Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 0.0e+00 1570.1 1109 100.0
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 0.0e+00 1273.1 1104 83.6
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 0.0e+00 1242.6 1097 82.8
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 0.0e+00 1147.1 1104 79.7
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 0.0e+00 1089.7 1037 76.3
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 1.3e-205 721.1 1116 62.5
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 8.3e-200 701.8 1121 62.4
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 4.2e-196 689.5 1170 59.8
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 1.1e-188 664.8 1139 55.6
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 7.5e-185 652.1 1139 52.9
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 2.1e-179 634.0 1101 57.5
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 8.9e-170 602.1 1055 58.4
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 2.6e-169 600.5 1107 53.0
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 3.2e-167 593.6 1114 52.7
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 9.2e-167 592.0 1087 58.5
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 7.8e-166 589.0 1130 57.9
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 2.5e-164 583.9 1125 56.6
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 8.9e-162 575.5 1118 56.9
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 3.4e-161 573.5 1127 56.4
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 2.7e-158 563.9 1123 56.5
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 6.0e-158 562.8 1112 56.3
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 1.0e-157 562.0 1144 45.9
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 1.7e-157 561.2 1119 55.5
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 8.7e-157 558.9 1112 55.2
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 8.7e-157 558.9 1121 56.2
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 1.9e-156 557.8 1053 59.6
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 5.6e-156 556.2 1128 55.9
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 1.6e-155 554.7 1146 56.5
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 2.6e-153 547.4 1124 50.2
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 1.7e-152 544.7 1118 51.3
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 2.7e-150 537.3 1126 49.8
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 5.6e-148 529.6 1182 51.5
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 1.6e-147 528.1 1183 52.1
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 3.1e-146 523.9 1106 50.5
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 4.0e-146 523.5 1128 55.6
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 4.5e-145 520.0 1123 54.9
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 2.2e-144 517.7 1201 47.3
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 3.8e-144 516.9 1116 56.1
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 1.0e-141 508.8 1148 56.8
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 5.1e-141 506.5 1112 55.3
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 1.5e-140 505.0 1111 54.9
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 3.3e-140 503.8 1117 54.4
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 4.3e-140 503.4 1128 54.0
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 5.6e-140 503.1 1132 55.0
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 7.4e-140 502.7 1129 53.6
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 3.7e-139 500.4 1111 54.8
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 7.6e-137 492.7 1122 54.3
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 1.7e-136 491.5 1208 46.7
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 1.4e-135 488.4 1141 54.4
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 4.6e-134 483.4 1115 54.0
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 6.0e-134 483.0 1099 53.9
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 1.3e-133 481.9 1129 54.0
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 3.0e-133 480.7 1121 54.1
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 3.0e-133 480.7 1112 54.9
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 1.5e-132 478.4 1127 53.1
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 9.6e-132 475.7 1117 53.9
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 1.2e-129 468.8 1115 54.5
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 5.8e-129 466.5 712 73.3
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 8.4e-128 462.6 1091 54.4
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 1.1e-127 462.2 1136 48.9
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 1.4e-127 461.8 1031 56.7
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 3.5e-126 457.2 1114 53.3
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 7.9e-126 456.1 1078 53.3
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 1.3e-125 455.3 1106 52.5
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 6.7e-125 453.0 1122 52.7
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 8.7e-125 452.6 1099 53.7
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 1.1e-124 452.2 1173 51.8
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 7.4e-124 449.5 823 62.1
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 1.8e-122 444.9 1067 53.0
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 4.1e-122 443.7 1177 51.4
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 5.3e-122 443.4 829 56.8
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 6.9e-122 443.0 1094 53.7
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 1.5e-121 441.8 817 59.7
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 1.0e-120 439.1 1027 56.4
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 1.0e-117 429.1 1121 53.1
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 6.7e-117 426.4 967 45.3
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 3.7e-115 420.6 860 61.9
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 1.4e-114 418.7 1176 51.6
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 2.4e-114 417.9 1097 52.6
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 1.7e-112 411.8 1159 45.1
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 1.2e-110 405.6 1124 51.2
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.6e-110 405.2 1140 50.1
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.3e-109 401.4 688 70.1
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 8.8e-109 399.4 1130 50.3
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 1.1e-108 399.1 1107 51.6
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 1.8e-106 391.7 1145 49.6
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 3.1e-106 391.0 697 62.4
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 9.1e-106 389.4 606 69.1
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 5.9e-105 386.7 1148 49.5
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 1.5e-103 382.1 1159 50.3
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 9.4e-103 379.4 1191 48.3
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.3e-99 369.0 759 58.5
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 1.4e-98 365.5 737 51.6
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 8.5e-96 356.3 831 60.3
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 6.8e-93 346.7 1128 43.9
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 7.5e-92 343.2 1017 53.1
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 8.3e-67 260.0 257 51.8
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 3.7e-51 208.0 157 65.0
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 1.1e-47 196.4 236 45.3
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 3.6e-46 191.4 674 44.8
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 8.1e-46 190.3 721 44.7
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 1.4e-45 189.5 738 42.0
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 1.5e-44 186.0 255 84.7
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 4.2e-42 177.9 296 64.9
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 5.4e-42 177.6 297 72.4
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.2e-41 176.4 271 41.0
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 2.1e-41 175.6 277 39.7
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 3.5e-41 174.9 123 69.1
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 4.3e-39 167.9 689 57.9
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 4.9e-35 154.5 704 45.5
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 8.4e-35 153.7 270 35.2
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.7e-32 146.0 128 62.5
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 3.0e-32 145.2 251 76.9
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.3e-30 139.8 238 38.2
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 3.1e-29 135.2 119 60.5
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 4.0e-29 134.8 287 32.4
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.9e-27 128.6 162 43.2
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 1.0e-24 120.2 107 57.0
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 5.1e-24 117.9 655 50.7
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 2.1e-22 112.5 109 52.3
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.5e-20 106.3 94 50.0
CDE09G0717 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 3.4e-20 105.1 97 78.4
QL11p047023 Quercus lobata HOM05D005996 ORTHO05D007507 3.0e-16 92.0 143 42.7
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 8.2e-14 84.0 249 28.5
SMO106G0001 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 1.6e-06 59.7 60 50.0


User provided reference genes

Program Settings