Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 2770.3 1391 100.0
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 2167.1 1392 79.0
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 2120.1 1339 80.6
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1812.0 1178 78.8
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1586.2 1399 59.3
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1562.0 1399 58.5
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1536.9 1402 58.3
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1533.9 1408 56.8
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1530.4 1399 58.0
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1491.1 1402 57.0
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1490.7 1433 56.2
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1471.8 1349 57.5
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1464.1 1403 55.7
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1456.0 1421 55.1
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1452.6 1411 56.4
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1451.4 1403 55.3
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1450.3 1404 55.3
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1449.5 1399 55.4
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1447.2 1401 55.2
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1446.8 1425 55.4
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1446.0 1412 55.1
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1444.1 1421 54.9
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1438.7 1411 55.0
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1434.1 1373 55.7
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1424.5 1422 54.5
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1415.2 1405 54.5
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1407.5 1504 51.7
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1394.0 1437 53.0
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1390.9 1400 53.8
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1388.6 1413 53.9
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1370.1 1495 51.2
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1351.3 1402 52.1
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1348.2 1413 51.4
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1345.1 1410 51.8
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1339.7 1408 51.8
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1335.5 1409 52.9
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1333.9 1407 51.5
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1333.2 1402 51.5
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1329.3 1407 52.5
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1328.2 1408 51.5
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1327.4 1413 51.3
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1324.3 1404 51.4
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1324.3 1405 51.2
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1321.6 1404 51.7
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1321.6 1405 51.0
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1320.1 1394 51.1
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1317.0 1404 52.1
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1314.7 1397 51.8
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1314.3 1427 50.8
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1312.0 1422 50.8
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1311.6 1408 50.9
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1308.9 1405 51.2
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1306.6 1391 51.1
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1306.6 1408 50.9
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1305.8 1411 52.5
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1305.4 1423 51.4
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1302.3 1409 51.7
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1302.3 1409 51.7
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1300.0 1408 50.6
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1293.5 1403 51.0
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1290.8 1428 51.1
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1290.4 1398 51.1
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1290.0 1416 49.8
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1280.0 1421 49.8
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1279.6 1397 50.4
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1278.5 1420 49.4
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1276.2 1427 49.5
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1268.1 1419 50.8
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1261.9 1434 48.0
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1256.5 1436 49.9
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1255.4 1444 49.7
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1249.6 1404 48.4
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1248.8 1430 48.4
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1240.3 1239 54.6
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1238.4 1424 48.9
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1234.6 1457 48.7
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1226.8 1419 49.3
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1224.5 1426 48.9
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1219.5 1412 47.6
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1208.4 1413 47.6
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1203.7 1407 48.1
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1199.5 1408 47.8
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1190.6 1408 46.5
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1190.6 1341 50.0
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1182.9 1376 48.0
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1169.8 1400 47.0
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1164.4 1410 46.7
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1141.7 1408 47.6
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1090.1 1489 44.1
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1083.6 1246 49.0
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 1.8e-297 1026.5 1409 43.9
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 5.5e-294 1015.0 1431 42.1
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 1.3e-271 940.6 1420 40.1
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 1.1e-270 937.6 1018 51.0
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 3.2e-265 919.5 994 50.2
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 1.0e-255 887.9 998 49.7
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 4.5e-211 739.6 1516 34.2
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 1.5e-206 724.5 924 44.8
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 2.1e-147 528.1 1032 33.6
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 2.0e-142 511.5 1394 28.7
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 3.9e-130 470.7 686 41.3
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 6.4e-125 453.4 372 65.3
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 5.1e-122 443.7 366 65.0
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 2.5e-100 371.7 398 52.5
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 2.1e-67 262.3 591 31.3
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 1.5e-60 239.6 186 63.4
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 7.0e-47 194.1 196 56.1
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 5.2e-26 124.8 84 73.8
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 6.8e-26 124.4 100 63.0
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.9e-23 116.3 88 65.9
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.9e-23 116.3 88 65.9
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 7.1e-23 114.4 81 69.1
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 2.7e-22 112.5 89 58.4
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.2e-14 87.0 65 72.3
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 8.4e-08 64.3 140 30.0
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 9.3e-07 60.8 49 67.3


User provided reference genes

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