e-52 210.7 280 48.9
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 3.0e-52 209.5 292 45.9
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 2.0e-51 206.8 244 50.4
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 3.7e-50 202.6 300 45.3
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 8.2e-50 201.4 262 46.6
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 3.1e-49 199.5 298 45.3
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 4.1e-49 199.1 261 47.1
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 9.1e-49 198.0 289 44.6
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 7.7e-48 194.9 289 46.4
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.0e-47 194.5 283 42.4
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 1.7e-47 193.7 288 44.4
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.2e-47 193.4 264 45.8
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 4.2e-46 189.1 293 42.0
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 1.6e-45 187.2 299 42.5
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 1.6e-45 187.2 278 46.0
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 1.3e-42 177.6 256 45.3
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.3e-42 177.6 291 44.3
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.7e-42 177.2 298 41.3
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 6.5e-39 165.2 282 43.3
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 3.2e-38 162.9 280 40.7
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.6e-37 160.6 225 46.7
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.6e-37 160.6 280 41.8
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 2.7e-37 159.8 263 39.9
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 4.7e-37 159.1 264 40.2
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 3.0e-36 156.4 295 40.0
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 3.9e-36 156.0 268 39.2
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.2e-36 155.6 249 40.6
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 5.2e-36 155.6 292 38.0
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 2.6e-35 153.3 256 41.0
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 3.3e-35 152.9 268 39.9
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 9.7e-35 151.4 283 39.6
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 8.2e-34 148.3 187 48.1
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 4.5e-32 142.5 204 43.1
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 7.7e-32 141.7 292 37.0
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.3e-31 141.0 142 58.5
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 2.2e-31 140.2 292 36.6
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 2.9e-31 139.8 257 40.9
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 5.0e-31 139.0 291 35.7
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.1e-30 137.9 146 56.2
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.1e-30 137.9 272 36.8
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.1e-30 137.9 292 37.0
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.9e-30 137.1 312 34.6
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 1.9e-30 137.1 145 56.6
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.2e-30 136.0 141 57.4
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 1.2e-29 134.4 242 38.8
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.2e-29 134.4 146 54.8
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 1.2e-29 134.4 219 39.7
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.6e-29 134.0 138 57.2
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 2.3e-28 130.2 291 35.7
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 8.8e-28 128.3 266 35.7
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 6.3e-26 122.1 294 33.7
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 1.7e-23 114.0 278 35.6
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.9e-23 113.2 254 35.0
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 2.9e-23 113.2 211 39.8
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 5.0e-23 112.5 290 31.4
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 1.1e-22 111.3 282 30.5
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 1.5e-22 110.9 262 34.7
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 1.9e-22 110.5 266 33.8
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 5.5e-22 109.0 276 32.2
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 1.2e-21 107.8 258 36.0
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 1.6e-21 107.5 156 44.9
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 3.6e-21 106.3 250 36.0
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 3.6e-21 106.3 225 36.4
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 4.7e-21 105.9 282 31.9
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 1.4e-20 104.4 199 38.7
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 2.3e-20 103.6 292 33.2
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 3.0e-20 103.2 249 36.9
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 3.0e-20 103.2 222 40.1
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 4.0e-20 102.8 97 60.8
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 6.8e-20 102.1 257 32.7
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 6.8e-20 102.1 273 30.8
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 8.8e-20 101.7 275 33.5
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.5e-19 100.9 279 30.8
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 1.5e-19 100.9 279 30.8
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 3.4e-19 99.8 274 31.8
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 4.4e-19 99.4 77 64.9
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 4.4e-19 99.4 264 35.6
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 4.4e-19 99.4 280 32.9
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 7.5e-19 98.6 282 34.0
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 9.8e-19 98.2 193 37.8
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 2.2e-18 97.1 195 37.9
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 2.8e-18 96.7 277 30.3
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.8e-17 94.0 157 38.2
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 1.8e-17 94.0 77 64.9
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 7.0e-17 92.0 250 32.0
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 1.2e-16 91.3 71 70.4
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 2.7e-16 90.1 73 68.5
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 7.7e-16 88.6 73 67.1
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 7.7e-16 88.6 89 55.1
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 1.0e-15 88.2 91 58.2
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.0e-15 88.2 219 38.4
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 1.3e-15 87.8 264 31.1
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 2.3e-15 87.0 170 37.1
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 2.9e-15 86.7 73 65.8
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 3.8e-15 86.3 281 31.7
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 8.6e-15 85.1 247 27.9
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.1e-14 84.7 239 31.0
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.1e-14 84.7 215 33.0
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 1.5e-14 84.3 268 30.2
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 1.5e-14 84.3 242 31.4
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 1.9e-14 84.0 168 34.5
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 3.3e-14 83.2 265 29.1
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.2e-14 82.8 271 32.1
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 4.2e-14 82.8 253 32.0
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 4.2e-14 82.8 82 52.4
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 4.2e-14 82.8 138 39.1
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.8e-13 80.1 273 32.2
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 4.7e-13 79.3 266 29.7
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 6.1e-13 79.0 188 35.6
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.0e-12 78.2 271 32.1
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 1.0e-12 78.2 273 28.6
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 3.0e-12 76.6 67 56.7
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.5e-11 74.3 279 29.0
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 1.5e-11 74.3 147 37.4
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 2.6e-11 73.6 308 26.0
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 4.4e-11 72.8 75 50.7
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 7.5e-11 72.0 123 37.4
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.3e-10 71.2 58 62.1
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 1.7e-10 70.9 234 29.9
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 2.2e-10 70.5 278 30.6
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 2.8e-10 70.1 88 44.3
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 3.7e-10 69.7 207 30.4
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 3.7e-10 69.7 106 36.8
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 3.7e-10 69.7 256 30.1
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 8.3e-10 68.6 67 55.2
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 8.3e-10 68.6 189 31.2
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 1.4e-09 67.8 71 46.5
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.4e-09 67.8 184 34.8
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 4.1e-09 66.2 78 50.0
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 9.2e-09 65.1 256 28.5
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 2.0e-08 63.9 251 28.7
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 2.7e-08 63.5 170 30.6
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 5.9e-08 62.4 252 29.0
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 5.9e-08 62.4 68 48.5
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.0e-07 61.6 266 27.4
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 1.3e-07 61.2 79 48.1
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.7e-07 60.8 112 35.7
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.9e-06 57.4 80 47.5
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 2.5e-06 57.0 64 46.9


User provided reference genes

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